Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 5.5e-84 314.3 165 100.0
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 6.6e-61 237.7 168 80.4
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 3.2e-55 218.8 163 66.9
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 3.9e-53 211.8 163 69.3
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 5.6e-52 208.0 163 64.4
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 2.1e-51 206.1 163 65.6
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 3.4e-49 198.7 165 66.7
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 1.3e-48 196.8 165 66.7
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 6.4e-48 194.5 163 62.6
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.9e-47 193.0 163 61.3
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 3.2e-47 192.2 163 60.7
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 2.7e-46 189.1 163 60.7
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 1.3e-45 186.8 200 55.0
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 5.1e-45 184.9 160 58.1
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 2.5e-44 182.6 166 59.0
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 3.3e-44 182.2 167 59.9
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 5.6e-44 181.4 165 60.0
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 5.6e-44 181.4 165 60.0
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 5.6e-44 181.4 162 58.6
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 7.3e-44 181.0 164 56.7
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 2.1e-43 179.5 164 56.1
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 3.6e-43 178.7 164 56.1
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 3.6e-43 178.7 264 42.0
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 8.1e-43 177.6 166 54.2
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 1.1e-42 177.2 166 54.2
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 1.1e-42 177.2 160 55.6
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 1.4e-42 176.8 166 54.2
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 2.3e-42 176.0 163 58.9
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 2.3e-42 176.0 163 61.3
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.1e-42 175.6 165 56.4
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.2e-41 173.7 163 57.7
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 2.0e-41 172.9 163 55.2
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 3.4e-41 172.2 170 59.4
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 9.9e-41 170.6 165 63.0
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 9.9e-41 170.6 242 45.5
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 1.3e-40 170.2 169 56.2
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.7e-40 169.9 161 55.3
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 4.9e-40 168.3 165 57.0
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 8.4e-40 167.5 167 53.9
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 1.4e-39 166.8 162 54.9
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.2e-38 163.7 160 60.0
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 2.1e-38 162.9 162 54.9
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.7e-38 162.5 167 49.1
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 2.7e-38 162.5 166 51.2
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 6.0e-38 161.4 168 51.8
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 7.8e-38 161.0 162 55.6
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.0e-37 160.6 162 57.4
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.7e-37 159.8 167 49.7
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 1.7e-37 159.8 168 51.8
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.7e-37 159.8 165 48.5
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.7e-37 159.8 160 55.6
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 3.0e-37 159.1 165 50.9
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 3.0e-37 159.1 165 52.7
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 5.1e-37 158.3 168 51.2
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 5.1e-37 158.3 170 50.6
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 5.1e-37 158.3 163 50.3
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 6.6e-37 157.9 160 56.2
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 8.6e-37 157.5 160 56.2
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 8.6e-37 157.5 163 52.1
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.5e-36 156.8 163 50.9
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 1.9e-36 156.4 168 50.6
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 3.3e-36 155.6 160 57.5
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 3.3e-36 155.6 163 51.5
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 7.3e-36 154.5 168 52.4
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 9.6e-36 154.1 168 50.0
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.2e-35 153.7 167 48.5
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 1.6e-35 153.3 163 54.0
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 2.8e-35 152.5 167 53.3
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 2.8e-35 152.5 167 53.3
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 4.7e-35 151.8 163 48.5
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.4e-34 150.2 163 48.5
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 4.0e-34 148.7 167 46.1
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 8.9e-34 147.5 162 50.6
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 8.9e-34 147.5 168 47.6
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 1.2e-33 147.1 162 51.9
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 1.2e-33 147.1 163 48.5
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.5e-33 146.7 166 56.6
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 9.9e-33 144.1 168 52.4
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 9.9e-33 144.1 161 50.3
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 9.9e-33 144.1 163 49.7
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 2.2e-32 142.9 164 48.8
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 2.2e-32 142.9 163 47.9
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 3.8e-32 142.1 151 56.3
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 4.9e-32 141.7 226 43.4
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 4.9e-32 141.7 166 47.6
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 6.4e-32 141.4 164 54.9
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 6.4e-32 141.4 168 44.6
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 8.4e-32 141.0 168 48.8
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.4e-31 140.2 163 47.9
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 1.4e-31 140.2 165 49.1
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 1.4e-31 140.2 164 48.2
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 1.4e-31 140.2 155 49.0
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.9e-31 139.8 165 45.5
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 2.4e-31 139.4 222 42.8
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 3.2e-31 139.0 162 47.5
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 3.2e-31 139.0 163 47.9
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 4.2e-31 138.7 191 48.7
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 5.4e-31 138.3 163 47.9
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 7.1e-31 137.9 159 51.6
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 9.3e-31 137.5 164 49.4
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.2e-30 137.1 164 53.7
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 2.1e-30 136.3 161 47.2
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 3.5e-30 135.6 163 50.3
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 3.5e-30 135.6 162 43.8
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 3.5e-30 135.6 162 43.8
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 4.6e-30 135.2 166 47.0
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 6.0e-30 134.8 192 43.2
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 7.8e-30 134.4 170 45.3
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 1.3e-29 133.7 164 45.1
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 1.1e-28 130.6 170 44.1
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 2.5e-28 129.4 155 45.8
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 4.3e-28 128.6 155 44.5
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 4.3e-28 128.6 165 45.5
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 7.3e-28 127.9 155 43.9
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 9.6e-28 127.5 153 47.1
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.3e-27 127.1 158 44.9
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 1.3e-27 127.1 153 47.1
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.3e-27 127.1 154 45.5
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 1.6e-27 126.7 163 44.2
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 3.6e-27 125.6 154 43.5
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 3.6e-27 125.6 154 43.5
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 6.2e-27 124.8 207 40.6
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 1.1e-26 124.0 153 45.8
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 1.1e-26 124.0 153 45.8
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 1.4e-26 123.6 156 42.3
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 1.8e-26 123.2 153 46.4
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 2.4e-26 122.9 155 43.2
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.2e-25 120.6 153 44.4
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 3.4e-25 119.0 161 50.9
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 5.8e-25 118.2 152 44.7
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 7.6e-25 117.9 120 50.8
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 9.9e-25 117.5 180 37.8
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 1.3e-24 117.1 164 42.1
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.9e-24 115.9 158 50.6
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 6.4e-24 114.8 104 54.8
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 9.3e-23 110.9 77 64.9
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 3.5e-22 109.0 142 41.5
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 2.3e-21 106.3 168 44.0
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 1.6e-19 100.1 165 38.2
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 4.8e-19 98.6 162 38.9
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 1.1e-18 97.4 99 49.5
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 1.8e-18 96.7 89 58.4
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.4e-18 96.3 76 57.9
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 1.5e-17 93.6 168 35.7
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 2.6e-17 92.8 74 59.5
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 5.8e-17 91.7 72 58.3
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 2.9e-16 89.4 78 53.8
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 1.9e-15 86.7 87 54.0
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 7.1e-15 84.7 80 50.0
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 2.1e-11 73.2 77 44.2
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 2.8e-11 72.8 103 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 6.2e-11 71.6 106 37.7
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.8e-10 70.1 98 41.8
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 2.4e-10 69.7 113 37.2
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 3.1e-10 69.3 44 70.5
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.2e-09 67.4 84 50.0
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 2.0e-09 66.6 87 47.1
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 2.6e-09 66.2 88 51.1


User provided reference genes

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