Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 5.4e-114 414.5 227 100.0
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 3.8e-75 285.4 228 74.1
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.9e-58 229.9 234 62.4
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.4e-56 223.8 233 61.8
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 2.3e-56 223.0 222 57.2
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 2.8e-54 216.1 231 61.5
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 8.2e-54 214.5 236 59.3
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 2.4e-53 213.0 231 57.1
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 4.1e-53 212.2 239 53.6
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 3.4e-52 209.1 237 55.7
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 1.6e-49 200.3 241 51.9
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 1.6e-49 200.3 241 51.9
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 3.6e-49 199.1 232 53.9
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.6e-49 199.1 227 58.1
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 7.9e-49 198.0 232 55.6
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.8e-48 196.8 242 51.2
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.1e-48 195.3 227 56.4
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.1e-48 195.3 227 56.4
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 4.4e-47 192.2 239 52.7
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 4.4e-47 192.2 239 52.7
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 4.4e-47 192.2 229 53.7
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.4e-47 192.2 231 49.4
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 4.4e-47 192.2 239 50.6
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 5.7e-47 191.8 236 50.8
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 1.3e-46 190.7 244 50.0
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.2e-46 189.9 228 50.0
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 3.7e-46 189.1 231 52.4
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 3.7e-46 189.1 246 50.4
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 6.3e-46 188.3 241 48.5
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 6.3e-46 188.3 249 50.2
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 1.8e-45 186.8 231 52.4
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 2.4e-45 186.4 234 52.6
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 4.1e-45 185.7 241 49.8
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 4.1e-45 185.7 255 48.6
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 4.1e-45 185.7 249 49.4
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 9.1e-45 184.5 236 52.5
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.2e-44 184.1 233 49.4
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 2.0e-44 183.3 239 48.5
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 2.6e-44 183.0 236 51.7
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 7.7e-44 181.4 228 50.0
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 1.7e-43 180.3 228 53.5
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.7e-43 180.3 242 51.2
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.7e-43 180.3 233 48.5
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.7e-43 180.3 250 46.8
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.8e-43 179.1 236 51.7
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 3.8e-43 179.1 235 52.3
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 8.5e-43 177.9 235 54.9
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.5e-42 176.4 228 51.3
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 5.5e-42 175.3 248 51.2
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 7.2e-42 174.9 230 50.9
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 1.6e-41 173.7 236 53.0
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.1e-41 173.3 245 44.9
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 2.7e-41 172.9 248 44.0
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.6e-41 172.6 234 49.6
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 3.6e-41 172.6 232 47.8
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 4.7e-41 172.2 245 50.2
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 6.1e-41 171.8 241 44.8
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.0e-40 171.0 252 45.2
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.3e-40 169.9 241 45.6
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 3.0e-40 169.5 241 45.6
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 4.0e-40 169.1 228 47.4
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 4.0e-40 169.1 237 45.6
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.3e-39 166.0 241 49.4
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.4e-39 165.6 241 45.6
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 2.2e-38 163.3 234 49.1
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 2.8e-38 162.9 240 45.4
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 3.7e-38 162.5 252 50.8
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 3.7e-38 162.5 247 47.8
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 4.8e-38 162.2 218 53.7
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 4.1e-37 159.1 234 48.3
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 1.2e-36 157.5 252 49.6
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 2.6e-36 156.4 216 44.9
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 7.7e-36 154.8 236 49.2
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 2.2e-35 153.3 240 43.8
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 2.2e-35 153.3 244 43.4
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.2e-35 153.3 226 46.0
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.2e-35 153.3 228 45.6
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 5.0e-35 152.1 232 44.0
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 6.5e-35 151.8 238 39.1
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 6.5e-35 151.8 239 37.7
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 1.1e-34 151.0 229 48.0
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 2.5e-34 149.8 227 43.2
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 4.2e-34 149.1 270 46.3
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 9.4e-34 147.9 258 43.8
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 3.6e-33 146.0 233 38.2
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.0e-32 144.4 241 43.6
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 5.2e-32 142.1 229 40.6
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 1.5e-31 140.6 235 37.9
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.6e-31 139.8 199 47.2
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.8e-30 136.3 204 48.0
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 6.3e-30 135.2 235 44.3
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.1e-29 134.4 222 40.5
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 5.4e-29 132.1 212 39.6
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 5.4e-29 132.1 232 41.4
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 5.4e-29 132.1 239 41.4
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 5.4e-29 132.1 228 39.9
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.0e-28 130.2 234 43.2
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 4.5e-28 129.0 223 37.2
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 4.5e-28 129.0 236 41.5
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 3.8e-27 125.9 233 44.2
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 3.8e-27 125.9 224 37.1
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.5e-26 124.0 222 41.4
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.9e-26 123.6 229 42.8
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 3.2e-26 122.9 237 40.9
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 5.5e-26 122.1 236 41.1
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.2e-25 120.9 223 38.6
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 1.6e-25 120.6 233 40.3
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 2.7e-25 119.8 232 41.4
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 8.0e-25 118.2 232 39.2
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 8.0e-25 118.2 219 40.6
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 8.0e-25 118.2 232 39.2
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 1.4e-24 117.5 207 41.5
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 1.4e-24 117.5 207 41.5
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.4e-24 117.5 268 37.3
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.4e-24 117.5 232 35.3
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 2.3e-24 116.7 218 40.4
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 2.3e-24 116.7 229 35.4
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 3.0e-24 116.3 236 38.1
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 3.0e-24 116.3 236 38.1
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 4.0e-24 115.9 236 38.1
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 6.8e-24 115.2 231 40.3
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 6.8e-24 115.2 231 40.3
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 6.8e-24 115.2 231 40.3
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.5e-23 114.0 240 37.1
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 7.5e-23 111.7 255 43.5
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 7.5e-23 111.7 207 37.7
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.2e-22 110.2 220 35.0
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.4e-21 106.7 233 36.5
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 4.1e-21 105.9 223 36.3
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 2.0e-20 103.6 233 33.9
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.0e-19 101.3 209 38.3
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.9e-18 97.1 221 35.3
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 3.3e-18 96.3 107 49.5
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 4.3e-18 95.9 207 36.2
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.6e-17 94.0 201 38.3
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 6.1e-17 92.0 156 41.7
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 2.3e-16 90.1 228 32.5
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 2.3e-16 90.1 106 43.4
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 5.2e-16 89.0 178 38.8
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 6.8e-16 88.6 109 45.0
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 8.9e-16 88.2 108 45.4
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 2.0e-15 87.0 154 42.9
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 6.4e-14 82.0 104 44.2
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 1.4e-13 80.9 190 32.1
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 3.9e-11 72.8 93 51.6
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 5.0e-11 72.4 233 29.2
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 2.1e-09 67.0 162 34.6
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 2.8e-09 66.6 90 43.3
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 8.0e-09 65.1 128 35.2
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 3.1e-08 63.2 204 35.3
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 4.4e-07 59.3 89 43.8
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.3e-06 57.8 58 55.2


User provided reference genes

Program Settings