Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G017601 Manihot esculenta HOM05D005693 ORTHO05D006826 9.3e-87 323.6 169 100.0
Manes.17G026624 Manihot esculenta HOM05D005693 ORTHO05D006826 9.3e-87 323.6 169 100.0
Potri.016G045200 Populus trichocarpa HOM05D005693 ORTHO05D006826 4.0e-45 185.3 244 49.2
THA.LOC104799293 Tarenaya hassleriana HOM05D005693 ORTHO05D006826 1.5e-44 183.3 247 48.6
Hund24794 Selenicereus undatus HOM05D005693 ORTHO05D006826 5.7e-44 181.4 180 57.2
Sabra16G0049200 Salix brachista HOM05D005693 ORTHO05D006826 7.5e-44 181.0 238 49.2
Haze_20000 Corylus avellana HOM05D005693 ORTHO05D006826 9.8e-44 180.6 241 47.3
Haze_20002 Corylus avellana HOM05D005693 ORTHO05D006826 9.8e-44 180.6 241 47.3
Duzib128G0858 Durio zibethinus HOM05D005693 ORTHO05D006826 1.7e-43 179.9 240 48.3
A05p37250 Brassica napus HOM05D005693 ORTHO05D006826 8.3e-43 177.6 241 48.1
EL10Ac3g06910 Beta vulgaris HOM05D005693 ORTHO05D006826 1.1e-42 177.2 233 47.6
CiPaw.09G046600 Carya illinoinensis HOM05D005693 ORTHO05D006826 1.1e-42 177.2 240 48.3
Ciclev10011987m.g Citrus clementina HOM05D005693 ORTHO05D006826 2.4e-42 176.0 237 47.3
AL3G23730 Arabidopsis lyrata HOM05D005693 ORTHO05D006826 4.1e-42 175.3 241 46.9
CANSAT64G1199 Cannabis sativa HOM05D005693 ORTHO05D006826 4.1e-42 175.3 241 47.7
Cpa.g.sc85.51 Carica papaya HOM05D005693 ORTHO05D006826 4.1e-42 175.3 246 47.2
Dinv24066 Davidia involucrata HOM05D005693 ORTHO05D006826 4.1e-42 175.3 240 47.5
GSVIVG01033491001 Vitis vinifera HOM05D005693 ORTHO05D006826 4.1e-42 175.3 240 47.5
Sc19g0006040 Simmondsia chinensis HOM05D005693 ORTHO05D006826 5.4e-42 174.9 247 45.3
AT3G12100 Arabidopsis thaliana HOM05D005693 ORTHO05D006826 7.0e-42 174.5 241 46.9
BraA05t22521Z Brassica rapa HOM05D005693 ORTHO05D006826 7.0e-42 174.5 240 47.9
TWI53G1089 Tripterygium wilfordii HOM05D005693 ORTHO05D006826 7.0e-42 174.5 236 47.0
Carub.0003s1144 Capsella rubella HOM05D005693 ORTHO05D006826 9.1e-42 174.1 240 47.1
Thhalv10020889m.g Eutrema salsugineum HOM05D005693 ORTHO05D006826 9.1e-42 174.1 241 47.3
Sp3g10330 Schrenkiella parvula HOM05D005693 ORTHO05D006826 9.1e-42 174.1 241 46.9
Manes.09G035800 Manihot esculenta HOM05D005693 ORTHO05D006826 1.2e-41 173.7 117 79.5
BcaC05g29290 Brassica carinata HOM05D005693 ORTHO05D006826 1.6e-41 173.3 240 47.5
C05p55720 Brassica napus HOM05D005693 ORTHO05D006826 1.6e-41 173.3 240 47.5
BolC5t34239H Brassica oleracea HOM05D005693 ORTHO05D006826 1.6e-41 173.3 240 47.5
AUR62012025 Chenopodium quinoa HOM05D005693 ORTHO05D006826 1.6e-41 173.3 228 47.4
Eucgr.A02454 Eucalyptus grandis HOM05D005693 ORTHO05D006826 1.6e-41 173.3 238 46.2
PSO339G5051 Papaver somniferum HOM05D005693 ORTHO05D006826 1.6e-41 173.3 240 45.4
RcHm_v2.0_Chr3g0479521 Rosa chinensis HOM05D005693 ORTHO05D006826 1.6e-41 173.3 245 45.3
BcaB06g25545 Brassica carinata HOM05D005693 ORTHO05D006826 2.0e-41 172.9 240 47.1
ClCG10G017580 Citrullus lanatus HOM05D005693 ORTHO05D006826 2.0e-41 172.9 241 46.5
Gorai.002G224200 Gossypium raimondii HOM05D005693 ORTHO05D006826 3.5e-41 172.2 241 46.9
PGR004G1521 Punica granatum HOM05D005693 ORTHO05D006826 3.5e-41 172.2 240 45.4
Thecc.05G172100 Theobroma cacao HOM05D005693 ORTHO05D006826 3.5e-41 172.2 241 47.3
MD12G1056600 Malus domestica HOM05D005693 ORTHO05D006826 4.5e-41 171.8 241 44.8
AUR62015362 Chenopodium quinoa HOM05D005693 ORTHO05D006826 5.9e-41 171.4 228 47.4
CSS0003318 Camellia sinensis var. sinensis HOM05D005693 ORTHO05D006826 1.0e-40 170.6 240 47.1
CSS0050183 Camellia sinensis var. sinensis HOM05D005693 ORTHO05D006826 1.0e-40 170.6 240 47.1
Phvul.001G142750 Phaseolus vulgaris HOM05D005693 ORTHO05D006826 1.0e-40 170.6 235 46.8
Nitab4.5_0004458g0020 Nicotiana tabacum HOM05D005693 ORTHO05D006826 1.3e-40 170.2 220 48.2
arahy.Tifrunner.gnm1.ann1.C1QR5S Arachis hypogaea HOM05D005693 ORTHO05D006826 1.7e-40 169.9 222 47.3
CsaV3_3G038750 Cucumis sativus L. HOM05D005693 ORTHO05D006826 1.7e-40 169.9 241 45.6
Medtr7g093290 Medicago truncatula HOM05D005693 ORTHO05D006826 2.3e-40 169.5 243 45.7
Oeu063873.1 Olea europaea HOM05D005693 ORTHO05D006826 2.3e-40 169.5 253 45.5
COL.COLO4_33976 Corchorus olitorius HOM05D005693 ORTHO05D006826 2.9e-40 169.1 240 47.1
Hma1.2p1_0648F.1_g195113 Hydrangea macrophylla HOM05D005693 ORTHO05D006826 3.8e-40 168.7 243 45.3
Glyma.03G145200 Glycine max HOM05D005693 ORTHO05D006826 5.0e-40 168.3 235 46.4
MD14G1055100 Malus domestica HOM05D005693 ORTHO05D006826 5.0e-40 168.3 241 44.0
Psat3g068360 Pisum sativum HOM05D005693 ORTHO05D006826 8.6e-40 167.5 240 45.8
Glyma.19G148200 Glycine max HOM05D005693 ORTHO05D006826 1.1e-39 167.2 235 46.0
PSO384G0754 Papaver somniferum HOM05D005693 ORTHO05D006826 1.9e-39 166.4 235 44.7
arahy.Tifrunner.gnm1.ann1.F8DN54 Arachis hypogaea HOM05D005693 ORTHO05D006826 3.3e-39 165.6 235 45.1
DCAR_013542 Daucus carota HOM05D005693 ORTHO05D006826 3.3e-39 165.6 241 46.1
Aqoxy1G00128 Aquilegia oxysepala HOM05D005693 ORTHO05D006826 9.5e-39 164.1 244 45.9
MSTRG.6485 Avicennia marina HOM05D005693 ORTHO05D006826 1.2e-38 163.7 240 45.0
Cc06_g15820 Coffea canephora HOM05D005693 ORTHO05D006826 1.2e-38 163.7 241 43.6
Nitab4.5_0001137g0070 Nicotiana tabacum HOM05D005693 ORTHO05D006826 1.2e-38 163.7 232 46.1
Peaxi162Scf00258g00724 Petunia axillaris HOM05D005693 ORTHO05D006826 1.6e-38 163.3 232 47.0
Solyc03g063320.3 Solanum lycopersicum HOM05D005693 ORTHO05D006826 1.6e-38 163.3 236 45.8
Sopen03g015940 Solanum pennellii HOM05D005693 ORTHO05D006826 2.1e-38 162.9 236 46.2
Lj1g0019099 Lotus japonicus HOM05D005693 ORTHO05D006826 6.1e-38 161.4 235 44.7
ATR0807G195 Amborella trichopoda HOM05D005693 ORTHO05D006826 1.0e-37 160.6 240 45.0
Ah.13g075810 Amaranthus hybridus HOM05D005693 ORTHO05D006826 1.8e-37 159.8 291 38.8
CDE05G1621 Ceratophyllum demersum HOM05D005693 ORTHO05D006826 2.3e-37 159.5 246 42.3
Migut.J01840 Erythranthe guttata HOM05D005693 ORTHO05D006826 5.2e-37 158.3 228 44.3
Lalb_Chr18g0047901 Lupinus albus HOM05D005693 ORTHO05D006826 6.8e-37 157.9 240 43.8
SalBow6G0162 Salvia bowleyana HOM05D005693 ORTHO05D006826 6.8e-37 157.9 228 45.2
vmacro07901 Vaccinium macrocarpon HOM05D005693 ORTHO05D006826 6.8e-37 157.9 269 40.5
HanXRQChr05g0132951 Helianthus annuus HOM05D005693 ORTHO05D006826 8.9e-37 157.5 240 43.8
Actinidia32396 Actinidia chinensis HOM05D005693 ORTHO05D006826 1.2e-36 157.1 244 42.2
Lsat_1_v5_gn_8_75420 Lactuca sativa HOM05D005693 ORTHO05D006826 2.6e-36 156.0 245 41.2
CAN.G87.1 Capsicum annuum HOM05D005693 ORTHO05D006826 9.8e-36 154.1 231 44.6
Lju124A25T35 Lonicera japonica HOM05D005693 ORTHO05D006826 2.8e-35 152.5 282 39.0
SEGI_14579 Sequoiadendron giganteum HOM05D005693 ORTHO05D006826 2.8e-35 152.5 232 41.4
Ca_08527_v3 Cicer arietinum L. HOM05D005693 ORTHO05D006826 3.7e-35 152.1 226 44.7
ECA236G1678 Erigeron canadensis HOM05D005693 ORTHO05D006826 8.3e-35 151.0 228 43.4
HPP92_009025 Vanilla planifolia HOM05D005693 ORTHO05D006826 3.1e-34 149.1 242 39.7
HPP92_009079 Vanilla planifolia HOM05D005693 ORTHO05D006826 3.1e-34 149.1 242 39.7
MELO3C009620.2 Cucumis melo HOM05D005693 ORTHO05D006826 1.7e-32 143.3 313 35.5
Zm00001eb190540 Zea mays HOM05D005693 ORTHO05D006826 6.6e-32 141.4 226 40.7
Nn7g36005 Nelumbo nucifera HOM05D005693 ORTHO05D006826 1.6e-30 136.7 209 44.0
FvH4_6g22170 Fragaria vesca HOM05D005693 ORTHO05D006826 2.8e-30 136.0 115 63.5
Gohir.A01G191200 Gossypium hirsutum HOM05D005693 ORTHO05D006826 3.6e-30 135.6 109 67.0
unitig_744.g24644 Utricularia gibba HOM05D001741 ORTHO05D002196 8.0e-30 134.4 257 38.9
Prupe.7G077600 Prunus persica HOM05D005693 ORTHO05D006826 1.0e-29 134.0 111 64.0
SGA_v2.0_scaffold69G23060 Striga asiatica HOM05D005693 ORTHO05D006826 1.0e-29 134.0 300 34.7
Atru.chr8.1120 Acer truncatum HOM05D005693 ORTHO05D006826 1.4e-29 133.7 78 84.6
TAR623G1103 Trochodendron aralioides HOM05D005693 ORTHO05D006826 2.3e-29 132.9 103 68.0
Gohir.D01G178700 Gossypium hirsutum HOM05D005693 ORTHO05D006826 3.1e-29 132.5 109 66.1
FAN27G0418 Fragaria x ananassa HOM05D005693 ORTHO05D006826 4.0e-29 132.1 89 75.3
SMO196G0199 Selaginella moellendorffii HOM05D005693 ORTHO05D006826 8.9e-29 131.0 230 37.8
Aa31LG3G6280 Aethionema arabicum HOM05D005693 ORTHO05D006826 2.6e-28 129.4 89 75.3
CARHR086660 Cardamine hirsuta HOM05D005693 ORTHO05D006826 7.5e-28 127.9 85 75.3
VMungo1383G3018 Vigna mungo HOM05D005693 ORTHO05D006826 1.3e-27 127.1 96 71.9
Sed0000696 Sechium edule HOM05D005693 ORTHO05D006826 1.7e-27 126.7 111 64.0
PGSC0003DMG400014975 Solanum tuberosum HOM05D005693 ORTHO05D006826 2.2e-27 126.3 81 76.5
TPR.G18210 Trifolium pratense HOM05D005693 ORTHO05D006826 2.2e-27 126.3 80 80.0
RcHm_v2.0_Chr2g0145321 Rosa chinensis HOM05D005693 ORTHO05D006826 4.9e-27 125.2 74 82.4
Duzib093G0150 Durio zibethinus HOM05D005693 ORTHO05D006826 4.1e-26 122.1 205 42.0
AagrBONN_evm.TU.Sc2ySwM_368.2514 Anthoceros agrestis HOM05D005693 ORTHO05D006826 5.4e-26 121.7 235 34.0
Mapoly0031s0152 Marchantia polymorpha HOM05D005693 ORTHO05D006826 7.8e-25 117.9 236 34.3
QL07p023915 Quercus lobata HOM05D005693 ORTHO05D006826 2.5e-23 112.8 193 42.0
QL93p0118_0012 Quercus lobata HOM05D005693 ORTHO05D006826 2.5e-23 112.8 193 42.0
FAN25G3535 Fragaria x ananassa HOM05D011417 ORTHO05D006826 5.6e-23 111.7 89 67.4
Pp3c19_16310 Physcomitrium patens HOM05D005693 ORTHO05D006826 2.9e-19 99.4 76 59.2
CBR_g23093 Chara braunii HOM05D005693 ORTHO05D006826 2.7e-17 92.8 233 30.0
Glyma.14G019600 Glycine max HOM05D005693 ORTHO05D006826 7.3e-15 84.7 69 66.7
VMungo1383G1390 Vigna mungo HOM05D005693 ORTHO05D006826 9.5e-15 84.3 53 75.5
HanXRQChr08g0219081 Helianthus annuus HOM05D005693 ORTHO05D006826 1.2e-14 84.0 71 66.2
CDE05G0559 Ceratophyllum demersum HOM05D005693 ORTHO05D006826 1.6e-14 83.6 53 79.2
TAR623G0675 Trochodendron aralioides HOM05D005693 ORTHO05D006826 1.1e-13 80.9 53 77.4
Atru.chr8.1121 Acer truncatum HOM05D005693 ORTHO05D006826 1.4e-13 80.5 56 75.0
TPR.G18219 Trifolium pratense HOM05D005693 ORTHO05D006826 1.8e-13 80.1 51 76.5
Lsat_1_v5_gn_8_18181 Lactuca sativa HOM05D005693 ORTHO05D006826 5.2e-13 78.6 54 77.8
Psat6g106320 Pisum sativum HOM05D005693 ORTHO05D006826 5.2e-13 78.6 51 74.5
Hma1.2p1_0648F.1_g195116 Hydrangea macrophylla HOM05D005693 ORTHO05D006826 4.4e-12 75.5 53 71.7
arahy.Tifrunner.gnm1.ann1.WY0JR2 Arachis hypogaea HOM05D005693 ORTHO05D015958 2.2e-11 73.2 54 68.5
Os02g0832700 Oryza sativa ssp. japonica HOM05D005693 ORTHO05D006826 3.7e-11 72.4 53 67.9
MBI06_g05821_MAGBIO Magnolia biondii HOM05D005693 ORTHO05D006826 4.9e-11 72.0 53 66.0
QL93p0118_0004 Quercus lobata HOM05D005693 ORTHO05D006826 8.3e-11 71.2 51 72.5
QL07p023907 Quercus lobata HOM05D005693 ORTHO05D006826 2.4e-10 69.7 50 72.0
Atru.chr5.2645 Acer truncatum HOM05D005693 ORTHO05D006826 3.2e-10 69.3 53 69.8
Atru.chr9.1297 Acer truncatum HOM05D005693 ORTHO05D006826 3.2e-10 69.3 53 69.8
CDE05G0078 Ceratophyllum demersum HOM05D005693 ORTHO05D006826 5.1e-08 62.0 57 56.1
Actinidia22039 Actinidia chinensis HOM05D005693 ORTHO05D006826 9.5e-07 57.8 36 77.8


User provided reference genes

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