Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 0.0e+00 2236.1 1166 100.0
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 0.0e+00 1428.7 1170 65.9
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 0.0e+00 1418.3 1186 64.7
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 0.0e+00 1395.6 1170 64.3
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 0.0e+00 1392.1 1211 62.6
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1384.8 1195 63.1
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 0.0e+00 1372.5 1213 62.4
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 0.0e+00 1369.4 1195 62.2
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 0.0e+00 1366.7 1200 62.4
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 0.0e+00 1365.1 1203 62.0
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1356.3 1193 61.9
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 0.0e+00 1341.3 1206 61.4
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 0.0e+00 1340.9 1210 61.2
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 0.0e+00 1339.7 1228 60.9
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1333.9 1195 60.8
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1330.1 1210 60.5
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1327.0 1173 61.9
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 0.0e+00 1325.5 1217 59.6
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1318.1 1195 60.4
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 0.0e+00 1301.2 1146 62.3
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 0.0e+00 1272.3 1146 60.9
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 0.0e+00 1242.3 1229 57.7
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 0.0e+00 1228.8 1187 57.9
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 0.0e+00 1212.2 1200 56.0
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1200.3 1217 56.5
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 0.0e+00 1187.9 1215 54.6
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 0.0e+00 1179.9 1156 58.0
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 0.0e+00 1176.8 1214 55.2
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1172.5 1219 53.9
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 0.0e+00 1167.5 1196 55.3
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 0.0e+00 1155.6 1182 54.5
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 0.0e+00 1149.8 1227 53.9
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 0.0e+00 1147.5 1196 54.1
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1144.8 1217 52.8
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 0.0e+00 1140.2 1196 53.0
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 0.0e+00 1133.2 1174 54.5
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 0.0e+00 1122.8 1349 49.4
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 0.0e+00 1120.1 1177 52.3
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 0.0e+00 1120.1 1177 52.3
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 0.0e+00 1117.8 1193 52.1
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 0.0e+00 1115.9 1201 52.0
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 0.0e+00 1114.0 1163 53.8
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 0.0e+00 1112.1 1177 53.4
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 0.0e+00 1105.9 1164 52.0
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 0.0e+00 1104.4 1196 52.3
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 0.0e+00 1103.2 1168 51.8
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 0.0e+00 1102.4 1193 51.6
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 0.0e+00 1101.3 1190 51.8
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 0.0e+00 1094.3 1238 52.0
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 0.0e+00 1087.8 1195 51.5
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 0.0e+00 1082.8 1199 53.0
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 0.0e+00 1079.7 1344 48.4
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 0.0e+00 1076.2 1192 51.2
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 8.0e-312 1074.7 1194 50.2
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 1.8e-309 1066.2 1098 54.2
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 2.6e-305 1052.4 841 66.3
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 4.6e-302 1041.6 1341 47.0
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 6.0e-302 1041.2 1201 50.7
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 1.1e-300 1036.9 855 65.8
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 2.5e-300 1035.8 1019 55.3
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 9.0e-298 1027.3 1152 52.2
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 1.6e-294 1016.5 1217 49.5
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 2.0e-289 999.6 1175 49.9
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 4.1e-282 975.3 1094 51.6
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 9.1e-282 974.2 1123 51.1
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 4.5e-281 971.8 1094 51.3
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 8.5e-280 967.6 1094 50.8
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 4.7e-278 961.8 1196 47.7
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 1.4e-277 960.3 1222 46.2
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 2.4e-274 949.5 1148 49.1
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 4.0e-269 932.2 1096 50.1
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 6.7e-269 931.4 1211 47.6
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 1.1e-263 914.1 1098 49.5
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 6.1e-254 881.7 1103 48.1
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 1.9e-247 860.1 898 56.0
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 9.2e-242 841.3 1200 43.2
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 7.8e-241 838.2 998 51.2
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 3.6e-238 829.3 1217 43.9
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 4.2e-218 762.7 886 51.1
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 4.3e-215 752.7 847 50.1
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 1.3e-206 724.5 949 46.2
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 6.4e-195 685.6 654 56.3
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 1.5e-188 664.5 486 71.6
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 4.3e-183 646.4 604 57.9
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 1.1e-181 641.7 1019 39.9
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 9.7e-175 618.6 1092 36.9
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 5.7e-167 592.8 609 56.7
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 5.3e-165 586.3 554 56.3
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 5.9e-164 582.8 1173 35.6
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 1.7e-158 564.7 579 55.1
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 8.0e-153 545.8 1152 36.2
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 2.0e-151 541.2 681 45.5
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.1e-146 525.4 769 41.4
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.7e-142 511.5 491 56.2
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 4.5e-140 503.4 594 50.0
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 7.5e-135 486.1 535 52.5
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 8.0e-129 466.1 552 46.9
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 6.6e-115 419.9 509 49.3
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 4.6e-100 370.5 802 33.5
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 3.5e-92 344.4 265 69.8
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.3e-89 335.9 365 52.1
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 1.8e-88 332.0 430 47.4
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 3.1e-80 304.7 418 43.8
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 1.5e-63 249.2 253 54.5
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.8e-62 244.6 175 72.6
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 1.1e-58 233.0 1152 24.9
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 3.1e-56 224.9 263 49.8
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 5.3e-56 224.2 257 51.0
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 1.5e-55 222.6 168 68.5
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 3.4e-55 221.5 170 67.6
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 7.2e-53 213.8 582 32.1
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.3e-50 204.9 235 52.3
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.4e-50 204.5 302 44.0
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 3.1e-48 198.4 250 46.0
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 8.5e-46 190.3 352 35.2
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 5.3e-40 171.0 134 64.9
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.0e-35 154.8 123 61.8
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 2.4e-32 145.6 176 48.3
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 3.6e-28 131.7 1143 20.8
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 8.0e-28 130.6 130 53.8
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 9.8e-26 123.6 117 59.8
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 1.5e-21 109.8 71 78.9
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 2.5e-21 109.0 359 28.1
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 5.6e-21 107.8 151 41.7
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 9.5e-21 107.1 126 47.6
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 9.5e-21 107.1 90 64.4
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 6.1e-20 104.4 90 61.1
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 5.2e-19 101.3 99 57.6
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 8.9e-19 100.5 99 53.5
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 2.0e-18 99.4 99 59.6
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.6e-18 99.0 67 71.6
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 4.9e-17 94.7 81 55.6
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 8.3e-17 94.0 110 46.4
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.7e-15 89.0 61 72.1
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 1.0e-14 87.0 102 48.0
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 3.9e-14 85.1 102 46.1
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 8.6e-14 84.0 99 52.5
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.1e-13 83.6 76 55.3
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.5e-13 82.4 99 51.5
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.4e-11 76.6 65 66.2
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.3e-11 75.9 74 52.7
Ah.10g034360 Amaranthus hybridus HOM05D000087 ORTHO05D005735 2.6e-10 72.4 91 45.1
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 9.8e-10 70.5 73 57.5
CARHR293850 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.9e-09 68.2 78 48.7
CSS0034676 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 8.3e-09 67.4 91 45.1
CARHR291380 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.1e-08 65.1 63 54.0
MBI04_g04803_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 4.1e-08 65.1 106 42.5
CARHR293860 Cardamine hirsuta HOM05D000087 ORTHO05D005735 9.2e-08 63.9 77 41.6
RcHm_v2.0_Chr7g0188101 Rosa chinensis HOM05D000087 ORTHO05D005735 1.6e-07 63.2 93 34.4
CSS0049190 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.6e-07 61.6 76 44.7
SalBow7G0393 Salvia bowleyana HOM05D022560 ORTHO05D005735 5.0e-06 58.2 64 53.1


User provided reference genes

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