Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 1.0e-176 623.2 309 100.0
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 2.4e-133 479.2 314 79.3
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 2.5e-130 469.2 323 73.7
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 3.3e-130 468.8 330 72.7
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 4.7e-129 464.9 318 73.9
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.4e-128 462.6 323 72.4
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 6.8e-128 461.1 320 73.1
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 6.8e-128 461.1 303 75.9
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 6.8e-128 461.1 323 72.1
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 8.9e-128 460.7 323 72.1
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 8.9e-128 460.7 324 71.9
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.0e-127 459.5 323 72.1
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 2.0e-127 459.5 325 72.9
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 3.4e-127 458.8 323 72.4
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 7.6e-127 457.6 311 74.3
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 7.6e-127 457.6 325 71.7
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 1.3e-126 456.8 310 75.2
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 1.3e-126 456.8 305 74.1
Nitab4.5_0002735g0030 Nicotiana tabacum HOM05D001237 ORTHO05D009110 1.7e-126 456.4 289 78.5
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 2.9e-126 455.7 319 71.5
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 2.9e-126 455.7 324 71.0
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 2.9e-126 455.7 325 71.7
Solyc08g075990.3 Solanum lycopersicum HOM05D001237 ORTHO05D009110 4.9e-126 454.9 310 74.8
CAN.G773.2 Capsicum annuum HOM05D001237 ORTHO05D009110 6.4e-126 454.5 308 74.4
CiPaw.12G070700 Carya illinoinensis HOM05D001237 ORTHO05D009110 1.9e-125 453.0 323 71.5
Cfa012569 Carpinus fangiana HOM05D001237 ORTHO05D009110 2.4e-125 452.6 275 79.3
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 4.2e-125 451.8 287 77.4
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 5.4e-125 451.4 328 71.0
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 7.1e-125 451.1 289 77.9
COL.COLO4_27340 Corchorus olitorius HOM05D001237 ORTHO05D009110 1.2e-124 450.3 282 77.7
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 1.2e-124 450.3 273 81.0
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 1.2e-124 450.3 309 72.8
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 2.1e-124 449.5 277 77.3
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 2.1e-124 449.5 293 75.8
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 2.7e-124 449.1 277 80.1
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 2.7e-124 449.1 322 71.7
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 2.3e-123 446.0 270 80.4
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 3.0e-123 445.7 271 80.8
Lalb_Chr05g0215521 Lupinus albus HOM05D001237 ORTHO05D009110 3.0e-123 445.7 308 71.4
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 8.7e-123 444.1 322 70.2
MELO3C013804.2 Cucumis melo HOM05D001237 ORTHO05D009110 1.9e-122 443.0 274 79.9
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 2.5e-122 442.6 312 71.5
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 4.3e-122 441.8 267 80.9
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 1.3e-121 440.3 267 79.0
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 1.6e-121 439.9 332 69.6
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 1.6e-121 439.9 288 75.0
DCAR_024946 Daucus carota HOM05D001577 ORTHO05D009110 3.6e-121 438.7 262 81.3
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 6.2e-121 438.0 259 83.0
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 1.5e-119 433.3 270 77.8
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 2.6e-119 432.6 272 77.9
CSS0010822 Camellia sinensis var. sinensis HOM05D001237 ORTHO05D009110 4.4e-119 431.8 328 68.9
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 1.3e-118 430.3 268 75.7
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 1.7e-118 429.9 317 68.5
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 2.2e-118 429.5 270 77.8
Migut.E01337 Erythranthe guttata HOM05D001237 ORTHO05D009110 2.9e-118 429.1 259 79.9
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 1.9e-117 426.4 292 73.6
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 2.7e-116 422.5 315 69.8
Dinv15842 Davidia involucrata HOM05D001237 ORTHO05D009110 2.7e-116 422.5 298 70.5
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 1.7e-115 419.9 258 79.8
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 2.3e-115 419.5 315 67.6
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 2.3e-115 419.5 271 76.0
Lsat_1_v5_gn_6_17621 Lactuca sativa HOM05D001237 ORTHO05D009110 2.3e-115 419.5 319 68.0
Glyma.01G147700 Glycine max HOM05D001237 ORTHO05D009110 5.1e-115 418.3 325 67.7
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 1.9e-114 416.4 317 68.8
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 3.3e-114 415.6 271 75.6
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 5.6e-114 414.8 315 67.9
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 5.6e-114 414.8 271 74.5
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 7.3e-114 414.5 271 74.2
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 7.3e-114 414.5 315 67.0
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 1.6e-113 413.3 246 80.9
Peaxi162Scf00408g00416 Petunia axillaris HOM05D001237 ORTHO05D009110 1.2e-111 407.1 275 76.4
Aa31LG9G15560 Aethionema arabicum HOM05D001237 ORTHO05D009110 2.6e-111 406.0 322 66.1
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 5.8e-111 404.8 256 78.5
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 1.1e-109 400.6 261 73.6
Sabra03G0068500 Salix brachista HOM05D001237 ORTHO05D009110 2.7e-108 396.0 331 66.5
CDE02G0540 Ceratophyllum demersum HOM05D001237 ORTHO05D009110 1.1e-104 384.0 309 64.7
Glyma.20G094800 Glycine max HOM05D001237 ORTHO05D009110 1.8e-104 383.3 226 82.3
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 1.4e-101 373.6 271 69.7
HanXRQChr08g0226791 Helianthus annuus HOM05D001237 ORTHO05D009110 6.0e-100 368.2 227 80.2
ClCG10G001120 Citrullus lanatus HOM05D001237 ORTHO05D009110 2.3e-99 366.3 263 71.1
SGA_v2.0_scaffold111G31373 Striga asiatica HOM05D001237 ORTHO05D009110 3.4e-95 352.4 203 83.7
CARHR182950 Cardamine hirsuta HOM05D001237 ORTHO05D009110 1.0e-94 350.9 213 78.4
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 3.8e-94 349.0 258 64.3
unitig_747.g21357 Utricularia gibba HOM05D000467 ORTHO05D000379 1.9e-93 346.7 234 73.5
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 6.9e-88 328.2 277 57.0
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 1.8e-83 313.5 250 58.0
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 5.0e-78 295.4 243 58.0
CBR_g18855 Chara braunii HOM05D001237 ORTHO05D009110 5.5e-77 292.0 234 61.5
arahy.Tifrunner.gnm1.ann1.3EKV6C Arachis hypogaea HOM05D001237 ORTHO05D009110 4.1e-72 275.8 241 62.7
arahy.Tifrunner.gnm1.ann1.YIEM7C Arachis hypogaea HOM05D001237 ORTHO05D009110 4.1e-72 275.8 241 62.7
QL12p001026 Quercus lobata HOM05D001237 ORTHO05D009110 1.6e-68 263.8 210 63.3
Glyma.09G212000 Glycine max HOM05D001237 ORTHO05D009110 9.7e-66 254.6 178 71.9
Hund11115 Selenicereus undatus HOM05D001237 ORTHO05D009110 4.5e-63 245.7 151 80.8
SEGI_12758 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 2.0e-55 220.3 135 74.8
RcHm_v2.0_Chr7g0213121 Rosa chinensis HOM05D001237 ORTHO05D009110 8.5e-54 214.9 250 50.8
Cre04.g212500 Chlamydomonas reinhardtii HOM05D001237 ORTHO05D009110 9.8e-50 201.4 281 41.6
PRCOL_00004822 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 3.3e-45 186.4 270 41.1
HPP92_025933 Vanilla planifolia HOM05D001237 ORTHO05D009110 2.6e-42 176.8 125 70.4
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 2.9e-41 173.3 276 35.9
Lju2073A0T61 Lonicera japonica HOM05D001237 ORTHO05D009110 3.7e-41 172.9 112 75.9
Sopen09g023280 Solanum pennellii HOM05D001237 ORTHO05D009110 3.3e-37 159.8 98 76.5
Gohir.D08G172350 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.3e-33 147.9 79 82.3
SalBow1G6490 Salvia bowleyana HOM05D001237 ORTHO05D009110 8.1e-28 128.6 127 56.7
MCO12G167 Micromonas commoda HOM05D001237 ORTHO05D009110 2.4e-24 117.1 303 27.7
FAN04G3094 Fragaria x ananassa HOM05D001237 ORTHO05D009110 7.1e-24 115.5 128 51.6
PRCOL_00006184 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 1.0e-22 111.7 270 29.3
SEGI_16157 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 5.6e-21 105.9 79 63.3
Gohir.D08G172400 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.6e-20 104.4 95 60.0
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 1.8e-11 74.3 280 26.4
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.2e-10 71.6 342 26.6
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 3.4e-10 70.1 280 24.6
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 4.4e-10 69.7 343 24.8
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 9.9e-10 68.6 345 25.8
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 1.3e-09 68.2 284 25.7
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 1.3e-09 68.2 284 25.7
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 1.3e-09 68.2 284 25.7
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 1.3e-09 68.2 284 25.7
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.3e-09 68.2 284 25.0
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.3e-09 68.2 343 26.2
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 1.3e-09 68.2 341 26.1
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 1.3e-09 68.2 292 28.1
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 1.7e-09 67.8 343 24.5
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.7e-09 67.8 358 26.0
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 1.7e-09 67.8 285 26.0
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 2.2e-09 67.4 284 26.1
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 2.2e-09 67.4 363 24.0
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 2.2e-09 67.4 282 26.6
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 2.2e-09 67.4 284 26.1
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 2.9e-09 67.0 280 28.6
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 2.9e-09 67.0 296 25.7
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 3.8e-09 66.6 363 24.2
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 4.9e-09 66.2 284 26.4
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 4.9e-09 66.2 284 25.4
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 4.9e-09 66.2 350 24.9
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 6.4e-09 65.9 267 27.7
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 6.4e-09 65.9 292 25.7
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 8.4e-09 65.5 284 26.8
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 8.4e-09 65.5 284 25.7
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 8.4e-09 65.5 284 26.1
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 8.4e-09 65.5 284 26.1
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 1.1e-08 65.1 284 26.1
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 1.4e-08 64.7 285 24.9
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 1.9e-08 64.3 284 25.7
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 1.9e-08 64.3 285 25.3
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 2.4e-08 63.9 350 24.6
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 3.2e-08 63.5 280 25.4
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 3.2e-08 63.5 346 24.3
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 3.2e-08 63.5 342 23.4
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 4.2e-08 63.2 298 25.5
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 4.2e-08 63.2 298 25.2
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 4.2e-08 63.2 285 24.6
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 4.2e-08 63.2 286 26.9
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 4.2e-08 63.2 285 25.3
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 5.4e-08 62.8 338 25.4
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 5.4e-08 62.8 285 24.9
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 7.1e-08 62.4 281 26.0
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 7.1e-08 62.4 284 23.9
vmacro14221 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 7.1e-08 62.4 45 71.1
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 9.3e-08 62.0 280 25.0
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 1.2e-07 61.6 282 25.9
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 1.2e-07 61.6 295 25.4
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 1.6e-07 61.2 285 25.3
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 1.6e-07 61.2 303 26.4
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 2.1e-07 60.8 279 26.5
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 3.5e-07 60.1 284 26.1
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 4.6e-07 59.7 286 26.6
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 6.0e-07 59.3 256 22.7
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 7.8e-07 58.9 228 25.4
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 1.3e-06 58.2 239 25.1
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 1.3e-06 58.2 293 23.2
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 1.3e-06 58.2 298 23.8
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 2.3e-06 57.4 240 25.8
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 2.3e-06 57.4 317 24.9
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 8.7e-06 55.5 285 23.9
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 8.7e-06 55.5 230 25.7


User provided reference genes

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