Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 5.9e-170 600.9 332 100.0
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 2.4e-118 429.5 306 77.5
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 9.0e-118 427.6 324 75.3
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 9.3e-115 417.5 313 74.8
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 5.0e-108 395.2 310 71.9
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 3.3e-104 382.5 315 70.5
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 3.3e-104 382.5 315 70.8
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 5.7e-104 381.7 315 70.8
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 5.7e-104 381.7 324 70.7
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 9.7e-104 380.9 310 70.3
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 3.7e-103 379.0 315 68.9
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 3.1e-102 375.9 314 67.8
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 1.5e-101 373.6 321 61.4
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 1.5e-101 373.6 314 71.0
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 1.3e-100 370.5 326 67.8
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 3.8e-100 369.0 321 67.3
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 5.0e-100 368.6 314 69.1
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 1.9e-99 366.7 324 65.1
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 3.2e-99 365.9 318 67.3
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 4.2e-99 365.5 320 66.9
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 9.4e-99 364.4 317 67.5
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 1.2e-98 364.0 324 65.4
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 1.2e-98 364.0 327 66.7
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.2e-98 364.0 321 65.7
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 1.2e-98 364.0 329 65.3
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.6e-98 363.6 328 66.5
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 2.7e-98 362.8 322 66.8
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 6.1e-98 361.7 324 65.4
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 1.0e-97 360.9 331 62.5
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 6.7e-97 358.2 340 64.4
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 1.5e-96 357.1 329 62.6
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 1.5e-96 357.1 326 62.0
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 5.7e-96 355.1 317 66.6
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 7.4e-96 354.8 314 67.2
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 1.7e-95 353.6 308 65.9
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 2.8e-95 352.8 313 65.2
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 3.7e-95 352.4 318 65.1
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 3.7e-95 352.4 336 64.0
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 8.2e-95 351.3 308 67.9
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 2.4e-94 349.7 321 64.2
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 2.4e-94 349.7 324 62.3
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 5.3e-94 348.6 313 63.6
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 6.9e-94 348.2 308 62.7
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 6.9e-94 348.2 322 65.2
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 2.0e-93 346.7 334 61.7
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 1.0e-92 344.4 338 63.3
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 2.2e-92 343.2 318 64.5
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 5.0e-92 342.0 321 57.0
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 1.1e-91 340.9 317 62.8
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 1.1e-91 340.9 317 62.8
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 1.1e-91 340.9 306 60.5
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 1.4e-91 340.5 301 64.8
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 4.2e-91 339.0 318 62.9
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 7.2e-91 338.2 306 60.1
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 9.4e-91 337.8 308 63.0
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 1.2e-90 337.4 313 61.3
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 1.6e-90 337.0 315 61.0
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 1.6e-90 337.0 310 62.3
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 2.1e-90 336.7 324 61.4
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 3.6e-90 335.9 326 61.7
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 3.6e-90 335.9 326 61.7
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 1.1e-88 330.9 311 62.7
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 1.5e-88 330.5 316 63.3
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 2.0e-88 330.1 314 61.8
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 2.6e-88 329.7 310 64.2
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 4.4e-88 328.9 314 56.7
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 2.2e-87 326.6 311 61.1
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 4.8e-87 325.5 328 59.1
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 6.3e-87 325.1 321 58.6
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 1.1e-86 324.3 301 60.5
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 7.0e-86 321.6 326 57.7
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 1.6e-85 320.5 335 58.2
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 1.3e-84 317.4 326 58.6
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 5.0e-84 315.5 313 60.1
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 2.5e-83 313.2 313 56.5
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 4.2e-83 312.4 326 58.3
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 8.0e-82 308.1 322 55.9
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 2.3e-81 306.6 339 51.9
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 7.5e-80 301.6 400 46.0
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 6.3e-79 298.5 305 59.0
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 6.3e-79 298.5 305 59.0
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.1e-78 297.7 282 58.9
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 7.0e-78 295.0 361 53.2
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 7.0e-78 295.0 347 54.5
Dinv28889 Davidia involucrata HOM05D006103 ORTHO05D007468 2.0e-77 293.5 218 68.8
GSVIVG01013285001 Vitis vinifera HOM05D006103 ORTHO05D007468 7.7e-77 291.6 197 74.6
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 2.5e-75 286.6 261 64.0
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 1.8e-73 280.4 306 57.8
CANSAT21G0160 Cannabis sativa HOM05D001479 ORTHO05D007468 1.5e-72 277.3 187 74.3
CANSAT21G1035 Cannabis sativa HOM05D006103 ORTHO05D007468 1.5e-72 277.3 187 74.3
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 2.6e-72 276.6 302 57.0
Sc22g0001160 Simmondsia chinensis HOM05D006103 ORTHO05D007468 3.4e-72 276.2 197 71.1
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 7.5e-72 275.0 269 61.7
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 8.3e-71 271.6 311 49.8
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 3.1e-70 269.6 320 51.2
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 7.0e-70 268.5 255 60.0
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 1.3e-68 264.2 320 50.9
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 4.2e-67 259.2 275 59.3
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 5.5e-67 258.8 312 51.9
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 4.4e-64 249.2 342 50.3
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 1.5e-56 224.2 238 60.5
HPP92_014398 Vanilla planifolia HOM05D006103 ORTHO05D007468 7.5e-56 221.9 192 54.2
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 2.2e-55 220.3 213 61.5
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 2.2e-55 220.3 326 46.3
BolC8t50609H Brassica oleracea HOM05D006103 ORTHO05D007468 2.7e-53 213.4 159 66.0
SMO171G0121 Selaginella moellendorffii HOM05D006103 ORTHO05D007468 3.4e-48 196.4 320 42.2
C08p30000 Brassica napus HOM05D006103 ORTHO05D007468 2.2e-47 193.7 145 66.2
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 2.4e-46 190.3 199 51.8
Lj8A284T15 Lonicera japonica HOM05D006103 ORTHO05D007468 2.3e-44 183.7 156 60.3
AagrBONN_evm.TU.Sc2ySwM_368.2081 Anthoceros agrestis HOM05D006103 ORTHO05D007468 6.2e-42 175.6 310 41.0
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 5.1e-36 156.0 409 31.1
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 7.6e-32 142.1 151 66.9
SHI06573 Sapria himalayana HOM05D006103 ORTHO05D007468 1.1e-30 138.3 129 58.9
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 3.8e-23 113.2 347 28.5
Actinidia02205 Actinidia chinensis HOM05D006103 ORTHO05D007468 5.4e-22 109.4 77 72.7
Lj8A284T12 Lonicera japonica HOM05D006103 ORTHO05D007468 5.1e-20 102.8 140 44.3
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 1.1e-19 101.7 184 36.4
Cfa012348 Carpinus fangiana HOM05D006103 ORTHO05D007468 2.4e-17 94.0 79 57.0
COL.COLO4_06694 Corchorus olitorius HOM05D006103 ORTHO05D007468 4.0e-17 93.2 87 59.8
SHI06574 Sapria himalayana HOM05D006103 ORTHO05D007468 3.4e-16 90.1 144 40.3
Cre03.g170100 Chlamydomonas reinhardtii HOM05D006103 ORTHO05D007468 4.2e-14 83.2 145 37.2
Actinidia25920 Actinidia chinensis HOM05D006103 ORTHO05D007468 5.4e-14 82.8 79 58.2
Lj8C284T4 Lonicera japonica HOM05D006103 ORTHO05D007468 7.1e-14 82.4 52 67.3
RcHm_v2.0_Chr6g0308851 Rosa chinensis HOM05D006103 ORTHO05D007468 9.3e-14 82.0 53 73.6
Carub.0008s0069 Capsella rubella HOM05D006103 ORTHO05D007468 4.6e-13 79.7 53 71.7
CARHR174410 Cardamine hirsuta HOM05D006103 ORTHO05D007468 1.5e-11 74.7 48 75.0
Rhsim04G0176300 Rhododendron simsii HOM05D006103 ORTHO05D007468 1.1e-09 68.6 55 61.8
Lj8A280T20 Lonicera japonica HOM05D006103 ORTHO05D007468 6.9e-09 65.9 40 82.5
Ah.07g199910 Amaranthus hybridus HOM05D006103 ORTHO05D007468 2.9e-07 60.5 61 54.1


User provided reference genes

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