Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G136400 Manihot esculenta HOM05D006422 ORTHO05D007992 4.5e-130 468.0 248 100.0
Potri.006G276400 Populus trichocarpa HOM05D006422 ORTHO05D007992 9.1e-99 364.0 237 78.5
Sabra06G0214100 Salix brachista HOM05D006422 ORTHO05D007992 1.2e-95 353.6 237 76.8
Cfa013253 Carpinus fangiana HOM05D006422 ORTHO05D007992 4.9e-92 341.7 231 75.3
Ciclev10009324m.g Citrus clementina HOM05D006422 ORTHO05D007992 6.6e-89 331.3 213 77.9
Thecc.09G005200 Theobroma cacao HOM05D006422 ORTHO05D007992 3.6e-87 325.5 236 73.7
Duzib168G1765 Durio zibethinus HOM05D006422 ORTHO05D007992 2.3e-86 322.8 237 70.5
TWI34G0909 Tripterygium wilfordii HOM05D006422 ORTHO05D007992 5.2e-86 321.6 245 71.4
Dinv10868 Davidia involucrata HOM05D006422 ORTHO05D007992 8.9e-86 320.9 218 75.7
Dinv26550 Davidia involucrata HOM05D006422 ORTHO05D007992 8.9e-86 320.9 218 75.7
Atru.chr7.2615_Atru.chr7.2616 Acer truncatum HOM05D006422 ORTHO05D007992 9.8e-85 317.4 228 71.9
Prupe.1G462100 Prunus persica HOM05D006422 ORTHO05D007992 9.8e-85 317.4 237 67.9
COL.COLO4_18610 Corchorus olitorius HOM05D006422 ORTHO05D007992 2.2e-84 316.2 248 68.1
GSVIVG01035544001 Vitis vinifera HOM05D006422 ORTHO05D007992 2.2e-84 316.2 221 71.0
CiPaw.07G214400 Carya illinoinensis HOM05D006422 ORTHO05D007992 1.1e-83 313.9 191 80.6
TAR383G0184 Trochodendron aralioides HOM05D006422 ORTHO05D007992 1.4e-83 313.5 238 69.7
Eucgr.C02103 Eucalyptus grandis HOM05D006422 ORTHO05D007992 9.2e-83 310.8 194 77.8
QL12p024696 Quercus lobata HOM05D006422 ORTHO05D007992 9.2e-83 310.8 217 73.7
Phvul.001G058000 Phaseolus vulgaris HOM05D006422 ORTHO05D007992 1.6e-82 310.1 217 71.0
RcHm_v2.0_Chr6g0312201 Rosa chinensis HOM05D006422 ORTHO05D007992 3.5e-82 308.9 246 64.2
Nn1g01726 Nelumbo nucifera HOM05D006422 ORTHO05D007992 7.8e-82 307.8 234 70.9
MD15G1109900 Malus domestica HOM05D006422 ORTHO05D007992 1.0e-81 307.4 234 66.2
VMungo0647G2190 Vigna mungo HOM05D006422 ORTHO05D007992 1.0e-81 307.4 217 71.0
AUR62020627 Chenopodium quinoa HOM05D006422 ORTHO05D007992 3.0e-81 305.8 209 74.6
FvH4_2g30680 Fragaria vesca HOM05D006422 ORTHO05D007992 5.0e-81 305.1 246 63.8
FAN24G2382 Fragaria x ananassa HOM05D006422 ORTHO05D007992 1.1e-80 303.9 246 63.8
PGR042G1463 Punica granatum HOM05D006422 ORTHO05D007992 1.1e-80 303.9 236 68.6
Lj5g0012981 Lotus japonicus HOM05D006422 ORTHO05D007992 2.5e-80 302.8 221 70.6
Cc04_g09430 Coffea canephora HOM05D006422 ORTHO05D007992 3.3e-80 302.4 195 76.4
Solyc08g006160.4 Solanum lycopersicum HOM05D006422 ORTHO05D007992 1.2e-79 300.4 224 69.2
THA.LOC104811048 Tarenaya hassleriana HOM05D006422 ORTHO05D007992 2.1e-79 299.7 226 66.8
Migut.A00443 Erythranthe guttata HOM05D006422 ORTHO05D007992 3.6e-79 298.9 213 70.0
Thhalv10014537m.g Eutrema salsugineum HOM05D006422 ORTHO05D007992 4.7e-79 298.5 226 65.9
Aqoxy5G03915 Aquilegia oxysepala HOM05D006422 ORTHO05D007992 8.0e-79 297.7 221 70.1
Sopen08g002130 Solanum pennellii HOM05D006422 ORTHO05D007992 1.1e-78 297.4 225 66.7
CANSAT25G0758 Cannabis sativa HOM05D006422 ORTHO05D007992 1.4e-78 297.0 235 65.5
CAN.G1364.3 Capsicum annuum HOM05D006422 ORTHO05D007992 1.4e-78 297.0 222 67.1
MBI13_g31531_MAGBIO Magnolia biondii HOM05D006422 ORTHO05D007992 1.4e-78 297.0 175 81.7
Sp6g24440 Schrenkiella parvula HOM05D006422 ORTHO05D007992 1.4e-78 297.0 226 64.2
Ca_12880_v3 Cicer arietinum L. HOM05D006422 ORTHO05D007992 3.1e-78 295.8 189 75.1
Gohir.D06G108900 Gossypium hirsutum HOM05D006422 ORTHO05D007992 3.1e-78 295.8 189 76.7
Lalb_Chr14g0362181 Lupinus albus HOM05D006422 ORTHO05D007992 3.1e-78 295.8 188 76.6
PSO170G4757 Papaver somniferum HOM05D006422 ORTHO05D007992 5.2e-78 295.0 244 63.9
Gorai.010G123700 Gossypium raimondii HOM05D006422 ORTHO05D007992 6.8e-78 294.7 189 76.2
BcaB08g36552 Brassica carinata HOM05D006422 ORTHO05D007992 8.9e-78 294.3 225 64.9
Medtr1g009980 Medicago truncatula HOM05D006422 ORTHO05D007992 8.9e-78 294.3 209 70.3
MSTRG.11814 Avicennia marina HOM05D006422 ORTHO05D007992 1.2e-77 293.9 208 71.2
FAN27G3442 Fragaria x ananassa HOM05D006422 ORTHO05D007992 2.6e-77 292.7 247 62.8
Nitab4.5_0000025g0080 Nicotiana tabacum HOM05D006422 ORTHO05D007992 2.6e-77 292.7 251 63.7
Hma1.2p1_0534F.1_g173720 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 3.4e-77 292.4 245 63.3
PSO017G3510 Papaver somniferum HOM05D006422 ORTHO05D007992 3.4e-77 292.4 241 64.3
PGSC0003DMG400009533 Solanum tuberosum HOM05D006422 ORTHO05D007992 3.4e-77 292.4 211 70.6
TPR.G11997 Trifolium pratense HOM05D006422 ORTHO05D007992 3.4e-77 292.4 207 70.0
BcaC04g19400 Brassica carinata HOM05D006422 ORTHO05D007992 5.8e-77 291.6 213 65.7
C09p56110 Brassica napus HOM05D006422 ORTHO05D007992 5.8e-77 291.6 213 65.7
BolC9t58478H Brassica oleracea HOM05D006422 ORTHO05D007992 5.8e-77 291.6 213 65.7
Psat6g032000 Pisum sativum HOM05D006422 ORTHO05D007992 9.8e-77 290.8 185 75.7
Gohir.A06G106700 Gossypium hirsutum HOM05D006422 ORTHO05D007992 1.3e-76 290.4 193 75.6
CARHR192910 Cardamine hirsuta HOM05D006422 ORTHO05D007992 1.7e-76 290.0 226 61.9
C03p11290 Brassica napus HOM05D006422 ORTHO05D007992 2.9e-76 289.3 223 63.2
A03p09710 Brassica napus HOM05D006422 ORTHO05D007992 3.7e-76 288.9 223 63.7
BraA03t10287Z Brassica rapa HOM05D006422 ORTHO05D007992 3.7e-76 288.9 223 63.7
Peaxi162Scf00045g01530 Petunia axillaris HOM05D006422 ORTHO05D007992 3.7e-76 288.9 210 70.5
BcaB01g04822 Brassica carinata HOM05D006422 ORTHO05D007992 4.9e-76 288.5 221 63.3
Aa31LG9G9500 Aethionema arabicum HOM05D006422 ORTHO05D007992 8.3e-76 287.7 221 65.6
AT5G19940 Arabidopsis thaliana HOM05D006422 ORTHO05D007992 1.1e-75 287.3 225 62.7
arahy.Tifrunner.gnm1.ann1.43EIBT Arachis hypogaea HOM05D006422 ORTHO05D007992 1.1e-75 287.3 190 72.1
AL6G31470 Arabidopsis lyrata HOM05D006422 ORTHO05D007992 1.4e-75 287.0 226 61.9
A10p19790 Brassica napus HOM05D006422 ORTHO05D007992 2.4e-75 286.2 198 69.7
BolC3t13599H Brassica oleracea HOM05D006422 ORTHO05D007992 2.4e-75 286.2 223 62.8
BraA10t44055Z Brassica rapa HOM05D006422 ORTHO05D007992 2.4e-75 286.2 198 69.7
arahy.Tifrunner.gnm1.ann1.D9GJPD Arachis hypogaea HOM05D006422 ORTHO05D007992 4.1e-75 285.4 190 71.6
BcaB01g04848 Brassica carinata HOM05D006422 ORTHO05D007992 5.4e-75 285.0 223 62.3
EL10Ac2g03719 Beta vulgaris HOM05D006422 ORTHO05D007992 7.0e-75 284.6 226 67.7
Actinidia03579 Actinidia chinensis HOM05D006422 ORTHO05D007992 9.2e-75 284.3 191 72.8
AUR62038756 Chenopodium quinoa HOM05D006422 ORTHO05D007992 9.2e-75 284.3 163 82.8
CDE04G2326 Ceratophyllum demersum HOM05D006422 ORTHO05D007992 2.1e-74 283.1 231 61.5
Carub.0006s1831 Capsella rubella HOM05D006422 ORTHO05D007992 6.0e-74 281.6 241 58.1
Haze_21696 Corylus avellana HOM05D006422 ORTHO05D007992 7.8e-74 281.2 158 85.4
HanXRQChr13g0412481 Helianthus annuus HOM05D006422 ORTHO05D007992 1.0e-73 280.8 223 63.2
Sc09g0007930 Simmondsia chinensis HOM05D006422 ORTHO05D007992 1.3e-73 280.4 219 64.8
HPP92_004705 Vanilla planifolia HOM05D006422 ORTHO05D007992 3.0e-73 279.3 203 68.5
Rhsim07G0170200 Rhododendron simsii HOM05D006422 ORTHO05D007992 5.1e-73 278.5 200 68.0
ATR0626G032 Amborella trichopoda HOM05D006422 ORTHO05D007992 4.3e-72 275.4 235 62.1
Glyma.17G201600 Glycine max HOM05D006422 ORTHO05D007992 5.6e-72 275.0 220 66.8
Lsat_1_v5_gn_5_61061 Lactuca sativa HOM05D006422 ORTHO05D007992 5.6e-72 275.0 194 69.1
DCAR_003025 Daucus carota HOM05D006422 ORTHO05D007992 6.2e-71 271.6 175 74.9
Nitab4.5_0003259g0070 Nicotiana tabacum HOM05D006422 ORTHO05D007992 6.2e-71 271.6 229 63.8
vmacro05107 Vaccinium macrocarpon HOM05D006422 ORTHO05D007992 2.0e-69 266.5 165 74.5
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 2.2e-68 263.1 239 61.5
FAN20G1184 Fragaria x ananassa HOM05D006422 ORTHO05D007992 4.9e-68 261.9 225 60.4
SGA_v2.0_scaffold27G11666 Striga asiatica HOM05D006422 ORTHO05D007992 4.9e-68 261.9 212 63.2
unitig_748.g7381 Utricularia gibba HOM05D006422 ORTHO05D007992 4.1e-67 258.8 216 62.5
Zm00001eb071430 Zea mays HOM05D006422 ORTHO05D007992 2.7e-66 256.1 215 63.3
CiPaw.08G017800 Carya illinoinensis HOM05D006422 ORTHO05D007992 5.1e-65 251.9 238 61.3
Os04g0607000 Oryza sativa ssp. japonica HOM05D006422 ORTHO05D007992 1.1e-64 250.8 174 70.1
ECA240G0283 Erigeron canadensis HOM05D000069 ORTHO05D000060 2.8e-63 246.1 233 53.6
Oeu018400.2 Olea europaea HOM05D006422 ORTHO05D007992 8.1e-63 244.6 155 72.3
SEGI_33970 Sequoiadendron giganteum HOM05D006422 ORTHO05D007992 1.5e-56 223.8 184 56.5
FAN15G3645 Fragaria x ananassa HOM05D006422 ORTHO05D007992 1.9e-56 223.4 206 56.8
Lj7A749G60 Lonicera japonica HOM05D006422 ORTHO05D007992 2.5e-56 223.0 122 84.4
Ah.11g043920 Amaranthus hybridus HOM05D006422 ORTHO05D007992 2.4e-51 206.5 190 58.9
AagrBONN_evm.TU.Sc2ySwM_228.4709 Anthoceros agrestis HOM05D006422 ORTHO05D007992 7.1e-51 204.9 171 53.8
MELO3C011201.2 Cucumis melo HOM05D006422 ORTHO05D007992 8.7e-49 198.0 179 59.8
SMO364G0843 Selaginella moellendorffii HOM05D006422 ORTHO05D007992 7.3e-48 194.9 164 56.1
CSS0034711 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.3e-47 194.1 144 68.1
Pp3c13_4790 Physcomitrium patens HOM05D006422 ORTHO05D007992 6.2e-47 191.8 171 47.4
Hma1.2p1_0534F.1_g173730 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 3.1e-46 189.5 185 57.8
Mapoly0021s0119 Marchantia polymorpha HOM05D006422 ORTHO05D007992 6.9e-46 188.3 205 46.3
CSS0017479 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.7e-44 183.7 133 69.2
Gorai.002G101300 Gossypium raimondii HOM05D006422 ORTHO05D007992 9.3e-43 177.9 112 75.9
CSS0035518 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.5e-32 144.1 114 62.3
Oeu014126.1 Olea europaea HOM05D006422 ORTHO05D007992 1.6e-31 140.6 93 75.3
CBR_g3792 Chara braunii HOM05D006422 ORTHO05D007992 3.7e-31 139.4 173 39.3
Cre12.g502250 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 1.5e-24 117.5 217 35.0
MCO15G093 Micromonas commoda HOM05D006422 ORTHO05D007992 6.3e-23 112.1 210 33.8
PRCOL_00004658 Prasinoderma coloniale HOM05D006422 ORTHO05D007992 2.5e-19 100.1 200 34.5
Cre07.g325736 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 6.7e-17 92.0 193 28.5
Hund19396 Selenicereus undatus HOM05D006422 ORTHO05D007992 7.4e-16 88.6 114 50.0
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 3.3e-08 63.2 168 26.8
Lsat_1_v5_gn_9_118240 Lactuca sativa HOM05D003483 ORTHO05D004101 4.4e-08 62.8 213 23.5
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 5.7e-08 62.4 215 25.6
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 2.2e-07 60.5 175 26.3
ECA240G0807 Erigeron canadensis HOM05D003483 ORTHO05D004101 2.2e-07 60.5 177 24.3
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 2.8e-07 60.1 171 23.4
MELO3C010097.2 Cucumis melo HOM05D003483 ORTHO05D004101 2.8e-07 60.1 226 26.1
SMO347G0483 Selaginella moellendorffii HOM05D003483 ORTHO05D004101 2.8e-07 60.1 180 24.4
Cc02_g22350 Coffea canephora HOM05D003483 ORTHO05D004101 3.7e-07 59.7 175 24.6
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 3.7e-07 59.7 237 24.1
SalBow6G7247 Salvia bowleyana HOM05D003483 ORTHO05D004101 3.7e-07 59.7 203 23.6
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 4.8e-07 59.3 172 24.4
CSS0026849 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 6.3e-07 58.9 173 24.9
CsaV3_1G045010 Cucumis sativus L. HOM05D003483 ORTHO05D004101 6.3e-07 58.9 233 24.5
Hma1.2p1_0557F.1_g178380 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 6.3e-07 58.9 180 23.3
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 6.3e-07 58.9 221 23.5
Nitab4.5_0002245g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 6.3e-07 58.9 172 24.4
SalBow6G5560 Salvia bowleyana HOM05D003483 ORTHO05D004101 6.3e-07 58.9 203 23.2
Pp3c1_42950 Physcomitrium patens HOM05D003483 ORTHO05D004101 8.2e-07 58.5 263 24.0
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 8.2e-07 58.5 172 23.8
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 1.4e-06 57.8 234 22.6
Nitab4.5_0003819g0040 Nicotiana tabacum HOM05D003483 ORTHO05D004101 1.4e-06 57.8 218 24.3
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 1.4e-06 57.8 170 24.1
Peaxi162Scf00011g00242 Petunia axillaris HOM05D003483 ORTHO05D004101 1.8e-06 57.4 172 23.8
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 1.8e-06 57.4 170 26.5
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 2.4e-06 57.0 229 21.4
FAN13G0976 Fragaria x ananassa HOM05D003483 ORTHO05D004101 2.4e-06 57.0 234 26.1
Os03g0704100 Oryza sativa ssp. japonica HOM05D003483 ORTHO05D004101 2.4e-06 57.0 186 24.2
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 2.4e-06 57.0 170 24.7
Sabra01G0161900 Salix brachista HOM05D003483 ORTHO05D004101 2.4e-06 57.0 172 26.2
TAR381G1595 Trochodendron aralioides HOM05D003483 ORTHO05D004101 2.4e-06 57.0 175 25.1
vmacro01768 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 2.4e-06 57.0 220 24.1
Dinv19357 Davidia involucrata HOM05D003483 ORTHO05D004101 3.1e-06 56.6 178 23.6
Glyma.08G185800 Glycine max HOM05D003483 ORTHO05D004101 3.1e-06 56.6 168 23.2
MD15G1421500 Malus domestica HOM05D003483 ORTHO05D004101 3.1e-06 56.6 182 24.2
Cre11.g478850 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 5.3e-06 55.8 199 24.1
Ca_00080_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 5.3e-06 55.8 229 23.6
Cc02_g22380 Coffea canephora HOM05D003483 ORTHO05D004101 5.3e-06 55.8 222 21.2
Nn1g08897 Nelumbo nucifera HOM05D003483 ORTHO05D004101 5.3e-06 55.8 248 23.0
Phvul.006G214200 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 5.3e-06 55.8 168 23.2
Sed0016447 Sechium edule HOM05D003483 ORTHO05D004101 5.3e-06 55.8 182 22.5
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 7.0e-06 55.5 218 22.5
CAN.G336.10 Capsicum annuum HOM05D003483 ORTHO05D004101 9.1e-06 55.1 177 20.9
ECA240G4797 Erigeron canadensis HOM05D003483 ORTHO05D008021 9.1e-06 55.1 179 22.3
Migut.N01039 Erythranthe guttata HOM05D003483 ORTHO05D004101 9.1e-06 55.1 185 22.7
Potri.001G209600 Populus trichocarpa HOM05D003483 ORTHO05D004101 9.1e-06 55.1 171 25.1
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 9.1e-06 55.1 205 25.4


User provided reference genes

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