Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 8.8e-179 630.2 320 100.0
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 4.1e-59 232.6 229 56.3
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 7.0e-59 231.9 225 55.6
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 1.7e-57 227.3 229 54.6
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 3.8e-57 226.1 228 56.1
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 2.5e-56 223.4 225 52.0
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.2e-55 221.1 241 50.6
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 3.0e-54 216.5 241 49.4
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 5.2e-54 215.7 230 53.0
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 6.8e-54 215.3 232 50.4
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 8.8e-54 214.9 241 49.4
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 7.5e-53 211.8 229 49.3
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 1.7e-52 210.7 235 50.6
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 1.1e-51 208.0 231 51.9
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 1.8e-51 207.2 240 47.9
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 1.2e-50 204.5 234 47.4
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 2.7e-50 203.4 229 47.6
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 4.5e-50 202.6 218 50.5
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 1.3e-49 201.1 228 48.7
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 2.9e-49 199.9 230 49.6
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 2.9e-49 199.9 241 47.7
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 3.8e-49 199.5 218 49.5
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 5.0e-49 199.1 230 49.6
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 1.5e-48 197.6 237 46.0
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 2.5e-48 196.8 235 46.8
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 2.5e-48 196.8 238 45.0
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 3.6e-47 193.0 237 46.4
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 4.7e-47 192.6 230 48.3
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 8.9e-46 188.3 227 46.7
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 8.9e-46 188.3 232 47.4
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 1.2e-45 188.0 194 50.0
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 1.5e-45 187.6 230 47.4
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 2.0e-45 187.2 219 49.3
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 7.5e-45 185.3 244 45.9
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.3e-44 184.5 224 47.3
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.7e-44 184.1 209 48.3
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 1.1e-43 181.4 261 42.1
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 3.2e-43 179.9 228 46.1
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 4.1e-43 179.5 229 45.4
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 5.4e-43 179.1 184 54.3
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 9.2e-43 178.3 229 44.5
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 9.2e-43 178.3 242 43.8
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 1.6e-42 177.6 223 45.3
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 1.6e-42 177.6 233 44.6
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 5.9e-42 175.6 294 40.5
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 1.7e-41 174.1 228 43.4
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 5.0e-41 172.6 224 44.2
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 5.0e-41 172.6 227 45.4
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 6.6e-41 172.2 230 43.0
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.5e-40 171.0 211 48.8
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 1.5e-40 171.0 234 41.9
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 3.3e-40 169.9 228 41.2
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 4.3e-40 169.5 223 43.5
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 2.1e-39 167.2 223 45.7
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 2.8e-39 166.8 221 43.0
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 4.7e-39 166.0 228 42.1
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 8.0e-39 165.2 176 54.0
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 8.0e-39 165.2 283 40.3
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 1.8e-38 164.1 228 42.1
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 1.8e-38 164.1 228 42.1
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 1.8e-38 164.1 203 48.8
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 1.8e-38 164.1 223 45.3
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 2.3e-38 163.7 165 55.8
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 6.8e-38 162.2 223 39.9
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 6.8e-38 162.2 228 41.2
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 8.9e-38 161.8 221 43.9
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 1.2e-37 161.4 228 41.7
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 6.4e-36 155.6 224 45.1
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 1.1e-35 154.8 186 47.8
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 1.1e-35 154.8 236 41.1
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 1.2e-34 151.4 202 41.6
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 1.2e-34 151.4 167 45.5
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 1.6e-34 151.0 184 45.7
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 3.5e-34 149.8 252 37.7
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 6.0e-34 149.1 260 38.5
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 1.0e-33 148.3 252 37.7
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 1.3e-33 147.9 195 42.1
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 2.3e-33 147.1 339 32.7
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 1.1e-32 144.8 249 37.8
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.5e-32 144.4 280 36.8
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 1.5e-32 144.4 234 43.2
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 1.1e-30 138.3 137 50.4
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 1.4e-30 137.9 133 53.4
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 5.2e-30 136.0 144 49.3
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 4.4e-29 132.9 209 38.8
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 2.2e-28 130.6 118 55.1
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 1.9e-27 127.5 188 41.0
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 3.2e-27 126.7 233 37.3
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 1.2e-26 124.8 227 38.8
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 1.2e-26 124.8 224 39.3
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 1.2e-26 124.8 304 31.9
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 8.6e-25 118.6 184 38.6
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 5.6e-24 115.9 144 45.8
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 1.2e-23 114.8 136 44.1
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 1.4e-22 111.3 195 35.9
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 1.4e-19 101.3 197 37.1
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 3.2e-19 100.1 234 30.8
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 5.1e-17 92.8 136 41.9
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 7.3e-16 89.0 120 42.5
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 7.3e-16 89.0 120 42.5
Manes.02G216400 Manihot esculenta HOM05D000842 ORTHO05D000650 3.1e-14 83.6 98 52.0
Nn2g10984 Nelumbo nucifera HOM05D000842 ORTHO05D000650 7.6e-13 79.0 98 48.0
Actinidia34476 Actinidia chinensis HOM05D000842 ORTHO05D000650 2.2e-12 77.4 98 45.9
Potri.001G281400 Populus trichocarpa HOM05D000842 ORTHO05D000650 2.2e-12 77.4 98 44.9
Dinv28686 Davidia involucrata HOM05D000842 ORTHO05D000650 6.4e-12 75.9 98 48.0
Peaxi162Scf00239g00098 Petunia axillaris HOM05D000842 ORTHO05D000650 1.0e-09 68.6 98 41.8
MBI03_g33624_MAGBIO Magnolia biondii HOM05D000842 ORTHO05D000650 1.3e-09 68.2 105 42.9
TAR633G2814 Trochodendron aralioides HOM05D000842 ORTHO05D000650 1.7e-09 67.8 98 41.8
Nitab4.5_0012182g0010 Nicotiana tabacum HOM05D000842 ORTHO05D000650 3.0e-09 67.0 98 39.8
CSS0023437 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 5.1e-09 66.2 98 40.8
Dinv09662 Davidia involucrata HOM05D000842 ORTHO05D000650 5.1e-09 66.2 98 42.9
Zm00001eb025660 Zea mays HOM05D007204 ORTHO05D008593 5.1e-09 66.2 53 58.5
CSS0048360 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 6.6e-09 65.9 98 40.8
CiPaw.13G071300 Carya illinoinensis HOM05D000842 ORTHO05D000650 6.6e-09 65.9 98 41.8
Nitab4.5_0000046g0050 Nicotiana tabacum HOM05D000842 ORTHO05D000650 6.6e-09 65.9 98 39.8
Atru.chr3.4132 Acer truncatum HOM05D000842 ORTHO05D000650 8.7e-09 65.5 98 38.8
CDE06G1580 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 8.7e-09 65.5 97 40.2
Duzib168G0310 Durio zibethinus HOM05D000842 ORTHO05D000650 1.1e-08 65.1 98 39.8
Sabra09G0058500 Salix brachista HOM05D000842 ORTHO05D000650 1.5e-08 64.7 59 50.8
MELO3C020505.2 Cucumis melo HOM05D000842 ORTHO05D000650 1.9e-08 64.3 98 38.8
Glyma.02G230700 Glycine max HOM05D000842 ORTHO05D000650 1.9e-08 64.3 98 39.8
Thecc.09G355800 Theobroma cacao HOM05D000842 ORTHO05D000650 3.3e-08 63.5 98 38.8
CSS0029835 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 4.3e-08 63.2 97 41.2
Potri.009G076700 Populus trichocarpa HOM05D000842 ORTHO05D000650 5.6e-08 62.8 54 55.6
Hma1.2p1_2630F.1_g325720 Hydrangea macrophylla HOM05D000842 ORTHO05D000650 1.3e-07 61.6 98 41.8
Lj1A127G60 Lonicera japonica HOM05D000842 ORTHO05D000650 1.3e-07 61.6 98 39.8
SMO358G0161 Selaginella moellendorffii HOM05D007204 ORTHO05D008593 1.3e-07 61.6 179 29.1
ClCG03G000280 Citrullus lanatus HOM05D000842 ORTHO05D000650 1.6e-07 61.2 98 34.7
Migut.D00852 Erythranthe guttata HOM05D000842 ORTHO05D000650 2.1e-07 60.8 135 35.6
CsaV3_1G036640 Cucumis sativus L. HOM05D000842 ORTHO05D000650 3.6e-07 60.1 98 33.7
Lalb_Chr15g0083181 Lupinus albus HOM05D007204 ORTHO05D008593 6.2e-07 59.3 55 58.2
Ciclev10028985m.g Citrus clementina HOM05D000842 ORTHO05D000650 8.1e-07 58.9 73 45.2
Haze_24396 Corylus avellana HOM05D000842 ORTHO05D000650 8.1e-07 58.9 98 40.8
Gorai.009G112800 Gossypium raimondii HOM05D000842 ORTHO05D000650 8.1e-07 58.9 98 35.7
Rhsim01G0240100 Rhododendron simsii HOM05D000842 ORTHO05D000650 8.1e-07 58.9 98 37.8
TWI31G0085 Tripterygium wilfordii HOM05D000842 ORTHO05D000650 8.1e-07 58.9 100 35.0
Gohir.D05G108600 Gossypium hirsutum HOM05D000842 ORTHO05D000650 1.1e-06 58.5 98 36.7
TPR.G22099 Trifolium pratense HOM05D007204 ORTHO05D008593 1.1e-06 58.5 112 34.8
vmacro14616 Vaccinium macrocarpon HOM05D000842 ORTHO05D000650 1.8e-06 57.8 72 43.1
Cfa011759 Carpinus fangiana HOM05D000842 ORTHO05D000650 2.4e-06 57.4 98 39.8
LjContig00141g0019488 Lotus japonicus HOM05D000842 ORTHO05D000650 2.4e-06 57.4 98 37.8
Prupe.6G050600 Prunus persica HOM05D000842 ORTHO05D000650 3.1e-06 57.0 98 34.7
Ca_05090_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 4.0e-06 56.6 50 52.0
Ca_14995_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 4.0e-06 56.6 50 52.0
MD03G1060200 Malus domestica HOM05D000842 ORTHO05D000650 4.0e-06 56.6 98 33.7
TPR.G444 Trifolium pratense HOM05D007204 ORTHO05D008593 4.0e-06 56.6 45 53.3
GSVIVG01024666001 Vitis vinifera HOM05D000842 ORTHO05D000650 4.0e-06 56.6 106 38.7
SEGI_29701 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 5.3e-06 56.2 224 24.6
MSTRG.21235 Avicennia marina HOM05D000842 ORTHO05D000650 6.9e-06 55.8 98 35.7
Medtr5g072760 Medicago truncatula HOM05D000842 ORTHO05D000650 6.9e-06 55.8 102 32.4


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