Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 0.0e+00 1213.0 624 100.0
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 7.9e-200 701.0 636 61.0
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 3.2e-193 679.1 634 59.8
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 1.0e-191 674.1 635 60.2
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 9.1e-188 661.0 632 57.8
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 2.6e-187 659.4 648 57.7
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 1.5e-185 653.7 632 57.3
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.8e-180 636.7 634 56.9
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 3.1e-180 636.0 627 58.4
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 2.0e-179 633.3 641 56.5
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 2.7e-179 632.9 635 58.7
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 3.5e-179 632.5 633 59.2
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 3.5e-179 632.5 633 59.2
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.3e-178 630.6 634 56.9
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 1.5e-177 627.1 633 56.1
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 1.9e-177 626.7 633 57.3
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 1.0e-175 620.9 631 55.6
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 1.4e-175 620.5 660 54.8
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 2.3e-175 619.8 685 54.5
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 4.4e-174 615.5 633 58.0
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 1.8e-172 610.1 648 55.2
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 3.5e-171 605.9 636 55.3
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 4.7e-168 595.5 644 54.3
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 8.0e-168 594.7 645 55.3
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 1.4e-167 594.0 671 53.2
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 1.5e-166 590.5 639 54.1
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 1.6e-163 580.5 639 52.9
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 2.0e-163 580.1 643 54.6
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 7.8e-163 578.2 647 52.9
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 1.5e-161 573.9 627 55.0
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 1.5e-158 563.9 640 51.7
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 1.4e-156 557.4 640 53.3
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 1.6e-155 553.9 631 52.5
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 3.5e-155 552.7 634 53.8
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 1.0e-154 551.2 630 51.7
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 3.9e-154 549.3 651 52.4
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 5.0e-154 548.9 641 52.3
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 1.9e-153 547.0 630 52.5
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 1.6e-152 543.9 634 52.5
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 2.8e-152 543.1 653 52.5
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 4.0e-151 539.3 650 51.1
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 7.5e-150 535.0 653 51.1
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 2.4e-148 530.0 653 51.8
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.2e-147 527.7 651 50.7
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 4.6e-147 525.8 655 51.3
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 2.3e-146 523.5 643 51.5
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 3.9e-146 522.7 645 51.2
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.5e-145 520.8 656 49.1
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 1.9e-145 520.4 627 51.8
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 7.3e-145 518.5 632 49.4
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 3.1e-143 513.1 633 49.9
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 1.5e-142 510.8 655 50.2
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 5.8e-142 508.8 639 50.9
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 1.2e-139 501.1 648 50.2
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 2.1e-139 500.4 632 49.2
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 4.6e-139 499.2 647 48.5
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 3.1e-135 486.5 594 52.2
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 3.4e-134 483.0 650 47.1
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 8.4e-133 478.4 657 46.7
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 5.4e-132 475.7 658 47.9
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 2.1e-131 473.8 656 47.1
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 5.1e-130 469.2 541 50.6
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 4.3e-129 466.1 681 45.5
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 2.0e-126 457.2 658 47.6
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 4.4e-126 456.1 634 46.8
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 8.4e-125 451.8 659 46.9
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 6.0e-123 445.7 698 44.1
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 6.6e-122 442.2 632 45.4
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 3.3e-121 439.9 658 46.7
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 7.3e-121 438.7 436 56.7
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 8.1e-120 435.3 666 44.0
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 6.9e-119 432.2 655 46.9
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 3.4e-118 429.9 645 45.0
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 5.8e-118 429.1 654 46.5
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 6.4e-117 425.6 655 43.4
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 1.2e-115 421.4 433 54.3
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 3.5e-115 419.9 633 45.0
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 4.3e-113 412.9 640 44.7
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.4e-111 407.9 541 47.3
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 1.8e-111 407.5 539 47.5
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 1.0e-109 401.7 497 49.3
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 4.9e-109 399.4 641 47.1
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 6.5e-109 399.1 654 44.8
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 1.8e-106 391.0 637 44.6
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 5.1e-106 389.4 639 44.3
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 5.1e-106 389.4 635 42.7
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 2.5e-105 387.1 656 42.2
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 2.5e-105 387.1 479 49.5
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 1.4e-103 381.3 654 42.8
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 5.3e-103 379.4 631 42.9
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 2.6e-102 377.1 643 44.2
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 4.5e-102 376.3 635 44.6
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 5.8e-102 375.9 640 43.8
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 5.0e-101 372.9 641 44.0
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 6.5e-101 372.5 641 44.1
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 1.9e-100 370.9 641 44.0
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 5.5e-100 369.4 491 45.8
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 6.1e-99 365.9 618 42.6
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 2.3e-98 364.0 637 43.0
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 3.0e-98 363.6 648 41.8
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 5.7e-97 359.4 628 42.7
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 7.4e-97 359.0 624 43.6
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 1.6e-96 357.8 643 41.7
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 1.6e-96 357.8 597 44.7
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 5.3e-95 352.8 666 42.3
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 6.9e-95 352.4 644 41.1
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 5.5e-92 342.8 636 39.9
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 5.1e-90 336.3 715 37.6
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 5.1e-90 336.3 700 38.7
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.3e-88 331.6 645 41.7
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 2.2e-88 330.9 686 38.2
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 1.4e-84 318.2 359 51.8
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 1.4e-84 318.2 504 43.5
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 6.1e-83 312.8 478 45.2
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 2.3e-82 310.8 773 34.9
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 1.5e-81 308.1 655 40.5
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 2.6e-81 307.4 451 45.2
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 8.5e-77 292.4 434 44.7
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 1.4e-71 275.0 431 43.2
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 1.0e-58 232.3 467 39.4
Cpa.g.sc81.1 Carica papaya HOM05D005409 ORTHO05D006456 2.8e-56 224.2 192 66.7
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 7.7e-54 216.1 626 33.9
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 3.6e-51 207.2 726 33.2
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 8.0e-51 206.1 254 48.4
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 8.9e-50 202.6 162 64.2
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 1.3e-48 198.7 646 33.9
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 2.0e-46 191.4 133 69.9
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 1.4e-42 178.7 646 32.7
Haze_06667 Corylus avellana HOM05D005409 ORTHO05D006456 9.5e-28 129.4 186 41.9
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 3.1e-26 124.4 715 26.2
Atru.chr6.3115 Acer truncatum HOM05D005409 ORTHO05D006456 7.1e-23 113.2 194 40.7
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 2.5e-20 104.8 426 30.8
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 5.6e-20 103.6 1015 24.3
Actinidia26960 Actinidia chinensis HOM05D005409 ORTHO05D006456 4.4e-17 94.0 85 62.4
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 2.4e-15 88.2 917 24.2
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 9.3e-15 86.3 116 49.1
QL05p012359 Quercus lobata HOM05D005409 ORTHO05D006456 3.9e-13 80.9 109 45.0
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 2.5e-12 78.2 116 43.1
Nn5g30945 Nelumbo nucifera HOM05D005409 ORTHO05D006456 3.5e-06 57.8 46 58.7


User provided reference genes

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