Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G003400 Manihot esculenta HOM05D007238 ORTHO05D009206 2.3e-269 931.8 515 100.0
Potri.001G130800 Populus trichocarpa HOM05D007238 ORTHO05D009206 1.3e-192 676.8 499 76.0
Potri.003G103100 Populus trichocarpa HOM05D007238 ORTHO05D009206 4.4e-188 661.8 531 75.7
Thecc.03G317700 Theobroma cacao HOM05D007238 ORTHO05D009206 8.3e-187 657.5 499 74.3
Atru.chr6.1480 Acer truncatum HOM05D007238 ORTHO05D009206 3.5e-185 652.1 491 72.9
Dinv22874 Davidia involucrata HOM05D007238 ORTHO05D009206 1.9e-183 646.4 530 74.0
GSVIVG01022787001 Vitis vinifera HOM05D007238 ORTHO05D009206 1.6e-182 643.3 530 72.6
Dinv28012 Davidia involucrata HOM05D007238 ORTHO05D009206 1.3e-179 633.6 530 71.9
Ciclev10000885m.g Citrus clementina HOM05D007238 ORTHO05D009206 2.4e-178 629.4 530 72.3
Sabra03G0070300 Salix brachista HOM05D007238 ORTHO05D009206 4.7e-174 615.1 525 68.2
Gohir.D12G205200 Gossypium hirsutum HOM05D007238 ORTHO05D009206 2.3e-173 612.8 500 69.8
TWI36G0279 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 3.2e-170 602.4 529 69.9
CiPaw.12G071800 Carya illinoinensis HOM05D007238 ORTHO05D009206 2.7e-169 599.4 493 68.6
Gohir.A12G202500 Gossypium hirsutum HOM05D007238 ORTHO05D009206 7.8e-169 597.8 500 68.6
Gorai.008G220100 Gossypium raimondii HOM05D007238 ORTHO05D009206 2.5e-167 592.8 500 68.2
CSS0038403 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 6.2e-166 588.2 530 69.1
RcHm_v2.0_Chr7g0213421 Rosa chinensis HOM05D007238 ORTHO05D009206 2.6e-164 582.8 501 67.9
Duzib205G0751 Durio zibethinus HOM05D007238 ORTHO05D009206 9.2e-162 574.3 551 61.7
Actinidia01264 Actinidia chinensis HOM05D007238 ORTHO05D009206 8.7e-160 567.8 500 65.8
FAN13G1136 Fragaria x ananassa HOM05D007238 ORTHO05D009206 4.3e-159 565.5 501 66.3
FvH4_5g23980 Fragaria vesca HOM05D007238 ORTHO05D009206 5.6e-159 565.1 501 65.9
CANSAT21G2527 Cannabis sativa HOM05D007238 ORTHO05D009206 3.1e-157 559.3 493 64.9
TWI56G0348 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 1.1e-154 550.8 493 65.5
TAR629G0677 Trochodendron aralioides HOM05D007238 ORTHO05D009206 1.2e-153 547.4 496 63.9
Eucgr.D02592 Eucalyptus grandis HOM05D007238 ORTHO05D009206 1.6e-153 547.0 500 64.4
Cc08_g05060 Coffea canephora HOM05D007238 ORTHO05D009206 1.9e-151 540.0 500 61.8
Aqoxy3G02024 Aquilegia oxysepala HOM05D007238 ORTHO05D009206 5.6e-151 538.5 530 64.3
Lj8C334G11 Lonicera japonica HOM05D007238 ORTHO05D009206 7.3e-151 538.1 553 63.3
FAN18G0294 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.6e-150 537.0 561 58.8
MD00G1002000 Malus domestica HOM05D007238 ORTHO05D009206 2.1e-150 536.6 502 66.3
FAN18G2161 Fragaria x ananassa HOM05D007238 ORTHO05D009206 4.8e-150 535.4 562 58.9
Cfa012591 Carpinus fangiana HOM05D007238 ORTHO05D009206 6.2e-150 535.0 433 70.0
FAN08G1858 Fragaria x ananassa HOM05D007238 ORTHO05D009206 6.2e-150 535.0 561 58.8
Oeu046801.1 Olea europaea HOM05D007238 ORTHO05D009206 6.4e-147 525.0 505 60.2
Haze_08066 Corylus avellana HOM05D007238 ORTHO05D009206 8.7e-144 514.6 577 56.0
Sed0015204 Sechium edule HOM05D007238 ORTHO05D009206 4.0e-141 505.8 499 60.7
MD06G1015600 Malus domestica HOM05D007238 ORTHO05D009206 2.9e-139 499.6 500 63.0
CsaV3_3G001050 Cucumis sativus L. HOM05D007238 ORTHO05D009206 5.5e-138 495.4 468 62.4
Solyc08g075760.3 Solanum lycopersicum HOM05D007238 ORTHO05D009206 2.7e-137 493.0 501 57.7
Actinidia32774 Actinidia chinensis HOM05D007238 ORTHO05D009206 7.9e-137 491.5 499 60.1
Sopen08g024410 Solanum pennellii HOM05D007238 ORTHO05D009206 7.9e-137 491.5 501 57.3
Nitab4.5_0002930g0030 Nicotiana tabacum HOM05D007238 ORTHO05D009206 3.9e-136 489.2 507 57.8
PGSC0003DMG400030852 Solanum tuberosum HOM05D007238 ORTHO05D009206 9.0e-133 478.0 507 56.4
Lj2g0008424 Lotus japonicus HOM05D007238 ORTHO05D009206 1.5e-132 477.2 500 58.2
Nitab4.5_0000030g0130 Nicotiana tabacum HOM05D007238 ORTHO05D009206 5.8e-132 475.3 510 57.5
CAN.G1363.6 Capsicum annuum HOM05D007238 ORTHO05D009206 2.2e-131 473.4 505 56.0
PGR031G3591 Punica granatum HOM05D007238 ORTHO05D009206 9.3e-130 468.0 433 63.0
Lsat_1_v5_gn_3_92801 Lactuca sativa HOM05D007238 ORTHO05D009206 8.7e-128 461.5 499 56.9
ECA233G5138 Erigeron canadensis HOM05D007238 ORTHO05D009206 2.5e-127 459.9 502 55.8
Medtr5g026850 Medicago truncatula HOM05D007238 ORTHO05D009206 5.7e-127 458.8 508 56.9
Glyma.01G149500 Glycine max HOM05D007238 ORTHO05D009206 4.8e-126 455.7 503 57.5
VMungo1215G3455 Vigna mungo HOM05D007238 ORTHO05D009206 8.2e-126 454.9 502 57.0
PSO063G0400 Papaver somniferum HOM05D007238 ORTHO05D009206 1.1e-125 454.5 508 58.1
HanXRQChr03g0081381 Helianthus annuus HOM05D007238 ORTHO05D009206 1.8e-125 453.8 498 56.2
arahy.Tifrunner.gnm1.ann1.0046K4 Arachis hypogaea HOM05D007238 ORTHO05D009206 2.4e-125 453.4 503 55.9
arahy.Tifrunner.gnm1.ann1.BJTL8K Arachis hypogaea HOM05D007238 ORTHO05D009206 2.4e-125 453.4 503 55.9
Glyma.09G213700 Glycine max HOM05D007238 ORTHO05D009206 3.1e-125 453.0 503 56.3
DCAR_008182 Daucus carota HOM05D007238 ORTHO05D009206 1.2e-124 451.1 510 55.5
Lalb_Chr05g0215441 Lupinus albus HOM05D007238 ORTHO05D009206 1.2e-124 451.1 501 55.5
Phvul.002G128600 Phaseolus vulgaris HOM05D007238 ORTHO05D009206 1.2e-124 451.1 502 56.4
Prupe.5G020000 Prunus persica HOM05D007238 ORTHO05D009206 4.5e-124 449.1 446 61.4
Ca_25102_v3 Cicer arietinum L. HOM05D007238 ORTHO05D009206 1.7e-123 447.2 500 56.2
TPR.G17266 Trifolium pratense HOM05D007238 ORTHO05D009206 5.5e-122 442.2 501 55.5
ClCG10G001020 Citrullus lanatus HOM05D007238 ORTHO05D009206 8.2e-118 428.3 497 54.9
Rhsim11G0025000 Rhododendron simsii HOM05D007238 ORTHO05D009206 6.9e-117 425.2 458 57.6
DCAR_004239 Daucus carota HOM05D007238 ORTHO05D009206 8.5e-115 418.3 438 58.4
ATR0829G060 Amborella trichopoda HOM05D007238 ORTHO05D009206 1.9e-114 417.2 524 51.3
MELO3C013794.2 Cucumis melo HOM05D007238 ORTHO05D009206 4.4e-111 406.0 354 64.4
FAN04G0931 Fragaria x ananassa HOM05D007238 ORTHO05D009206 6.3e-110 402.1 426 58.0
Migut.E01348 Erythranthe guttata HOM05D007238 ORTHO05D009206 3.8e-107 392.9 514 54.5
Peaxi162Scf02295g00022 Petunia axillaris HOM05D007238 ORTHO05D009206 1.2e-100 371.3 498 48.4
Os06g0115600 Oryza sativa ssp. japonica HOM05D007238 ORTHO05D009206 1.5e-98 364.4 500 48.6
SalBow8G0140 Salvia bowleyana HOM05D007238 ORTHO05D009206 2.3e-96 357.1 406 55.2
Zm00001eb378870 Zea mays HOM05D007238 ORTHO05D009206 3.0e-96 356.7 496 48.0
PSO782G1267 Papaver somniferum HOM05D007238 ORTHO05D009206 4.8e-94 349.4 421 54.6
vmacro00062 Vaccinium macrocarpon HOM05D007238 ORTHO05D009206 3.1e-93 346.7 373 58.2
Zm00001eb269110 Zea mays HOM05D007238 ORTHO05D009206 3.5e-92 343.2 499 47.3
Cpa.g.sc90.44 Carica papaya HOM05D007238 ORTHO05D009206 6.5e-91 339.0 323 60.7
Psat2g142200 Pisum sativum HOM05D007238 ORTHO05D009206 3.5e-84 316.6 388 52.3
Hma1.2p1_1933F.1_g308070 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 8.9e-80 302.0 260 67.3
PSO782G4691 Papaver somniferum HOM05D007238 ORTHO05D009206 1.1e-56 225.3 322 48.4
HanXRQChr03g0081161 Helianthus annuus HOM05D007238 ORTHO05D009206 5.4e-45 186.4 308 43.5
HPP92_002457 Vanilla planifolia HOM05D000907 ORTHO05D000753 4.9e-38 163.3 255 44.3
SEGI_10751 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 5.4e-37 159.8 324 37.7
SEGI_26764 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 6.9e-32 142.9 167 51.5
HanXRQChr17g0554671 Helianthus annuus HOM05D007238 ORTHO05D009206 1.6e-25 121.7 158 51.3
Duzib068G0324 Durio zibethinus HOM05D007238 ORTHO05D009206 4.8e-25 120.2 79 81.0
HPP92_022728 Vanilla planifolia HOM05D007238 ORTHO05D009206 8.1e-25 119.4 211 40.8
SEGI_32460 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 2.4e-24 117.9 76 81.6
Pp3c23_22500 Physcomitrium patens HOM05D007238 ORTHO05D009206 2.6e-23 114.4 538 29.2
HPP92_025938 Vanilla planifolia HOM05D007238 ORTHO05D009206 2.9e-22 110.9 71 81.7
CSS0023317 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 4.3e-18 97.1 53 92.5
arahy.Tifrunner.gnm1.ann1.DKTU9V Arachis hypogaea HOM05D007238 ORTHO05D009206 3.7e-17 94.0 290 31.4
AagrBONN_evm.TU.Sc2ySwM_228.587 Anthoceros agrestis HOM05D007238 ORTHO05D009206 2.4e-16 91.3 674 26.1
Cpa.g.sc90.43 Carica papaya HOM05D007238 ORTHO05D009206 1.9e-13 81.6 64 70.3
Actinidia14160 Actinidia chinensis HOM05D007238 ORTHO05D009206 2.1e-12 78.2 44 86.4
Hma1.2p1_0544F.1_g175540 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 7.9e-12 76.3 66 65.2
HanXRQChr03g0081141 Helianthus annuus HOM05D007238 ORTHO05D009206 1.8e-11 75.1 60 65.0
HanXRQChr09g0247011 Helianthus annuus HOM05D007238 ORTHO05D009206 6.7e-11 73.2 39 92.3
arahy.Tifrunner.gnm1.ann1.HBQ3NA Arachis hypogaea HOM05D007238 ORTHO05D009206 1.1e-08 65.9 60 60.0
arahy.Tifrunner.gnm1.ann1.M9N5E0 Arachis hypogaea HOM05D007238 ORTHO05D009206 1.1e-08 65.9 60 60.0
FvH4_5g27460 Fragaria vesca HOM05D007238 ORTHO05D009206 5.9e-07 60.1 48 66.7
HanXRQChr03g0081151 Helianthus annuus HOM05D007238 ORTHO05D009206 1.0e-06 59.3 53 58.5
FvH4_5g29470 Fragaria vesca HOM05D007238 ORTHO05D009206 3.8e-06 57.4 93 43.0


User provided reference genes

Program Settings