Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 0.0e+00 1399.4 725 100.0
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 4.8e-180 635.6 721 54.2
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 2.6e-170 603.2 716 52.4
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 4.1e-155 552.7 728 46.8
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 1.7e-153 547.4 737 47.5
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 2.3e-150 537.0 705 47.9
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 4.3e-149 532.7 723 46.1
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 4.3e-149 532.7 773 45.1
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 2.0e-146 523.9 745 44.3
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 5.9e-146 522.3 714 46.1
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 2.5e-144 516.9 783 42.8
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 1.4e-142 511.1 725 45.2
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 7.4e-141 505.4 731 44.6
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 1.3e-137 494.6 571 52.5
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 1.4e-136 491.1 723 43.6
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 2.5e-136 490.3 658 46.8
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 3.2e-136 490.0 723 43.4
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 3.7e-132 476.5 724 41.9
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 1.6e-130 471.1 730 43.4
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 1.4e-123 448.0 728 41.1
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 3.1e-123 446.8 721 41.9
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 4.5e-122 443.0 743 42.7
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 2.9e-121 440.3 727 39.9
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 1.1e-120 438.3 732 40.2
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 1.4e-118 431.4 712 39.5
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 1.5e-117 427.9 731 39.5
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 3.4e-117 426.8 671 43.4
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.1e-115 421.8 703 40.7
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 2.4e-115 420.6 749 40.3
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 2.0e-114 417.5 708 40.5
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 2.7e-114 417.2 713 40.4
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 2.9e-113 413.7 724 40.5
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 1.1e-112 411.8 677 41.7
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 9.5e-112 408.7 706 39.7
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 8.0e-111 405.6 705 40.0
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 3.0e-110 403.7 910 34.9
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 2.0e-109 401.0 732 38.7
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 2.0e-109 401.0 732 38.7
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 3.7e-108 396.7 731 38.4
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 3.7e-108 396.7 718 40.0
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 8.3e-108 395.6 708 39.7
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 3.5e-106 390.2 719 38.2
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 5.9e-106 389.4 724 39.4
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 4.3e-104 383.3 738 38.1
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 7.3e-104 382.5 701 37.9
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 1.8e-102 377.9 725 36.6
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 2.9e-100 370.5 710 37.5
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 2.0e-98 364.4 728 35.6
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 3.5e-98 363.6 712 37.2
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 7.8e-98 362.5 725 36.8
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 6.6e-97 359.4 714 37.8
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 6.6e-97 359.4 714 37.8
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 6.6e-97 359.4 714 37.8
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 6.6e-97 359.4 647 37.7
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 6.6e-97 359.4 729 36.6
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 1.1e-96 358.6 729 37.3
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 3.3e-96 357.1 728 37.8
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 4.3e-96 356.7 670 37.3
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 9.5e-96 355.5 728 37.8
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 1.4e-94 351.7 802 35.0
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 2.2e-92 344.4 705 37.9
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 4.9e-92 343.2 680 37.6
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.1e-91 342.0 685 37.4
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 1.9e-91 341.3 709 36.1
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 1.2e-90 338.6 760 33.7
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 6.0e-90 336.3 885 32.4
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 7.8e-90 335.9 699 36.9
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 1.3e-89 335.1 711 35.6
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 5.1e-89 333.2 655 37.1
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 5.1e-89 333.2 726 35.0
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 8.6e-89 332.4 736 35.3
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 2.6e-85 320.9 591 37.7
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 3.7e-84 317.0 519 38.3
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 4.9e-84 316.6 780 32.6
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 8.3e-84 315.8 786 31.8
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 1.4e-83 315.1 701 35.1
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 1.9e-83 314.7 652 35.7
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 2.4e-83 314.3 506 40.7
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 8.6e-81 305.8 653 37.5
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 8.6e-81 305.8 659 36.3
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 3.6e-79 300.4 754 32.2
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 4.7e-79 300.1 330 54.5
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 1.9e-75 288.1 345 49.3
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 4.0e-70 270.4 509 36.9
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 2.5e-64 251.1 789 30.2
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 1.6e-63 248.4 414 41.3
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 1.3e-60 238.8 648 34.3
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 2.7e-58 231.1 269 48.3
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 3.7e-55 220.7 273 44.0
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 3.7e-47 194.1 226 48.7
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 1.1e-43 182.6 438 32.4
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 2.7e-42 177.9 382 35.3
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 6.7e-41 173.3 508 29.9
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 8.2e-39 166.4 704 24.3
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 1.8e-38 165.2 157 61.1
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 4.5e-37 160.6 351 34.5
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 8.5e-36 156.4 305 36.1
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 7.9e-34 149.8 314 36.0
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 8.8e-33 146.4 331 34.4
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 2.2e-31 141.7 515 27.4
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 1.9e-27 128.6 547 25.6
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 1.8e-25 122.1 290 33.8
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 2.6e-24 118.2 121 59.5
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 4.5e-21 107.5 161 47.2
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 7.7e-21 106.7 150 46.7
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 2.2e-20 105.1 133 51.1
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 3.8e-20 104.4 140 44.3
Hma1.2p1_1460F.1_g284990 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 5.0e-20 104.0 172 40.7
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 1.5e-19 102.4 341 27.9
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 8.0e-18 96.7 600 23.7
SMO367G0412 Selaginella moellendorffii HOM05D006140 ORTHO05D007834 1.8e-14 85.5 620 21.8
Hma1.2p1_1819F.1_g304030 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 7.0e-14 83.6 90 46.7
SEGI_32981 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 5.9e-13 80.5 260 25.8
TAR629G2830 Trochodendron aralioides HOM05D006140 ORTHO05D007834 2.2e-12 78.6 190 33.2
unitig_32.g10972 Utricularia gibba HOM05D006140 ORTHO05D007834 5.0e-12 77.4 159 35.8
GSVIVG01012998001 Vitis vinifera HOM05D006140 ORTHO05D007834 2.4e-06 58.5 64 50.0
Duzib084G0453 Durio zibethinus HOM05D006140 ORTHO05D007834 4.1e-06 57.8 145 34.5


User provided reference genes

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