Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G135600 Manihot esculenta HOM05D014278 ORTHO05D009846 2.4e-200 702.2 426 100.0
Potri.018G005500 Populus trichocarpa HOM05D014278 ORTHO05D009846 6.5e-44 182.6 449 42.8
Potri.006G274600 Populus trichocarpa HOM05D014278 ORTHO05D009846 8.5e-44 182.2 448 41.7
Sabra18G0011200 Salix brachista HOM05D014278 ORTHO05D009846 5.1e-41 172.9 452 42.3
Sabra18G0013600 Salix brachista HOM05D014278 ORTHO05D009846 8.8e-41 172.2 452 42.3
CiPaw.07G212500 Carya illinoinensis HOM05D013263 ORTHO05D009846 5.7e-24 116.3 397 36.5
Duzib187G1602 Durio zibethinus HOM05D019025 ORTHO05D009846 6.3e-23 112.8 443 33.9
Prupe.1G460100 Prunus persica HOM05D013263 ORTHO05D009846 2.4e-22 110.9 486 38.9
Duzib168G1354 Durio zibethinus HOM05D019025 ORTHO05D009846 4.1e-22 110.2 449 32.1
Ciclev10010613m.g Citrus clementina HOM05D014278 ORTHO05D009846 9.1e-22 109.0 465 33.8
MD15G1107800 Malus domestica HOM05D013263 ORTHO05D009846 2.0e-21 107.8 465 34.2
TWI32G0873 Tripterygium wilfordii HOM05D013263 ORTHO05D009846 3.6e-18 97.1 479 33.2
TWI34G1417 Tripterygium wilfordii HOM05D014278 ORTHO05D009846 7.5e-16 89.4 468 31.4
COL.COLO4_19033 Corchorus olitorius HOM05D019025 ORTHO05D009846 1.7e-15 88.2 436 35.8
Cfa013269 Carpinus fangiana HOM05D014278 ORTHO05D009846 2.2e-15 87.8 459 37.7
QL12p025151 Quercus lobata HOM05D013263 ORTHO05D009846 1.1e-14 85.5 463 33.9
MBI14_g19445_MAGBIO Magnolia biondii HOM05D021794 ORTHO05D009846 1.4e-14 85.1 433 30.5
Rhsim07G0169800 Rhododendron simsii HOM05D033576 ORTHO05D009846 1.2e-13 82.0 448 31.9
Atru.chr7.2642 Acer truncatum HOM05D019337 ORTHO05D009846 3.5e-13 80.5 449 28.1
THA.LOC104803324 Tarenaya hassleriana HOM05D008799 ORTHO05D010975 1.3e-12 78.6 395 31.6
Sed0008235 Sechium edule HOM05D019337 ORTHO05D009846 2.9e-12 77.4 455 32.7
PSO063G5953 Papaver somniferum HOM05D021794 ORTHO05D016335 6.5e-12 76.3 492 31.9
THA.LOC104814972 Tarenaya hassleriana HOM05D008799 ORTHO05D010975 1.1e-11 75.5 426 32.6
Gohir.A05G064300 Gossypium hirsutum HOM05D019025 ORTHO05D009846 4.2e-11 73.6 539 30.1
MELO3C011188.2 Cucumis melo HOM05D019337 ORTHO05D009846 5.5e-11 73.2 437 30.0
FAN15G3280 Fragaria x ananassa HOM05D013263 ORTHO05D009846 1.6e-10 71.6 466 33.7
FAN27G1111 Fragaria x ananassa HOM05D013263 ORTHO05D009846 2.1e-10 71.2 462 33.3
FvH4_2g36751 Fragaria vesca HOM05D013263 ORTHO05D009846 3.6e-10 70.5 461 33.2
Haze_21737 Corylus avellana HOM05D014278 ORTHO05D009846 1.0e-09 68.9 448 35.3
MD08G1128300 Malus domestica HOM05D013263 ORTHO05D009846 1.0e-09 68.9 472 30.5
Lj1g0027444 Lotus japonicus HOM05D013197 ORTHO05D009846 3.0e-09 67.4 488 32.6
Aqoxy7G02994 Aquilegia oxysepala HOM05D021794 ORTHO05D009846 4.0e-09 67.0 438 27.9
Gohir.D05G066900 Gossypium hirsutum HOM05D019025 ORTHO05D009846 6.8e-09 66.2 532 32.1
Cc00_g05330 Coffea canephora HOM05D009522 ORTHO05D009846 8.8e-09 65.9 447 30.2
Dinv21138 Davidia involucrata HOM05D003021 ORTHO05D009846 8.8e-09 65.9 53 67.9
Lsat_1_v5_gn_4_170321 Lactuca sativa HOM05D003021 ORTHO05D002235 1.2e-08 65.5 52 61.5
Cpa.g.sc23.16 Carica papaya HOM05D013263 ORTHO05D009846 1.5e-08 65.1 422 27.3
ClCG08G012670 Citrullus lanatus HOM05D019337 ORTHO05D009846 2.0e-08 64.7 476 30.3
HanXRQChr15g0488721 Helianthus annuus HOM05D003021 ORTHO05D002235 2.0e-08 64.7 48 68.8
RcHm_v2.0_Chr6g0304991 Rosa chinensis HOM05D013263 ORTHO05D009846 2.0e-08 64.7 474 32.9
Gorai.009G067700 Gossypium raimondii HOM05D019025 ORTHO05D009846 3.4e-08 63.9 515 32.2
Cc07_g03910 Coffea canephora HOM05D003021 ORTHO05D002235 5.7e-08 63.2 52 61.5
ECA232G0555 Erigeron canadensis HOM05D003021 ORTHO05D002235 5.7e-08 63.2 48 66.7
ATR0564G160 Amborella trichopoda HOM05D003021 ORTHO05D002235 7.5e-08 62.8 49 67.3
AUR62018150 Chenopodium quinoa HOM05D003021 ORTHO05D002235 2.2e-07 61.2 54 59.3
AUR62042563 Chenopodium quinoa HOM05D003021 ORTHO05D002235 2.2e-07 61.2 54 59.3
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 2.2e-07 61.2 48 64.6
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 2.8e-07 60.8 48 64.6
Oeu062145.1 Olea europaea HOM05D003021 ORTHO05D002235 2.8e-07 60.8 48 64.6
Os06g0695700 Oryza sativa ssp. japonica HOM05D021493 ORTHO05D020940 2.8e-07 60.8 56 57.1
Glyma.06G076700 Glycine max HOM05D013197 ORTHO05D012811 3.7e-07 60.5 451 33.7
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 4.9e-07 60.1 48 64.6
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 4.9e-07 60.1 55 58.2
CSS0009627 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 6.3e-07 59.7 48 62.5
CSS0042635 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 6.3e-07 59.7 48 62.5
CANSAT64G0795 Cannabis sativa HOM05D003021 ORTHO05D002235 6.3e-07 59.7 48 64.6
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 6.3e-07 59.7 48 62.5
Gohir.D04G045100 Gossypium hirsutum HOM05D003021 ORTHO05D002235 6.3e-07 59.7 48 62.5
Gorai.012G050300 Gossypium raimondii HOM05D003021 ORTHO05D002235 6.3e-07 59.7 48 62.5
PSO013G0053 Papaver somniferum HOM05D003021 ORTHO05D002235 6.3e-07 59.7 52 59.6
PSO063G0327 Papaver somniferum HOM05D003021 ORTHO05D002235 6.3e-07 59.7 52 59.6
Rhsim08G0073600 Rhododendron simsii HOM05D003021 ORTHO05D002235 6.3e-07 59.7 48 62.5
Sopen03g034540 Solanum pennellii HOM05D003021 ORTHO05D022173 6.3e-07 59.7 53 56.6
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 6.3e-07 59.7 48 62.5
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 8.3e-07 59.3 48 62.5
HanXRQChr09g0264151 Helianthus annuus HOM05D003021 ORTHO05D002235 8.3e-07 59.3 48 64.6
Medtr4g109220 Medicago truncatula HOM05D014856 ORTHO05D002235 8.3e-07 59.3 49 59.2
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 8.3e-07 59.3 48 62.5
Zm00001eb226400 Zea mays HOM05D021493 ORTHO05D020940 8.3e-07 59.3 47 63.8
CsaV3_2G031380 Cucumis sativus L. HOM05D019337 ORTHO05D009846 1.4e-06 58.5 475 29.3
Dinv38770 Davidia involucrata HOM05D003021 ORTHO05D002235 1.4e-06 58.5 56 53.6
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 1.8e-06 58.2 48 62.5
ECA240G3142 Erigeron canadensis HOM05D009522 ORTHO05D009846 2.4e-06 57.8 52 61.5
Glyma.17G076200 Glycine max HOM05D014856 ORTHO05D002235 2.4e-06 57.8 49 59.2
Hma1.2p1_1813F.1_g303770 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 2.4e-06 57.8 47 59.6
Hma1.2p1_3044F.1_g332070 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 2.4e-06 57.8 47 59.6
PGSC0003DMG400029280 Solanum tuberosum HOM05D009522 ORTHO05D009846 2.4e-06 57.8 474 28.3
CAN.G908.7 Capsicum annuum HOM05D009522 ORTHO05D009846 3.1e-06 57.4 445 26.5
CiPaw.04G058300 Carya illinoinensis HOM05D003021 ORTHO05D002235 3.1e-06 57.4 48 60.4
Ca_15666_v3 Cicer arietinum L. HOM05D013197 ORTHO05D009846 3.1e-06 57.4 44 65.9
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 3.1e-06 57.4 48 60.4
Lj9P468T32 Lonicera japonica HOM05D003021 ORTHO05D002235 3.1e-06 57.4 60 50.0
Nn3g17378 Nelumbo nucifera HOM05D003021 ORTHO05D002235 3.1e-06 57.4 48 60.4
Nitab4.5_0001211g0040 Nicotiana tabacum HOM05D003021 ORTHO05D022173 3.1e-06 57.4 53 52.8
RcHm_v2.0_Chr2g0166531 Rosa chinensis HOM05D003021 ORTHO05D002235 3.1e-06 57.4 48 60.4
MSTRG.23902 Avicennia marina HOM05D003021 ORTHO05D002235 4.1e-06 57.0 48 60.4
CSS0009655 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 4.1e-06 57.0 48 58.3
CAN.G479.38 Capsicum annuum HOM05D003021 ORTHO05D022173 4.1e-06 57.0 53 56.6
Ca_21794_v3 Cicer arietinum L. HOM05D014856 ORTHO05D002235 4.1e-06 57.0 49 59.2
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 4.1e-06 57.0 48 60.4
Glyma.05G023500 Glycine max HOM05D014856 ORTHO05D002235 4.1e-06 57.0 49 59.2
Gohir.A05G370400 Gossypium hirsutum HOM05D003021 ORTHO05D002235 4.1e-06 57.0 48 60.4
Peaxi162Scf00274g00005 Petunia axillaris HOM05D003021 ORTHO05D022173 4.1e-06 57.0 53 52.8
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 4.1e-06 57.0 48 60.4
Zm00001eb207990 Zea mays HOM05D021493 ORTHO05D020940 4.1e-06 57.0 46 63.0
Zm00001eb400410 Zea mays HOM05D003021 ORTHO05D002235 4.1e-06 57.0 48 60.4
Atru.chr8.382 Acer truncatum HOM05D003021 ORTHO05D002235 5.4e-06 56.6 48 58.3
arahy.Tifrunner.gnm1.ann1.JN5ZJX Arachis hypogaea HOM05D003021 ORTHO05D002235 5.4e-06 56.6 48 60.4
Dinv10680 Davidia involucrata HOM05D003021 ORTHO05D002235 5.4e-06 56.6 48 58.3
FAN20G1345 Fragaria x ananassa HOM05D013263 ORTHO05D009846 5.4e-06 56.6 459 32.2
Nn8g40403 Nelumbo nucifera HOM05D021794 ORTHO05D016335 5.4e-06 56.6 479 29.6
Os03g0211400 Oryza sativa ssp. japonica HOM05D003021 ORTHO05D002235 5.4e-06 56.6 45 64.4
SalBow1G6367 Salvia bowleyana HOM05D003021 ORTHO05D002235 5.4e-06 56.6 48 62.5
Lj2g0010760 Lotus japonicus HOM05D003021 ORTHO05D002235 7.0e-06 56.2 48 60.4
Nitab4.5_0002881g0010 Nicotiana tabacum HOM05D003021 ORTHO05D022173 7.0e-06 56.2 53 52.8
PSO170G4909 Papaver somniferum HOM05D021794 ORTHO05D016335 7.0e-06 56.2 489 29.9
Sabra17G0079400 Salix brachista HOM05D003021 ORTHO05D002235 7.0e-06 56.2 48 58.3
PGR083G2506 Punica granatum HOM05D003021 ORTHO05D002235 9.1e-06 55.8 43 65.1
TAR622G0013 Trochodendron aralioides HOM05D003021 ORTHO05D002235 9.1e-06 55.8 48 60.4


User provided reference genes

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