Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 1.4e-51 207.2 250 100.0
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 3.4e-45 186.0 250 91.2
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 9.4e-43 177.9 252 86.1
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 4.8e-39 165.6 235 88.9
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 1.7e-36 157.1 258 79.1
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 5.0e-36 155.6 258 81.8
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 1.1e-35 154.5 261 80.8
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.4e-35 154.1 252 88.5
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 4.2e-35 152.5 264 80.3
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 7.2e-35 151.8 261 80.8
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 2.1e-34 150.2 262 80.5
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 2.7e-34 149.8 262 80.5
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.0e-33 147.9 256 81.6
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.0e-33 147.9 256 81.6
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 1.0e-33 147.9 262 79.8
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 8.8e-33 144.8 267 77.5
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 1.5e-32 144.1 262 79.4
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 3.3e-32 142.9 236 86.4
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 3.3e-32 142.9 266 77.8
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 4.4e-32 142.5 255 80.8
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 5.7e-32 142.1 257 81.3
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 7.4e-32 141.7 251 83.7
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 7.4e-32 141.7 260 80.8
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 1.7e-31 140.6 267 68.9
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 1.7e-31 140.6 258 80.2
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 2.8e-31 139.8 261 79.7
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 8.2e-31 138.3 262 78.6
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 1.1e-30 137.9 263 79.1
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 1.8e-30 137.1 264 76.9
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.4e-30 136.7 263 77.9
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 2.4e-30 136.7 255 84.3
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.1e-30 136.0 256 81.6
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 7.0e-30 135.2 258 77.1
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 7.0e-30 135.2 264 75.0
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 7.0e-30 135.2 251 82.1
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.6e-29 133.3 256 80.5
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 5.0e-28 129.0 263 76.8
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 8.5e-28 128.3 261 80.5
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 1.1e-27 127.9 262 80.2
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 1.5e-27 127.5 263 79.8
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 1.9e-27 127.1 255 78.4
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 3.2e-27 126.3 250 84.8
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 4.2e-27 125.9 255 79.2
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 4.2e-27 125.9 234 85.5
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 4.2e-27 125.9 234 85.5
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 2.1e-26 123.6 257 81.7
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 3.6e-26 122.9 253 77.9
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 3.6e-26 122.9 260 82.7
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 4.7e-26 122.5 250 75.6
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 2.3e-25 120.2 234 84.2
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 3.0e-25 119.8 263 67.7
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 3.0e-25 119.8 259 81.9
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 1.5e-24 117.5 273 72.5
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 2.0e-24 117.1 252 76.2
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 3.3e-24 116.3 251 79.7
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 5.7e-24 115.5 240 81.2
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 9.7e-24 114.8 234 83.3
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.7e-23 112.8 267 76.8
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 6.3e-23 112.1 262 70.6
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 8.2e-23 111.7 262 78.6
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.1e-22 111.3 266 77.1
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.1e-22 109.8 263 77.9
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 9.1e-22 108.2 234 72.2
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.2e-21 107.8 247 78.1
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 3.5e-21 106.3 247 72.5
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 5.0e-20 102.4 262 77.1
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 8.5e-20 101.7 214 85.0
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 4.2e-19 99.4 229 81.7
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.2e-18 97.8 260 74.6
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.2e-18 97.8 245 73.1
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.6e-18 97.4 260 68.5
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 3.6e-18 96.3 242 76.0
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 6.1e-18 95.5 259 73.0
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 1.0e-17 94.7 67 83.6
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 2.3e-17 93.6 51 84.3
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 3.0e-17 93.2 67 82.1
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 4.0e-17 92.8 251 74.9
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 5.2e-17 92.4 67 71.6
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 8.8e-17 91.7 150 80.7
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 1.5e-16 90.9 259 73.0
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 2.0e-16 90.5 216 77.8
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 3.4e-16 89.7 50 80.0
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 9.8e-16 88.2 134 85.8
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 1.3e-15 87.8 235 76.2
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.2e-15 87.0 66 71.2
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 2.8e-15 86.7 209 85.2
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 3.7e-15 86.3 240 77.9
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 3.7e-15 86.3 252 73.8
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 3.7e-15 86.3 236 73.7
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.1e-14 84.7 244 74.6
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 4.1e-14 82.8 240 75.8
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 9.1e-14 81.6 51 70.6
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 9.1e-14 81.6 67 73.1
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 1.2e-13 81.3 240 75.4
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.7e-13 80.1 265 58.1
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 4.5e-13 79.3 51 74.5
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 4.5e-13 79.3 254 61.0
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 7.7e-13 78.6 67 67.2
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 1.3e-12 77.8 208 82.2
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 1.3e-12 77.8 51 68.6
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.7e-12 77.4 50 68.0
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 2.3e-12 77.0 49 67.3
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 2.3e-12 77.0 52 67.3
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 2.3e-12 77.0 52 67.3
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 2.3e-12 77.0 49 67.3
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 5.0e-12 75.9 234 67.5
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 5.0e-12 75.9 48 70.8
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.1e-11 74.7 44 75.0
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 3.2e-11 73.2 47 72.3
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 7.2e-11 72.0 47 70.2
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 9.5e-11 71.6 51 64.7
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 9.5e-11 71.6 50 62.0
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 9.5e-11 71.6 50 62.0
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 2.8e-10 70.1 68 58.8
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 3.6e-10 69.7 250 68.4
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 4.7e-10 69.3 51 60.8
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 6.1e-10 68.9 51 62.7
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 8.0e-10 68.6 51 62.7
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 5.2e-09 65.9 51 62.7
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 8.8e-09 65.1 58 55.2
AUR62010398 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.5e-08 64.3 107 93.5
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 3.4e-08 63.2 48 64.6
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 3.4e-08 63.2 48 62.5
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 3.4e-08 63.2 48 62.5
AUR62016820 Chenopodium quinoa HOM05D004463 ORTHO05D004724 4.4e-08 62.8 106 93.4
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 4.4e-08 62.8 51 58.8
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 4.4e-08 62.8 52 61.5
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 5.7e-08 62.4 51 58.8
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 7.5e-08 62.0 43 62.8
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 1.3e-07 61.2 51 58.8
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 1.7e-07 60.8 51 60.8
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 1.7e-07 60.8 42 71.4
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 2.8e-07 60.1 51 56.9
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 2.8e-07 60.1 51 56.9
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 3.7e-07 59.7 42 64.3
ATR0998G002 Amborella trichopoda HOM05D004463 ORTHO05D004724 4.9e-07 59.3 209 80.9
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 4.9e-07 59.3 46 54.3
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 6.3e-07 58.9 93 38.7
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 6.3e-07 58.9 48 58.3
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 6.3e-07 58.9 51 56.9
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 8.3e-07 58.5 51 54.9
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 1.4e-06 57.8 51 56.9
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 1.4e-06 57.8 51 56.9
Nn5g29212 Nelumbo nucifera HOM05D004463 ORTHO05D004724 1.8e-06 57.4 132 72.0
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 2.4e-06 57.0 51 54.9
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 2.4e-06 57.0 34 76.5
EL10Ac7g16555 Beta vulgaris HOM05D031029 ORTHO05D004724 3.1e-06 56.6 42 64.3
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 3.1e-06 56.6 42 59.5
Ah.08g211810 Amaranthus hybridus HOM05D031029 ORTHO05D004724 4.1e-06 56.2 42 66.7
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 4.1e-06 56.2 43 60.5
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 7.0e-06 55.5 50 52.0
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 9.2e-06 55.1 42 57.1


User provided reference genes

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