Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 0.0e+00 1691.4 952 100.0
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 0.0e+00 1157.1 956 69.8
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 0.0e+00 1149.0 967 68.7
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 0.0e+00 1122.1 943 69.7
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 0.0e+00 1117.8 955 68.7
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 0.0e+00 1117.1 947 68.4
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 0.0e+00 1113.6 955 67.9
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 0.0e+00 1112.8 943 68.8
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 0.0e+00 1105.9 952 69.6
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 0.0e+00 1101.7 948 69.3
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 0.0e+00 1092.8 957 69.9
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 0.0e+00 1076.2 965 65.6
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 4.9e-310 1067.8 927 64.6
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 2.7e-308 1062.0 938 68.0
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 6.0e-308 1060.8 959 65.9
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 1.8e-307 1059.3 992 64.4
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 4.3e-298 1028.1 966 64.9
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 1.3e-297 1026.5 938 65.2
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 3.1e-296 1021.9 929 65.6
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 4.6e-292 1008.1 968 63.2
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 4.6e-292 1008.1 951 64.9
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 3.0e-291 1005.4 957 63.8
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 5.1e-291 1004.6 945 63.0
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 2.2e-289 999.2 995 61.4
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 1.1e-288 996.9 951 63.9
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 4.1e-288 995.0 868 66.4
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 1.3e-286 989.9 969 64.4
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 2.2e-286 989.2 925 62.1
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 3.7e-281 971.8 977 62.9
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 6.3e-281 971.1 949 62.8
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 8.5e-278 960.7 936 59.4
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 1.6e-276 956.4 954 61.4
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 4.7e-276 954.9 944 62.6
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 6.1e-276 954.5 978 59.5
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 1.1e-274 950.3 942 61.5
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 2.6e-274 949.1 929 59.5
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 2.8e-273 945.7 1073 56.1
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 1.2e-271 940.3 962 59.9
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 4.2e-269 931.8 921 59.0
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 5.5e-269 931.4 953 59.2
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 7.2e-269 931.0 951 59.3
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.1e-268 929.5 983 59.4
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 6.1e-268 927.9 968 58.3
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 8.0e-268 927.5 930 60.3
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 1.1e-266 923.7 960 61.4
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 2.0e-266 922.9 937 60.4
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 1.7e-265 919.8 937 59.2
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 6.3e-265 917.9 949 57.6
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 7.0e-264 914.4 963 59.4
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 1.0e-262 910.6 933 59.3
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 5.0e-262 908.3 910 62.2
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 8.5e-262 907.5 960 59.8
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 1.5e-261 906.7 959 59.3
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 2.5e-261 906.0 955 57.9
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 5.5e-261 904.8 969 57.8
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 1.2e-260 903.7 982 58.0
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 1.8e-259 899.8 944 60.2
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 4.0e-259 898.7 964 56.7
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 6.8e-259 897.9 935 60.0
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 2.0e-258 896.3 946 59.2
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 4.4e-258 895.2 958 59.1
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 1.4e-256 890.2 950 59.3
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 3.1e-256 889.0 937 59.9
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 4.1e-256 888.6 950 57.5
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.2e-255 887.1 955 59.6
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 1.2e-255 887.1 974 56.5
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 1.7e-254 883.2 951 57.0
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 7.2e-253 877.9 990 56.2
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 1.8e-251 873.2 933 57.8
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 2.3e-251 872.8 946 56.9
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 5.2e-251 871.7 992 55.9
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 2.6e-250 869.4 950 56.2
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 4.4e-250 868.6 983 57.3
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 9.8e-250 867.5 951 56.3
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 4.8e-249 865.1 857 61.5
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 4.8e-249 865.1 945 54.5
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 4.8e-249 865.1 960 56.6
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 4.1e-248 862.1 947 55.8
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 2.7e-247 859.4 1031 54.5
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 5.0e-246 855.1 942 53.2
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 3.6e-244 849.0 961 57.0
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 8.0e-244 847.8 949 57.2
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 1.4e-243 847.0 974 55.6
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 4.5e-239 832.0 950 55.6
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 1.0e-238 830.9 947 55.5
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 1.0e-238 830.9 947 56.6
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 3.3e-237 825.9 941 52.8
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 4.0e-235 818.9 954 55.0
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 1.2e-234 817.4 958 54.3
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 2.3e-227 793.1 934 54.0
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 4.6e-223 778.9 880 53.9
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 6.8e-219 765.0 832 58.4
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 2.0e-218 763.5 967 51.4
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 4.0e-195 686.0 948 49.4
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 2.9e-177 626.7 959 44.7
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.9e-173 614.0 978 44.6
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 1.9e-173 614.0 942 43.4
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 1.7e-169 600.9 443 67.3
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 4.7e-159 566.2 646 62.2
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 2.8e-156 557.0 394 72.8
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 1.1e-155 555.1 700 52.0
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 1.2e-154 551.6 584 59.8
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 6.8e-134 482.6 517 61.9
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 3.9e-121 440.3 625 45.9
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 5.6e-112 409.8 913 38.0
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.7e-98 364.4 498 51.4
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.2e-95 355.5 267 71.2
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 6.8e-94 349.7 611 43.9
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 1.6e-90 338.6 328 64.3
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 8.7e-89 332.8 330 61.5
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 1.0e-73 282.7 319 58.0
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 4.6e-66 257.3 261 52.1
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.3e-65 255.0 339 56.0
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 7.4e-64 250.0 963 29.3
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 1.6e-63 248.8 286 54.9
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 4.8e-63 247.3 411 47.2
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.2e-60 238.4 263 50.6
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.5e-59 235.0 192 62.5
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 8.5e-52 209.9 388 42.0
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 1.1e-46 193.0 1141 26.8
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.4e-30 139.4 330 42.7
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.2e-29 136.3 117 66.7
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.7e-29 135.2 107 69.2
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 3.5e-29 134.8 700 25.0
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 7.7e-29 133.7 124 63.7
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 2.2e-28 132.1 345 42.3
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 6.5e-28 130.6 132 56.1
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.9e-27 129.0 132 55.3
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 1.2e-26 126.3 98 65.3
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 1.2e-26 126.3 255 38.8
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 2.7e-26 125.2 787 26.6
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 7.5e-24 117.1 122 55.7
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 8.3e-23 113.6 118 55.9
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.9e-19 102.4 115 53.9
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 4.2e-19 101.3 89 59.6
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 1.2e-18 99.8 89 59.6
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.6e-16 92.0 69 71.0
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.7e-15 89.4 94 55.3
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.7e-15 88.2 56 78.6
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 6.3e-15 87.4 207 31.9
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 1.1e-14 86.7 72 68.1
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.4e-14 85.5 53 83.0
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 7.0e-14 84.0 83 55.4
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.0e-12 80.1 53 81.1
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.9e-11 75.9 54 72.2
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 2.3e-09 68.9 58 62.1
Dinv34035 Davidia involucrata HOM05D004844 ORTHO05D006036 3.0e-09 68.6 47 74.5
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 3.7e-07 61.6 89 47.2


User provided reference genes

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