Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 5.7e-251 870.5 468 100.0
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 2.3e-175 619.4 463 70.6
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.7e-162 576.6 462 68.8
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 2.3e-159 566.2 474 65.6
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 1.3e-157 560.5 481 64.7
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 1.5e-155 553.5 454 65.4
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 3.4e-155 552.4 469 63.8
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 4.5e-155 552.0 472 64.8
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 6.4e-154 548.1 467 64.9
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 6.4e-154 548.1 411 69.8
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 8.4e-154 547.7 472 63.8
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 2.5e-153 546.2 466 62.7
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 4.2e-153 545.4 469 61.2
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 5.5e-153 545.0 467 63.2
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.1e-152 543.1 469 62.0
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 4.6e-152 542.0 464 65.3
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.8e-151 540.0 471 62.4
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 6.7e-151 538.1 468 62.6
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 1.6e-149 533.5 469 63.1
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.1e-149 533.1 453 64.2
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 8.2e-149 531.2 467 63.2
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 3.1e-148 529.3 473 62.6
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 5.8e-147 525.0 471 61.8
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 3.8e-146 522.3 471 61.8
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 4.9e-146 521.9 459 60.3
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.0e-143 514.2 469 57.8
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 3.9e-143 512.3 468 60.5
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 1.5e-142 510.4 458 60.5
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.9e-142 510.0 469 57.4
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 7.4e-142 508.1 469 57.4
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 1.6e-141 506.9 469 59.1
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 4.8e-141 505.4 458 60.5
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 8.2e-141 504.6 435 64.4
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 8.2e-141 504.6 467 57.4
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 2.4e-140 503.1 470 57.7
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 6.9e-140 501.5 470 58.1
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 2.6e-139 499.6 463 57.5
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.5e-139 498.8 470 58.1
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 2.2e-138 496.5 475 57.3
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 6.5e-138 495.0 471 57.7
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 2.5e-137 493.0 474 57.0
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 3.2e-137 492.7 466 59.2
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 7.2e-137 491.5 466 57.7
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 1.6e-136 490.3 471 56.1
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 1.6e-136 490.3 471 56.3
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 2.7e-136 489.6 472 57.8
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 2.7e-136 489.6 474 57.2
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 2.7e-136 489.6 472 55.9
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 2.7e-136 489.6 470 57.4
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 6.1e-136 488.4 471 57.5
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 6.1e-136 488.4 471 57.5
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 7.9e-136 488.0 470 57.9
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 7.9e-136 488.0 471 56.9
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 5.1e-135 485.3 464 57.5
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.0e-134 483.4 465 55.5
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 4.3e-134 482.3 472 60.0
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 4.8e-133 478.8 466 57.5
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 3.1e-132 476.1 467 58.5
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 4.1e-132 475.7 476 57.6
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 2.6e-131 473.0 445 59.6
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 4.5e-131 472.2 474 58.2
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.0e-130 471.1 474 58.0
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.0e-130 471.1 469 55.2
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 8.5e-130 468.0 462 57.1
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 8.8e-127 458.0 466 55.4
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 3.3e-126 456.1 473 55.4
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 3.3e-126 456.1 693 43.0
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 7.4e-126 454.9 470 56.8
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 9.7e-126 454.5 434 57.6
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 9.7e-126 454.5 377 64.5
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.8e-125 453.0 464 54.5
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 3.7e-125 452.6 377 64.7
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 5.5e-121 438.7 385 61.3
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.0e-119 434.5 549 46.1
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 2.6e-118 429.9 398 59.3
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 2.2e-117 426.8 393 58.8
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 3.7e-117 426.0 534 50.0
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.2e-115 421.0 422 54.5
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 1.2e-115 421.0 433 55.2
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 7.7e-115 418.3 502 49.8
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 5.5e-113 412.1 415 54.2
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 2.1e-112 410.2 445 53.5
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 2.3e-111 406.8 386 58.0
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 2.0e-107 393.7 322 62.1
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 3.5e-107 392.9 509 51.1
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 7.7e-107 391.7 464 49.8
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 1.7e-106 390.6 291 67.4
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 3.8e-106 389.4 369 58.0
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 2.3e-103 380.2 477 48.0
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 4.0e-103 379.4 471 49.7
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 1.3e-101 374.4 429 52.0
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.7e-99 366.7 291 62.2
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 2.9e-98 363.2 491 47.7
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.9e-97 360.5 354 58.8
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 3.3e-97 359.8 373 55.5
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 5.5e-97 359.0 343 57.4
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 2.8e-96 356.7 356 56.2
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 4.7e-96 355.9 411 50.4
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 2.3e-95 353.6 274 65.7
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 2.0e-94 350.5 484 45.2
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 6.3e-93 345.5 480 45.8
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.1e-88 330.5 265 61.5
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.4e-87 327.8 319 57.7
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 4.4e-86 322.8 254 62.6
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 2.0e-83 313.9 473 42.9
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 3.3e-81 306.6 294 56.8
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 9.2e-76 288.5 229 62.4
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 1.1e-73 281.6 381 44.6
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 3.3e-73 280.0 518 37.5
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.6e-72 277.7 242 58.3
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 2.4e-68 263.8 445 37.3
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.6e-64 251.1 308 50.0
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 3.1e-63 246.9 316 49.1
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 4.9e-61 239.6 169 69.8
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 1.1e-60 238.4 296 45.9
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.1e-48 197.6 159 61.6
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.3e-42 177.6 442 34.2
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 8.7e-42 175.6 209 55.0
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 6.5e-37 159.5 547 30.5
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 7.1e-36 156.0 175 51.4
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 6.7e-34 149.4 105 67.6
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 7.4e-33 146.0 574 29.8
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.4e-30 137.1 167 50.3
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 3.2e-28 130.6 517 29.0
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 7.2e-28 129.4 142 52.1
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 1.7e-21 108.2 127 47.2
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 1.1e-20 105.5 84 65.5
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 5.5e-20 103.2 116 55.2
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 6.1e-19 99.8 146 47.3
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.5e-17 95.1 65 76.9
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 2.5e-17 94.4 123 41.5
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.3e-17 94.0 67 68.7
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.4e-17 92.8 84 57.1
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.7e-16 91.7 75 64.0
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.7e-16 90.5 75 62.7
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 1.1e-15 89.0 97 54.6
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.4e-15 87.8 75 62.7
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 9.4e-12 75.9 81 59.3
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 8.8e-10 69.3 54 66.7
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 8.8e-10 69.3 82 48.8
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 3.7e-08 63.9 44 68.2
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.4e-07 61.2 46 63.0
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 4.1e-07 60.5 46 69.6
THA.LOC104827753 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 7.0e-07 59.7 52 59.6


User provided reference genes

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