Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 1.2e-169 599.7 305 100.0
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 8.2e-158 560.5 306 93.8
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.7e-155 552.7 302 89.1
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.1e-154 550.1 301 89.0
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 2.1e-153 545.8 301 88.0
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 4.6e-153 544.7 301 86.4
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 1.4e-152 543.1 301 89.7
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 3.0e-152 542.0 301 89.0
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.1e-151 540.0 301 88.7
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 4.3e-151 538.1 302 88.7
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 5.7e-151 537.7 301 89.0
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 5.7e-151 537.7 302 89.1
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 9.7e-151 537.0 302 86.8
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 9.7e-151 537.0 301 89.4
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 1.7e-150 536.2 301 88.7
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 1.7e-150 536.2 301 88.7
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 1.7e-150 536.2 301 89.4
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 4.8e-150 534.6 301 89.4
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.8e-149 532.7 301 89.4
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.8e-149 532.7 301 88.0
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 3.1e-149 531.9 301 85.7
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 6.9e-149 530.8 301 84.7
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.2e-148 530.0 301 85.4
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 3.4e-148 528.5 301 85.4
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 3.4e-148 528.5 301 88.7
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 4.5e-148 528.1 301 88.0
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 7.7e-148 527.3 301 87.4
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 1.0e-147 526.9 301 87.7
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 3.8e-147 525.0 301 86.0
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 5.0e-147 524.6 301 86.0
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 6.5e-147 524.2 301 87.4
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 6.5e-147 524.2 301 86.4
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 1.9e-146 522.7 300 84.3
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.9e-146 522.7 301 84.7
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.2e-146 521.9 300 83.0
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 4.2e-146 521.5 303 83.5
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 4.2e-146 521.5 301 83.7
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 4.2e-146 521.5 301 86.4
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 4.2e-146 521.5 301 86.7
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 5.5e-146 521.2 301 85.4
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 7.2e-146 520.8 301 82.7
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 7.2e-146 520.8 301 84.1
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 7.2e-146 520.8 301 85.7
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 1.2e-145 520.0 301 86.0
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.2e-145 520.0 301 84.1
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 1.2e-145 520.0 302 84.1
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 2.1e-145 519.2 301 82.4
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 2.1e-145 519.2 301 85.4
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 2.7e-145 518.8 301 82.1
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 2.7e-145 518.8 301 83.7
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.7e-145 518.8 302 85.1
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 4.7e-145 518.1 301 84.1
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 7.9e-145 517.3 301 83.7
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 1.0e-144 516.9 301 85.4
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 1.0e-144 516.9 301 83.1
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 1.4e-144 516.5 301 82.4
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.8e-144 516.2 301 83.4
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 1.8e-144 516.2 301 82.4
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 2.3e-144 515.8 301 83.4
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 2.3e-144 515.8 301 83.7
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 2.3e-144 515.8 301 83.1
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.3e-144 515.8 301 83.1
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 3.0e-144 515.4 301 83.7
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.9e-144 515.0 301 83.1
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 6.7e-144 514.2 369 71.8
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.1e-143 513.5 300 85.3
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 1.1e-143 513.5 301 81.7
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 3.3e-143 511.9 302 84.8
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 3.3e-143 511.9 301 83.4
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 7.4e-143 510.8 301 83.1
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 7.4e-143 510.8 302 85.1
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 9.7e-143 510.4 322 80.7
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 1.3e-142 510.0 301 82.7
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 1.3e-142 510.0 301 83.1
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 2.2e-142 509.2 301 82.1
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.8e-142 508.8 298 82.9
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 4.8e-142 508.1 301 83.4
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 4.8e-142 508.1 302 82.8
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 9.1e-141 503.8 301 80.7
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 9.1e-141 503.8 301 81.7
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.2e-140 503.4 301 80.4
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.5e-140 501.9 326 76.7
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 5.9e-140 501.1 308 81.8
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 2.9e-139 498.8 301 83.1
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 8.5e-139 497.3 301 80.1
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 1.5e-138 496.5 301 80.4
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 1.9e-138 496.1 304 79.9
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 4.7e-137 491.5 301 78.7
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.0e-136 490.3 307 77.5
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.8e-136 489.6 304 80.3
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 1.8e-136 489.6 301 77.4
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 2.3e-136 489.2 305 78.4
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 8.8e-136 487.3 301 80.1
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.0e-135 486.1 300 79.7
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 5.7e-135 484.6 301 80.4
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 7.5e-135 484.2 307 77.9
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.3e-134 483.4 306 76.5
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.3e-134 483.4 306 76.5
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.3e-134 483.4 306 76.5
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 1.7e-134 483.0 307 76.2
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 2.2e-134 482.6 305 76.4
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 2.8e-134 482.3 307 76.2
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 4.8e-134 481.5 307 77.2
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 9.1e-133 477.2 306 75.5
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 2.7e-132 475.7 301 78.4
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 2.7e-132 475.7 301 78.4
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 7.7e-132 474.2 302 79.1
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 1.3e-131 473.4 301 77.7
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 6.5e-131 471.1 388 65.5
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 6.5e-131 471.1 302 77.5
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 3.0e-120 435.6 300 71.7
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 3.4e-119 432.2 301 68.8
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 1.8e-117 426.4 303 67.7
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.9e-115 419.1 301 67.1
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 4.0e-112 408.7 301 70.8
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 1.5e-111 406.8 235 87.2
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.6e-111 406.0 257 82.5
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 2.2e-110 402.9 302 65.2
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 1.2e-105 387.1 300 64.0
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 7.3e-98 361.3 308 58.8
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 3.6e-97 359.0 221 83.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 8.9e-96 354.4 222 77.0
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 6.6e-91 338.2 224 79.5
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 1.2e-89 334.0 203 79.3
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 5.4e-69 265.4 190 71.6
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 3.3e-66 256.1 149 81.2
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 9.6e-66 254.6 143 84.6
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 1.8e-64 250.4 181 70.2
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 4.8e-57 225.7 154 71.4
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 3.8e-54 216.1 300 46.7
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 6.5e-54 215.3 150 69.3
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 1.3e-41 174.5 141 58.2
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 3.7e-41 172.9 80 97.5
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 7.7e-39 165.2 89 84.3
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 1.7e-38 164.1 83 88.0
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 5.0e-38 162.5 79 91.1
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 1.4e-37 161.0 80 90.0
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 4.2e-37 159.5 125 64.8
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 7.9e-36 155.2 200 47.5
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 2.3e-35 153.7 298 33.6
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 5.1e-35 152.5 304 33.9
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.3e-30 137.9 79 81.0
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 2.8e-25 120.2 82 67.1
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 2.8e-25 120.2 58 93.1
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 4.2e-21 106.3 64 76.6
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 6.1e-20 102.4 307 32.6
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 1.2e-18 98.2 56 82.1
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 4.8e-17 92.8 74 75.7
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.6e-15 87.8 239 27.6


User provided reference genes

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