Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 1.4e-149 533.1 300 100.0
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 7.5e-55 218.4 292 53.1
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 4.1e-53 212.6 317 53.0
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 2.7e-52 209.9 331 45.9
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 5.9e-52 208.8 325 51.7
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 8.6e-51 204.9 283 56.9
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 7.3e-50 201.8 283 56.5
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.2e-49 198.7 278 53.2
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 5.2e-48 195.7 304 51.0
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.2e-47 194.5 265 53.2
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.6e-47 193.4 286 45.1
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 2.6e-47 193.4 304 50.7
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 2.6e-47 193.4 223 54.3
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 1.3e-46 191.0 281 48.8
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.7e-46 190.7 316 48.7
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 4.9e-46 189.1 283 49.1
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 4.9e-46 189.1 281 50.5
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 6.4e-46 188.7 275 49.8
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 8.3e-46 188.3 304 52.3
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.4e-45 186.8 321 47.0
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 5.4e-45 185.7 317 46.4
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.6e-44 184.1 312 50.3
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 2.7e-44 183.3 312 48.1
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.3e-43 181.0 310 47.4
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 2.3e-43 180.3 262 51.1
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 3.0e-43 179.9 307 50.8
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 5.0e-43 179.1 285 51.6
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 1.1e-42 177.9 330 44.8
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 1.9e-42 177.2 303 50.2
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 5.6e-42 175.6 301 49.5
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 7.3e-42 175.3 306 46.4
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 7.3e-42 175.3 286 47.6
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 7.3e-42 175.3 303 47.5
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.2e-41 174.5 285 46.3
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.1e-41 173.7 356 41.9
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 2.8e-41 173.3 309 41.4
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 3.6e-41 172.9 273 44.7
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 4.7e-41 172.6 311 48.2
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 6.2e-41 172.2 298 46.0
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 8.1e-41 171.8 333 43.2
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.4e-40 171.0 309 45.3
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-40 171.0 294 48.6
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 1.8e-40 170.6 264 50.0
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 1.5e-39 167.5 299 45.5
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 2.0e-39 167.2 312 42.9
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 3.4e-39 166.4 277 47.7
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 4.4e-39 166.0 268 45.1
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 5.8e-39 165.6 313 44.7
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 7.5e-39 165.2 311 45.3
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 7.5e-39 165.2 357 41.2
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 9.8e-39 164.9 309 48.2
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.3e-38 164.5 311 47.3
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 1.3e-38 164.5 280 43.6
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.2e-38 163.7 272 47.4
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 4.9e-38 162.5 309 44.7
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 4.9e-38 162.5 325 43.7
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 6.4e-38 162.2 313 44.4
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 6.4e-38 162.2 325 43.7
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 8.3e-38 161.8 316 46.2
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 8.3e-38 161.8 308 42.5
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 1.1e-37 161.4 327 44.6
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 1.1e-37 161.4 327 44.6
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 1.1e-37 161.4 327 44.6
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 1.1e-37 161.4 292 45.9
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.4e-37 161.0 338 42.3
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 1.9e-37 160.6 282 46.8
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 2.4e-37 160.2 270 47.4
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 4.1e-37 159.5 293 40.6
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 4.1e-37 159.5 301 49.2
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.1e-37 159.5 320 44.4
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 5.4e-37 159.1 280 45.7
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 5.4e-37 159.1 261 48.7
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 1.6e-36 157.5 344 42.4
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 2.1e-36 157.1 287 44.3
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 4.6e-36 156.0 319 45.1
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 4.6e-36 156.0 267 52.1
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 7.8e-36 155.2 318 42.8
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 1.0e-35 154.8 306 44.8
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.0e-35 154.8 330 43.9
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 1.3e-35 154.5 220 53.2
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 1.3e-35 154.5 316 48.1
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 1.7e-35 154.1 286 45.5
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 1.7e-35 154.1 295 43.4
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 5.1e-35 152.5 307 42.3
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 6.6e-35 152.1 266 44.4
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 6.6e-35 152.1 307 43.0
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 1.9e-34 150.6 344 41.6
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 2.5e-34 150.2 275 41.5
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 3.3e-34 149.8 289 43.6
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 4.3e-34 149.4 321 45.8
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 1.2e-33 147.9 249 43.0
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 1.2e-33 147.9 302 42.1
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.1e-33 147.1 280 43.2
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 3.6e-33 146.4 330 44.2
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 6.2e-33 145.6 276 43.5
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 8.1e-33 145.2 261 52.1
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.1e-32 144.8 273 48.0
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.4e-32 144.4 291 41.6
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.4e-32 144.4 288 44.8
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 1.8e-32 144.1 312 42.3
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 2.3e-32 143.7 299 43.5
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 3.1e-32 143.3 312 42.3
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 4.0e-32 142.9 314 42.4
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 5.2e-32 142.5 201 45.3
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 8.9e-32 141.7 276 42.8
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 3.4e-31 139.8 287 42.5
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 9.9e-31 138.3 303 43.2
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 1.3e-30 137.9 298 46.3
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 1.3e-30 137.9 314 40.4
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 1.3e-30 137.9 289 38.8
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 1.7e-30 137.5 310 41.6
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 2.9e-30 136.7 278 49.6
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.8e-30 136.3 249 47.8
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 8.4e-30 135.2 276 39.5
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 9.2e-29 131.7 304 41.4
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 2.1e-28 130.6 327 47.7
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 3.5e-28 129.8 316 40.8
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 6.0e-28 129.0 274 43.1
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 7.8e-28 128.6 292 43.2
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 7.8e-28 128.6 223 48.0
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.3e-27 127.9 293 44.0
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 7.3e-26 122.1 285 45.3
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 7.3e-26 122.1 301 39.9
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 4.7e-25 119.4 265 40.4
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 6.2e-25 119.0 326 36.8
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 4.0e-24 116.3 274 39.1
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 4.0e-24 116.3 291 37.1
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 5.2e-24 115.9 288 37.2
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.5e-23 114.4 274 39.1
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 1.5e-23 114.4 272 40.4
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 1.5e-23 114.4 262 40.1
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 2.6e-23 113.6 302 38.1
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 9.9e-23 111.7 270 41.1
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 1.7e-22 110.9 202 47.5
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 1.7e-22 110.9 253 41.9
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.1e-21 108.2 239 39.3
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 6.0e-20 102.4 207 42.0
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.9e-18 97.4 187 39.0
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 5.6e-18 95.9 280 38.2
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.1e-16 91.7 155 40.6
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 9.0e-16 88.6 202 44.6
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.9e-14 83.6 269 34.6
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 3.5e-12 76.6 125 46.4
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 3.5e-12 76.6 260 30.8
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.0e-11 73.6 250 36.4
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 1.1e-10 71.6 298 31.2
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 5.6e-10 69.3 77 53.2
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 7.4e-10 68.9 126 41.3
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 4.8e-09 66.2 69 55.1
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.6e-07 60.5 96 44.8
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.4e-07 60.1 104 43.3
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.2e-06 57.4 158 34.2
Zm00001eb143140 Zea mays HOM05D004496 ORTHO05D005513 2.2e-06 57.4 50 66.0
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 3.8e-06 56.6 223 41.3
Os01g0922100 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 8.4e-06 55.5 156 32.1


User provided reference genes

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