Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 1.7e-235 819.3 519 100.0
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 3.0e-152 542.7 398 72.4
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 3.0e-152 542.7 398 72.4
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 4.8e-150 535.4 317 85.2
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 6.3e-150 535.0 355 78.9
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 1.4e-149 533.9 347 80.7
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 3.1e-149 532.7 347 80.7
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 6.9e-149 531.6 347 80.7
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 9.0e-149 531.2 352 78.7
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 1.5e-148 530.4 356 78.9
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 2.6e-148 529.6 388 73.7
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 3.4e-148 529.3 330 80.0
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 3.6e-145 519.2 405 71.1
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 1.4e-144 517.3 319 81.2
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 3.0e-144 516.2 356 75.6
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 2.5e-143 513.1 320 79.1
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 4.3e-143 512.3 416 68.0
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 7.4e-143 511.5 319 80.9
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 1.3e-142 510.8 375 71.2
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 2.2e-142 510.0 321 80.4
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 3.7e-142 509.2 369 72.6
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 3.7e-142 509.2 395 70.6
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 8.2e-142 508.1 406 66.7
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 2.6e-140 503.1 334 78.7
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 1.0e-139 501.1 314 79.6
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 1.0e-139 501.1 318 82.4
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 1.3e-139 500.7 318 82.1
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 3.8e-139 499.2 372 71.2
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 1.1e-138 497.7 402 66.7
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 1.1e-138 497.7 430 64.7
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 2.5e-138 496.5 362 72.1
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 7.2e-138 495.0 355 75.8
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 6.1e-137 491.9 317 80.4
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 1.0e-136 491.1 318 78.0
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 1.8e-136 490.3 312 78.2
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 2.3e-136 490.0 317 78.2
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 3.9e-136 489.2 408 68.1
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 7.4e-135 485.0 397 68.5
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 1.7e-134 483.8 312 79.2
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 8.2e-134 481.5 404 66.3
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 8.2e-134 481.5 371 69.0
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 1.4e-133 480.7 347 74.4
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 3.1e-133 479.6 337 73.9
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 5.3e-133 478.8 403 66.5
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 9.1e-133 478.0 358 71.2
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 1.2e-132 477.6 322 76.4
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 4.5e-132 475.7 319 75.5
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 7.7e-132 474.9 317 77.0
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 7.7e-132 474.9 317 76.7
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 7.7e-132 474.9 375 69.1
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 1.7e-131 473.8 404 66.1
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 5.0e-131 472.2 331 72.5
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 5.0e-131 472.2 328 74.1
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 5.0e-131 472.2 314 75.5
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 5.0e-131 472.2 317 76.7
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 1.1e-130 471.1 374 68.7
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 1.5e-130 470.7 402 64.7
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 1.9e-130 470.3 413 64.2
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 5.5e-130 468.8 315 76.8
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 1.2e-129 467.6 421 63.9
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 3.6e-129 466.1 332 75.0
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 4.7e-129 465.7 465 60.4
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 6.1e-129 465.3 317 73.8
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 1.0e-128 464.5 320 75.0
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 1.0e-128 464.5 332 74.1
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 6.7e-128 461.8 317 73.8
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 1.1e-127 461.1 356 68.3
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 1.1e-127 461.1 311 76.8
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 3.3e-127 459.5 317 72.6
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 1.7e-126 457.2 320 74.1
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 1.7e-126 457.2 425 63.1
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 4.8e-126 455.7 337 70.6
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 8.2e-126 454.9 383 65.3
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 1.8e-125 453.8 387 64.3
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 9.1e-125 451.4 439 59.0
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 1.6e-124 450.7 439 58.5
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 2.0e-124 450.3 422 64.5
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.0e-123 448.0 397 62.2
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.3e-123 447.6 420 62.4
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 1.7e-123 447.2 364 65.7
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 7.2e-122 441.8 323 72.4
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 2.7e-121 439.9 318 71.4
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.0e-120 438.0 449 58.4
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 1.4e-120 437.6 318 70.8
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 5.4e-117 425.6 320 69.1
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 7.0e-117 425.2 319 69.3
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 1.7e-115 420.6 637 45.2
SGA_v2.0_scaffold144G35886 Striga asiatica HOM05D006577 ORTHO05D008428 3.8e-107 392.9 279 73.5
BcaC09g51430 Brassica carinata HOM05D006577 ORTHO05D008428 7.3e-106 388.7 265 74.3
Lj3A8G25 Lonicera japonica HOM05D006577 ORTHO05D008428 7.3e-106 388.7 260 77.3
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 1.5e-103 380.9 395 54.7
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 2.9e-102 376.7 287 67.2
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 5.0e-99 365.9 388 53.9
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 3.4e-95 353.2 244 75.8
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 2.1e-89 334.0 278 66.2
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 4.0e-88 329.7 289 58.8
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 6.6e-83 312.4 301 59.5
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 1.8e-72 277.7 314 53.5
Lj3A28G25 Lonicera japonica HOM05D006577 ORTHO05D008428 4.0e-72 276.6 191 74.9
Hund17694 Selenicereus undatus HOM05D006577 ORTHO05D008428 2.3e-67 260.8 187 73.8
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 4.0e-56 223.4 176 67.6
Lj9P453T24 Lonicera japonica HOM05D006577 ORTHO05D008428 1.5e-50 204.9 156 69.2
HanXRQChr07g0198421 Helianthus annuus HOM05D006577 ORTHO05D008428 2.8e-49 200.7 181 63.0
MCO15G109 Micromonas commoda HOM05D006577 ORTHO05D008428 2.8e-41 174.1 337 34.7
TPR.G30154 Trifolium pratense HOM05D006577 ORTHO05D008428 9.7e-34 149.1 196 50.0
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 2.3e-27 127.9 69 84.1
Zm00001eb395460 Zea mays HOM05D006577 ORTHO05D008428 3.0e-27 127.5 98 71.4
Os06g0708900 Oryza sativa ssp. japonica HOM05D006577 ORTHO05D008428 3.9e-27 127.1 94 71.3
Zm00001eb339160 Zea mays HOM05D006577 ORTHO05D008428 3.3e-26 124.0 74 82.4
VMungo0251G3731 Vigna mungo HOM05D006577 ORTHO05D008428 9.7e-26 122.5 90 75.6
MD15G1000700 Malus domestica HOM05D006577 ORTHO05D008428 3.1e-24 117.5 118 60.2
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 2.2e-17 94.7 77 66.2
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 5.3e-16 90.1 164 41.5
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 1.6e-15 88.6 166 42.2
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 2.6e-15 87.8 124 47.6
TPR.G13376 Trifolium pratense HOM05D006577 ORTHO05D008428 1.7e-14 85.1 67 67.2
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 2.9e-14 84.3 48 81.2
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 1.5e-13 82.0 164 40.9
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 2.5e-13 81.3 48 79.2
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 1.2e-12 79.0 39 92.3
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 3.6e-12 77.4 38 86.8
Cre06.g280700 Chlamydomonas reinhardtii HOM05D006577 ORTHO05D008428 8.0e-12 76.3 121 34.7


User provided reference genes

Program Settings