Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 1.2e-261 906.0 456 100.0
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 4.6e-181 638.3 432 73.4
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 5.8e-176 621.3 426 70.2
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 1.0e-175 620.5 463 70.2
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 1.3e-175 620.2 447 67.1
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 2.2e-175 619.4 468 67.3
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 2.5e-174 615.9 440 70.9
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 3.2e-174 615.5 451 67.8
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 9.3e-174 614.0 456 67.8
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 1.3e-172 610.1 449 67.0
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 8.7e-172 607.4 459 66.2
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 3.3e-171 605.5 462 67.3
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 4.3e-171 605.1 433 68.8
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 2.8e-170 602.4 430 67.9
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.8e-170 602.4 430 67.9
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 4.8e-170 601.7 507 62.7
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.4e-169 599.4 444 66.2
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 2.4e-169 599.4 454 67.6
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 1.5e-168 596.7 395 72.7
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 1.5e-168 596.7 447 68.0
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 4.5e-168 595.1 403 72.2
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 7.6e-168 594.3 395 74.7
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.7e-167 593.2 433 69.5
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.8e-167 592.0 395 73.4
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 5.0e-167 591.7 449 67.3
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.1e-166 590.5 416 70.2
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.4e-166 590.1 462 64.1
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 7.2e-166 587.8 424 67.2
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 7.2e-166 587.8 409 68.5
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 9.3e-166 587.4 407 71.5
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 1.2e-165 587.0 403 70.2
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 6.1e-165 584.7 495 63.6
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 7.9e-165 584.3 424 67.9
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 1.3e-164 583.6 443 64.6
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 1.3e-164 583.6 407 69.0
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 3.9e-164 582.0 424 65.6
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 5.1e-164 581.6 408 68.6
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 1.1e-163 580.5 425 66.4
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 1.1e-163 580.5 425 66.4
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 1.9e-163 579.7 453 63.6
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 2.5e-163 579.3 395 67.8
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 5.7e-163 578.2 399 69.4
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 5.7e-163 578.2 409 67.2
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 7.4e-163 577.8 395 67.8
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 7.4e-163 577.8 395 67.8
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 7.4e-163 577.8 397 71.8
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 9.7e-163 577.4 440 67.5
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 1.3e-162 577.0 393 70.7
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 1.3e-162 577.0 446 65.2
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 1.6e-162 576.6 365 74.2
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 2.2e-162 576.2 416 67.5
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 2.8e-162 575.9 402 67.2
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 8.2e-162 574.3 405 67.4
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 1.1e-161 573.9 423 65.5
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 1.4e-161 573.5 399 68.7
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 1.8e-161 573.2 456 65.8
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.8e-161 573.2 440 66.8
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.8e-161 573.2 495 61.4
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 2.4e-161 572.8 422 65.2
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 2.4e-161 572.8 363 72.7
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 3.1e-161 572.4 453 64.0
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 5.3e-161 571.6 371 73.9
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 5.3e-161 571.6 428 65.4
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 3.4e-160 568.9 362 74.0
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 1.3e-159 567.0 455 63.7
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 2.9e-159 565.8 356 75.0
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 3.8e-159 565.5 365 71.2
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 6.5e-159 564.7 380 70.5
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 1.1e-158 563.9 398 67.1
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 1.1e-158 563.9 441 63.5
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 1.1e-158 563.9 446 63.0
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 1.9e-158 563.1 398 67.1
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 5.5e-158 561.6 452 62.2
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 5.5e-158 561.6 452 62.6
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 9.4e-158 560.8 397 66.8
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 9.4e-158 560.8 451 62.7
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 1.6e-157 560.1 474 61.6
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 2.7e-157 559.3 420 64.8
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 4.6e-157 558.5 365 71.0
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 7.9e-157 557.8 449 63.3
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 1.0e-156 557.4 398 66.3
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 1.0e-156 557.4 398 66.3
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 1.4e-156 557.0 449 63.0
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 6.7e-156 554.7 381 68.8
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 6.7e-156 554.7 466 60.5
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 4.4e-155 552.0 359 72.7
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 7.4e-155 551.2 430 63.3
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 9.7e-155 550.8 333 77.5
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 6.3e-154 548.1 452 61.1
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 8.2e-154 547.7 455 61.1
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 8.2e-154 547.7 362 68.8
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 6.9e-153 544.7 357 69.7
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 4.5e-152 542.0 453 60.3
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 8.5e-151 537.7 364 69.5
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 1.4e-150 537.0 546 52.6
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 1.4e-150 537.0 357 69.5
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 2.5e-150 536.2 430 60.7
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 5.5e-150 535.0 424 62.3
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 1.0e-148 530.8 444 63.7
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.3e-148 529.6 333 76.6
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 8.8e-148 527.7 427 64.6
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 2.6e-147 526.2 593 51.1
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 3.3e-147 525.8 416 62.3
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 7.4e-147 524.6 468 59.2
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 3.7e-146 522.3 470 59.1
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 8.2e-146 521.2 383 65.3
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 8.2e-146 521.2 385 63.4
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 7.0e-145 518.1 329 73.6
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 5.9e-144 515.0 373 67.3
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 8.5e-143 511.1 343 69.7
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 8.5e-143 511.1 343 69.7
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 4.1e-137 492.3 319 71.2
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 4.5e-136 488.8 394 60.9
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.7e-135 486.9 365 67.1
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.5e-134 483.0 365 66.8
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 4.2e-134 482.3 477 55.8
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 6.8e-132 474.9 397 61.5
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.5e-131 473.8 309 71.8
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.1e-129 466.1 401 60.1
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 7.7e-128 461.5 382 57.3
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 7.7e-128 461.5 434 52.1
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 3.0e-124 449.5 292 71.6
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 8.9e-124 448.0 353 58.9
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 7.5e-123 444.9 384 52.1
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 2.9e-119 433.0 353 60.3
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 1.4e-116 424.1 411 51.8
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 2.6e-115 419.9 382 53.9
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 5.4e-113 412.1 335 64.5
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 1.8e-108 397.1 377 50.9
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 1.2e-107 394.4 248 72.6
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 9.2e-105 384.8 249 72.3
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 3.5e-104 382.9 217 81.1
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 1.7e-103 380.6 255 72.5
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 2.1e-93 347.1 206 78.6
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 2.9e-82 310.1 368 42.9
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 2.8e-69 266.9 177 72.3
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 9.0e-68 261.9 300 44.0
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 1.9e-62 244.2 274 45.3
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 1.2e-48 198.4 176 56.8
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 5.1e-39 166.4 152 59.2
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.7e-34 151.4 93 74.2
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 3.2e-33 147.1 82 82.9
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 1.3e-21 108.6 95 60.0
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 2.2e-21 107.8 77 62.3
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 2.0e-19 101.3 108 48.1
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 1.0e-18 99.0 93 51.6
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.3e-18 98.6 62 74.2
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 7.2e-17 92.8 56 73.2
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 7.2e-17 92.8 56 73.2
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 7.2e-17 92.8 56 73.2
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.1e-16 91.3 56 71.4
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 8.0e-16 89.4 55 70.9
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 5.7e-14 83.2 54 66.7
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 4.8e-13 80.1 74 59.5
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 8.0e-08 62.8 77 46.8
Gohir.D02G161780 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.4e-07 62.0 36 75.0
Gohir.D10G176966 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.4e-07 62.0 36 75.0
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 8.9e-07 59.3 32 78.1
Gorai.011G197900 Gossypium raimondii HOM05D004519 ORTHO05D017048 2.6e-06 57.8 36 72.2


User provided reference genes

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