Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 1.6e-76 289.3 140 100.0
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-59 233.4 138 84.1
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.5e-53 212.2 157 68.8
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 8.1e-52 207.2 162 67.3
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 6.0e-47 191.0 163 64.4
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 2.3e-46 189.1 162 64.2
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 2.3e-46 189.1 162 64.2
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 2.3e-46 189.1 162 64.2
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 2.3e-46 189.1 162 64.2
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 2.3e-46 189.1 162 64.2
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 2.3e-46 189.1 162 64.2
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 2.3e-46 189.1 162 64.2
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 3.0e-46 188.7 158 65.8
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 3.9e-46 188.3 157 66.2
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 3.9e-46 188.3 157 66.2
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 3.9e-46 188.3 157 66.2
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 3.9e-46 188.3 157 66.2
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 3.9e-46 188.3 157 66.2
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 3.9e-46 188.3 157 66.2
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 3.9e-46 188.3 157 66.2
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 6.6e-46 187.6 162 63.6
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 8.6e-46 187.2 162 63.6
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 1.1e-45 186.8 162 63.6
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 1.1e-45 186.8 162 63.6
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 2.5e-45 185.7 169 62.1
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 7.3e-45 184.1 161 63.4
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 7.3e-45 184.1 161 63.4
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 7.3e-45 184.1 159 63.5
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 7.3e-45 184.1 157 64.3
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 7.3e-45 184.1 157 64.3
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 7.3e-45 184.1 164 62.8
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 9.6e-45 183.7 162 63.0
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 1.2e-44 183.3 155 65.8
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 1.2e-44 183.3 162 63.6
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 1.2e-44 183.3 162 63.6
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 2.1e-44 182.6 158 63.9
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 2.8e-44 182.2 157 63.7
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 2.8e-44 182.2 157 63.7
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 2.8e-44 182.2 157 63.7
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 2.8e-44 182.2 157 63.7
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 2.8e-44 182.2 157 63.7
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 2.8e-44 182.2 157 63.7
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 3.6e-44 181.8 164 62.2
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 6.2e-44 181.0 155 65.2
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 6.2e-44 181.0 155 65.2
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 6.2e-44 181.0 155 65.2
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 8.1e-44 180.6 152 65.8
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 1.8e-43 179.5 155 63.9
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 1.8e-43 179.5 155 63.9
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 1.8e-43 179.5 155 63.9
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 1.8e-43 179.5 155 63.9
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 3.1e-43 178.7 155 64.5
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 5.2e-43 177.9 140 66.4
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 6.9e-43 177.6 162 61.1
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 6.9e-43 177.6 162 61.1
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 1.2e-42 176.8 155 63.2
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 1.2e-42 176.8 155 63.2
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 5.8e-42 174.5 159 60.4
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 5.8e-42 174.5 133 67.7
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 9.9e-42 173.7 155 62.6
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 1.3e-41 173.3 129 70.5
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 2.9e-41 172.2 157 61.8
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 1.1e-40 170.2 155 61.3
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 1.9e-40 169.5 142 63.4
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 5.4e-40 167.9 159 59.1
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 4.6e-39 164.9 157 58.6
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 4.6e-39 164.9 157 58.6
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 3.0e-38 162.2 128 66.4
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 2.5e-37 159.1 158 57.6
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.5e-34 148.3 175 49.1
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 2.9e-33 145.6 152 57.9
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 3.8e-33 145.2 118 66.1
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 8.4e-33 144.1 159 51.6
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 1.4e-32 143.3 128 61.7
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 1.4e-32 143.3 128 61.7
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 1.4e-32 143.3 128 61.7
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 2.4e-32 142.5 128 61.7
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 6.7e-30 134.4 112 64.3
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.1e-29 133.7 121 61.2
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 1.9e-29 132.9 126 59.5
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 5.6e-29 131.3 141 53.2
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 5.6e-29 131.3 141 53.2
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 1.3e-28 130.2 108 62.0
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 1.6e-28 129.8 128 57.0
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 2.1e-28 129.4 108 64.8
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 8.1e-28 127.5 85 72.9
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 8.1e-28 127.5 85 72.9
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 8.1e-28 127.5 85 72.9
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 8.1e-28 127.5 85 72.9
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 8.1e-28 127.5 85 72.9
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 8.1e-28 127.5 85 72.9
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 8.1e-28 127.5 85 72.9
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.1e-27 125.6 110 59.1
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.1e-27 125.6 107 60.7
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 6.9e-27 124.4 65 89.2
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 6.9e-27 124.4 108 60.2
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 9.0e-27 124.0 129 57.4
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 9.0e-27 124.0 96 64.6
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 9.0e-27 124.0 107 60.7
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.2e-26 123.6 102 62.7
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 1.5e-26 123.2 132 53.0
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 3.4e-26 122.1 85 70.6
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 5.8e-26 121.3 96 63.5
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 5.8e-26 121.3 65 87.7
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 7.6e-26 120.9 108 58.3
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 9.9e-26 120.6 139 52.5
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.2e-25 119.4 96 63.5
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.9e-25 119.0 65 87.7
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 3.8e-25 118.6 116 56.9
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 3.2e-24 115.5 65 81.5
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 4.2e-24 115.2 70 78.6
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 4.2e-24 115.2 70 78.6
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 4.2e-24 115.2 70 78.6
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 5.5e-24 114.8 70 78.6
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 9.3e-24 114.0 70 77.1
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 9.3e-24 114.0 68 80.9
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 9.3e-24 114.0 89 64.0
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 1.2e-23 113.6 68 80.9
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 1.6e-23 113.2 155 43.2
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 2.1e-23 112.8 65 81.5
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 3.5e-23 112.1 96 58.3
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 4.6e-23 111.7 130 52.3
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 1.1e-21 107.1 85 61.2
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 1.1e-21 107.1 84 64.3
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 2.8e-20 102.4 112 54.5
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 2.8e-20 102.4 115 53.0
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 2.8e-20 102.4 115 53.0
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 2.6e-18 95.9 51 88.2
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 7.6e-18 94.4 51 86.3
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 1.0e-17 94.0 49 89.8
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 6.5e-17 91.3 49 87.8
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 5.5e-16 88.2 46 89.1
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 2.7e-15 85.9 85 54.1
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 3.5e-15 85.5 100 51.0
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 4.6e-15 85.1 74 59.5
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 7.9e-15 84.3 48 83.3
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 1.3e-14 83.6 88 54.5
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 1.8e-14 83.2 50 72.0
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 2.3e-14 82.8 102 49.0
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 2.3e-14 82.8 52 75.0
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.0e-14 82.4 83 53.0
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 3.9e-14 82.0 61 63.9
BraSC58t46463Z Brassica rapa HOM05D000533 ORTHO05D006151 5.1e-14 81.6 42 88.1
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 4.3e-13 78.6 90 48.9
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 1.3e-12 77.0 42 85.7
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 3.7e-12 75.5 89 47.2
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 6.3e-12 74.7 62 62.9
Potri.013G074950 Populus trichocarpa HOM05D000533 ORTHO05D006151 6.3e-12 74.7 44 77.3
Aa31LG5G21720 Aethionema arabicum HOM05D000533 ORTHO05D006151 3.1e-11 72.4 102 43.1
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 2.6e-10 69.3 44 77.3
BolSC37t60802H Brassica oleracea HOM05D000533 ORTHO05D006151 3.4e-10 68.9 45 77.8
BraSC25t45912Z Brassica rapa HOM05D000533 ORTHO05D006151 3.4e-10 68.9 44 79.5
Gohir.D01G099050 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.4e-10 68.9 40 82.5
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.4e-08 63.5 50 62.0
Hund17909 Selenicereus undatus HOM05D000533 ORTHO05D006151 4.2e-08 62.0 51 62.7
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 2.1e-07 59.7 39 71.8


User provided reference genes

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