Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 0.0e+00 1372.8 713 100.0
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 3.5e-268 928.3 704 66.3
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 8.9e-264 913.7 642 70.6
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 2.0e-263 912.5 712 67.1
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 1.9e-261 906.0 710 66.2
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 4.6e-260 901.4 712 63.8
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 3.0e-259 898.7 738 62.3
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 3.9e-259 898.3 717 65.1
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 2.6e-255 885.6 702 63.0
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 6.4e-254 880.9 711 62.3
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 1.0e-251 873.6 712 64.2
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 3.0e-251 872.1 703 63.9
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 7.3e-250 867.5 640 66.1
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 7.3e-250 867.5 719 62.2
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 2.8e-249 865.5 716 64.7
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.6e-247 859.0 704 62.4
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 4.4e-247 858.2 712 61.2
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 2.2e-246 855.9 611 67.8
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 2.4e-245 852.4 627 66.8
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 2.4e-245 852.4 627 66.8
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.4e-245 851.3 706 60.3
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 1.2e-244 850.1 703 65.1
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 1.1e-242 843.6 632 65.2
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.1e-241 839.3 705 63.3
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 6.9e-240 834.3 720 61.9
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 4.9e-238 828.2 698 62.5
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 7.1e-237 824.3 706 61.8
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 2.7e-236 822.4 659 62.5
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 8.7e-235 817.4 596 65.4
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 4.0e-232 808.5 720 58.8
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 9.0e-232 807.4 732 60.0
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 3.4e-231 805.4 727 56.9
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 1.4e-229 800.0 594 64.8
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 4.2e-229 798.5 575 66.8
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 7.1e-229 797.7 721 58.9
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 2.1e-228 796.2 695 58.6
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 2.1e-228 796.2 701 57.6
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 2.1e-228 796.2 596 63.9
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 3.5e-228 795.4 722 58.3
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 1.1e-226 790.4 715 58.6
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 5.6e-226 788.1 721 58.1
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 7.4e-226 787.7 599 63.1
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 9.6e-226 787.3 705 58.2
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 6.2e-225 784.6 643 63.0
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 4.0e-224 781.9 714 58.3
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 2.6e-223 779.2 714 57.1
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 5.8e-223 778.1 703 57.3
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 1.7e-222 776.5 700 58.3
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 2.9e-222 775.8 545 67.5
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 4.9e-222 775.0 645 60.9
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 1.4e-221 773.5 645 60.5
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 2.5e-221 772.7 595 62.4
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 7.1e-221 771.2 646 61.3
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 3.5e-220 768.8 703 56.3
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 3.5e-220 768.8 697 57.7
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 6.0e-220 768.1 782 55.9
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 3.0e-219 765.8 571 64.6
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 3.3e-218 762.3 735 53.9
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 5.7e-218 761.5 643 61.7
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 8.2e-217 757.7 709 56.7
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 1.3e-214 750.4 687 59.1
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 8.5e-214 747.7 646 59.6
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 1.6e-212 743.4 708 56.6
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.5e-210 736.9 761 55.7
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 1.6e-209 733.4 884 47.6
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 6.9e-208 728.0 707 56.2
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 2.6e-207 726.1 643 56.6
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 3.4e-207 725.7 576 61.6
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 1.6e-204 716.8 647 58.6
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 1.6e-204 716.8 993 43.8
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 1.8e-203 713.4 645 58.1
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 3.0e-203 712.6 684 53.9
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 1.5e-199 700.3 637 55.9
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 8.5e-198 694.5 732 54.5
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 8.5e-198 694.5 641 56.5
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 2.5e-197 693.0 767 51.9
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 1.6e-196 690.3 544 62.3
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.1e-194 684.1 681 53.2
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 4.1e-192 675.6 600 55.8
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.7e-188 662.9 613 54.8
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 6.1e-180 635.2 650 53.4
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 6.1e-180 635.2 699 48.4
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 7.5e-178 628.2 621 53.8
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 1.4e-176 624.0 723 48.1
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 9.1e-176 621.3 634 52.7
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 8.5e-174 614.8 611 50.2
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 1.9e-173 613.6 698 49.1
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 7.2e-173 611.7 623 50.4
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.2e-167 594.3 700 46.6
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 3.4e-162 576.2 642 47.7
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 1.3e-161 574.3 541 56.2
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 6.4e-161 572.0 674 44.7
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.0e-154 550.4 640 46.4
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 2.6e-154 550.1 593 49.7
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 1.3e-153 547.7 583 49.2
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 5.0e-150 535.8 378 68.8
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.1e-149 534.6 393 66.4
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 1.2e-140 504.6 404 62.4
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 9.9e-138 495.0 489 53.8
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 4.1e-136 489.6 659 40.8
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 7.1e-128 462.2 557 45.6
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 5.3e-123 446.0 639 42.1
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 3.4e-122 443.4 401 62.8
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 2.8e-116 423.7 343 61.5
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.4e-115 421.4 327 63.9
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 5.8e-114 416.0 291 66.7
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 4.2e-112 409.8 313 63.6
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.9e-109 401.0 496 48.2
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.1e-107 395.2 333 57.1
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.7e-103 380.6 498 43.0
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 1.8e-102 377.9 437 43.9
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 1.1e-99 368.6 510 44.1
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 1.6e-95 354.8 523 39.4
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.0e-94 352.1 455 45.3
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 6.9e-91 339.3 353 51.3
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 2.8e-84 317.4 324 53.1
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 4.5e-82 310.1 303 55.4
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 3.8e-81 307.0 494 36.4
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 5.0e-73 280.0 535 32.1
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 1.9e-64 251.5 335 47.2
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 7.2e-64 249.6 207 60.4
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 1.4e-62 245.4 304 47.0
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.6e-61 241.1 154 73.4
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 1.3e-60 238.8 156 71.8
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.9e-57 227.6 210 52.4
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 2.5e-56 224.6 201 59.2
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 5.5e-56 223.4 147 68.0
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 1.0e-54 219.2 287 43.2
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 8.3e-52 209.5 135 71.9
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 2.0e-50 204.9 149 63.8
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 2.9e-49 201.1 266 46.2
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 6.6e-49 199.9 286 43.7
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 8.6e-49 199.5 193 50.3
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 5.6e-48 196.8 240 46.7
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 9.2e-43 179.5 346 34.7
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 1.1e-40 172.6 342 36.8
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 6.2e-39 166.8 289 39.4
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 9.2e-35 152.9 219 43.4
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.7e-34 151.4 92 75.0
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 7.8e-34 149.8 116 62.9
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 5.0e-33 147.1 84 82.1
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 4.7e-31 140.6 219 41.1
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 3.2e-27 127.9 83 71.1
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.3e-25 122.5 89 64.0
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.7e-25 122.1 85 68.2
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 8.1e-23 113.2 70 75.7
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.8e-22 112.1 117 52.1
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.4e-22 111.7 99 56.6
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 4.0e-22 110.9 105 57.1
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 5.8e-21 107.1 70 75.7
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.9e-17 94.4 90 53.3
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.2e-12 78.6 81 48.1
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.4e-11 73.9 55 61.8
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 3.1e-06 58.2 99 37.4
Rhsim03G0091700 Rhododendron simsii HOM05D000751 ORTHO05D340051 4.0e-06 57.8 44 61.4


User provided reference genes

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