Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 2.8e-260 901.4 436 100.0
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 9.4e-232 806.6 432 88.4
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 2.1e-231 805.4 433 87.3
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 2.1e-231 805.4 433 87.5
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 6.1e-231 803.9 432 88.4
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 6.1e-231 803.9 435 87.6
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 7.9e-231 803.5 435 88.3
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 5.1e-230 800.8 433 87.3
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 5.1e-230 800.8 435 87.1
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 8.8e-230 800.0 433 86.8
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.1e-229 799.7 435 87.8
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 1.5e-229 799.3 447 85.7
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.6e-229 798.5 435 87.8
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 5.7e-229 797.3 433 86.6
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 9.7e-229 796.6 435 86.9
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.3e-228 796.2 436 87.2
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 2.2e-228 795.4 433 86.8
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.1e-227 793.1 433 86.6
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.1e-227 791.6 435 86.2
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.1e-227 791.6 435 86.2
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 3.1e-227 791.6 435 85.7
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.1e-227 791.6 434 87.6
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 4.1e-227 791.2 435 86.2
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 1.2e-226 789.6 436 85.3
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 2.6e-226 788.5 433 86.4
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.0e-225 786.6 433 85.0
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 1.7e-225 785.8 435 85.7
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 1.7e-225 785.8 433 85.0
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 2.2e-225 785.4 433 85.5
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.9e-225 785.0 433 84.8
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 2.9e-225 785.0 431 84.9
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.9e-225 785.0 435 85.1
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 3.8e-225 784.6 474 80.8
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 6.5e-225 783.9 435 85.3
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 8.5e-225 783.5 433 84.8
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.1e-224 783.1 433 85.0
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 1.1e-224 783.1 435 84.6
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 2.5e-224 781.9 431 85.4
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 3.2e-224 781.6 435 84.8
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 5.5e-224 780.8 433 84.3
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 9.4e-224 780.0 431 85.4
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 2.7e-223 778.5 436 83.5
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 6.1e-223 777.3 435 83.7
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 8.0e-223 776.9 436 83.5
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 5.2e-222 774.2 433 86.4
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 5.2e-222 774.2 433 84.8
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 8.8e-222 773.5 435 83.9
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 3.3e-221 771.5 435 83.9
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 4.4e-221 771.2 435 85.3
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.3e-220 769.6 434 83.2
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 2.8e-220 768.5 430 83.3
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 2.8e-220 768.5 490 76.1
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 4.8e-220 767.7 433 83.8
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 1.1e-219 766.5 434 84.1
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 9.1e-219 763.5 433 82.7
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 2.6e-218 761.9 429 83.4
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 2.6e-218 761.9 431 83.1
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 3.5e-218 761.5 429 83.0
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 3.5e-218 761.5 429 83.0
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 4.5e-218 761.1 429 83.0
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 4.5e-218 761.1 430 83.0
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 5.9e-218 760.8 429 83.2
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 7.7e-218 760.4 429 83.0
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.7e-217 759.2 429 83.0
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.9e-216 755.7 429 82.1
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 1.9e-216 755.7 431 81.9
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 7.2e-216 753.8 430 81.6
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 1.2e-215 753.1 430 82.3
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 1.2e-215 753.1 435 80.9
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 2.1e-215 752.3 429 82.1
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 6.1e-215 750.7 444 80.4
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 8.0e-215 750.4 433 81.1
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 1.8e-214 749.2 429 81.4
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 2.3e-214 748.8 433 81.3
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 6.7e-214 747.3 442 80.5
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 8.8e-214 746.9 433 82.0
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 7.5e-213 743.8 433 80.1
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 9.7e-213 743.4 435 80.2
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 2.8e-212 741.9 429 81.1
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.8e-211 739.2 506 71.5
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 3.1e-211 738.4 406 87.4
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 3.5e-210 734.9 433 79.4
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 3.8e-209 731.5 521 70.6
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 5.0e-209 731.1 408 85.0
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 1.1e-208 729.9 431 79.4
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.1e-208 729.9 433 78.3
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 1.6e-207 726.1 403 86.1
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 8.0e-207 723.8 414 82.9
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 4.8e-204 714.5 435 77.5
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 4.1e-203 711.4 435 77.2
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 5.4e-203 711.1 389 87.7
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 5.0e-201 704.5 436 77.1
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 3.0e-198 695.3 403 80.6
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 2.2e-196 689.1 435 75.6
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.7e-194 682.2 436 75.7
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 5.0e-193 677.9 428 75.0
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 7.3e-192 674.1 436 72.9
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 9.5e-192 673.7 435 73.1
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 1.2e-191 673.3 426 74.9
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 1.1e-187 660.2 439 70.2
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 1.9e-187 659.4 435 69.9
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.1e-184 650.2 435 68.5
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 6.8e-182 641.0 435 68.3
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 1.5e-181 639.8 427 70.5
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.3e-180 636.7 433 73.9
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 6.4e-180 634.4 341 88.0
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 4.6e-178 628.2 339 88.5
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.0e-177 627.1 427 69.8
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.0e-173 612.8 432 66.0
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 2.6e-173 612.5 330 87.9
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 4.9e-172 608.2 337 84.9
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.6e-170 603.2 384 75.8
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 3.4e-165 585.5 355 79.4
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.4e-163 580.1 436 62.6
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 3.2e-163 578.9 434 68.4
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 7.1e-163 577.8 437 62.9
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.0e-161 572.4 437 62.2
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 8.1e-159 564.3 438 62.1
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 6.9e-158 561.2 426 61.0
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.5e-152 543.5 291 89.0
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 4.2e-147 525.4 436 60.1
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.7e-146 522.7 340 72.9
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.1e-144 517.3 355 69.9
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 3.0e-137 492.7 382 65.4
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 2.3e-129 466.5 432 52.5
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 2.9e-116 422.9 352 63.1
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.9e-108 396.4 226 83.2
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 4.7e-106 389.0 241 77.2
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 6.3e-95 352.1 228 74.6
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 1.4e-81 307.8 190 74.7
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.8e-74 283.5 157 87.3
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.6e-72 276.9 176 75.0
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 1.6e-69 267.7 145 86.9
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 4.3e-67 259.6 197 68.5
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.7e-63 247.7 133 87.2
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 3.4e-56 223.4 229 55.0
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.8e-49 201.1 112 83.9
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.1e-46 191.8 107 79.4
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 2.8e-42 177.2 137 66.4
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.7e-37 160.6 88 86.4
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 3.3e-35 153.7 205 42.9
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 9.0e-33 145.6 165 49.1
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.5e-32 144.8 93 74.2
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 9.3e-30 135.6 82 80.5
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 4.8e-26 123.2 77 72.7
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 9.0e-25 119.0 67 76.1
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 4.5e-24 116.7 250 35.2
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 8.4e-23 112.5 72 66.7
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 4.6e-21 106.7 58 77.6
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 1.4e-17 95.1 63 71.4
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 1.7e-15 88.2 121 46.3
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 2.5e-14 84.3 94 50.0
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 1.6e-13 81.6 38 89.5
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 3.3e-11 73.9 98 44.9
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 1.6e-10 71.6 35 88.6
Phvul.008G164800 Phaseolus vulgaris HOM05D002051 ORTHO05D002041 2.8e-10 70.9 388 22.4
RcHm_v2.0_Chr6g0281181 Rosa chinensis HOM05D002051 ORTHO05D002041 5.3e-09 66.6 432 21.8
Nn5g28199 Nelumbo nucifera HOM05D002051 ORTHO05D002041 4.5e-08 63.5 389 23.4
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 2.2e-07 61.2 35 74.3
PGR142G2150 Punica granatum HOM05D002051 ORTHO05D002041 2.9e-07 60.8 386 22.8
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 5.0e-07 60.1 69 50.7


User provided reference genes

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