Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G135300 Manihot esculenta HOM05D007321 ORTHO05D009244 2.7e-280 968.0 490 100.0
Sabra16G0223900 Salix brachista HOM05D007321 ORTHO05D009244 2.3e-194 682.6 491 71.9
Potri.001G344800 Populus trichocarpa HOM05D007321 ORTHO05D009244 1.5e-193 679.9 491 71.5
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 6.2e-192 674.5 433 75.8
MD03G1054600 Malus domestica HOM05D007321 ORTHO05D009244 6.9e-191 671.0 470 71.5
RcHm_v2.0_Chr5g0072531 Rosa chinensis HOM05D007321 ORTHO05D009244 9.0e-191 670.6 489 70.3
VMungo0251G3312 Vigna mungo HOM05D007321 ORTHO05D009244 1.2e-190 670.2 472 71.8
Thecc.02G143600 Theobroma cacao HOM05D007321 ORTHO05D009244 5.8e-190 667.9 487 71.3
Dinv19324 Davidia involucrata HOM05D007321 ORTHO05D009244 3.8e-189 665.2 476 70.4
Phvul.002G206500 Phaseolus vulgaris HOM05D007321 ORTHO05D009244 6.5e-189 664.5 457 72.4
TWI59G1034 Tripterygium wilfordii HOM05D007321 ORTHO05D009244 8.4e-189 664.1 441 73.7
FvH4_3g40270 Fragaria vesca HOM05D007321 ORTHO05D009244 1.1e-188 663.7 489 69.1
Atru.chr6.902 Acer truncatum HOM05D007321 ORTHO05D009244 2.5e-188 662.5 496 68.3
CiPaw.05G039000 Carya illinoinensis HOM05D007321 ORTHO05D009244 5.5e-188 661.4 483 69.6
FAN25G3421 Fragaria x ananassa HOM05D007321 ORTHO05D009244 5.5e-188 661.4 489 69.1
Duzib052G0820 Durio zibethinus HOM05D007321 ORTHO05D009244 9.3e-188 660.6 488 69.3
Glyma.05G120300 Glycine max HOM05D007321 ORTHO05D009244 1.2e-187 660.2 485 68.9
Psat1g188000 Pisum sativum HOM05D007321 ORTHO05D009244 4.6e-187 658.3 456 71.9
Medtr4g094295 Medicago truncatula HOM05D007321 ORTHO05D009244 2.3e-186 656.0 456 70.4
PGR142G0984 Punica granatum HOM05D007321 ORTHO05D009244 8.7e-186 654.1 482 69.7
FAN21G2259 Fragaria x ananassa HOM05D007321 ORTHO05D009244 1.5e-185 653.3 469 70.4
FAN11G3563 Fragaria x ananassa HOM05D007321 ORTHO05D009244 4.3e-185 651.7 456 71.5
FAN16G2899 Fragaria x ananassa HOM05D007321 ORTHO05D009244 4.3e-185 651.7 456 71.5
QL11p019400 Quercus lobata HOM05D007321 ORTHO05D009244 4.3e-185 651.7 467 70.4
Eucgr.I02693 Eucalyptus grandis HOM05D007321 ORTHO05D009244 2.8e-184 649.0 493 67.3
Cfa005577 Carpinus fangiana HOM05D007321 ORTHO05D009244 1.4e-183 646.7 486 66.3
Ciclev10004047m.g Citrus clementina HOM05D007321 ORTHO05D009244 1.8e-183 646.4 454 72.7
Gohir.A04G112300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 1.8e-183 646.4 496 67.9
Gorai.012G140200 Gossypium raimondii HOM05D007321 ORTHO05D009244 1.8e-183 646.4 491 68.0
Lj5P243T60 Lonicera japonica HOM05D007321 ORTHO05D009244 3.1e-183 645.6 462 70.8
Nitab4.5_0007385g0020 Nicotiana tabacum HOM05D007321 ORTHO05D009244 3.1e-183 645.6 489 66.3
Solyc02g083410.4 Solanum lycopersicum HOM05D007321 ORTHO05D009244 5.3e-183 644.8 479 67.4
Sopen02g028190 Solanum pennellii HOM05D007321 ORTHO05D009244 6.9e-183 644.4 483 67.3
Gohir.D04G153300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 2.6e-182 642.5 491 67.8
Lj4g0025169 Lotus japonicus HOM05D007321 ORTHO05D009244 2.6e-182 642.5 486 68.1
PGSC0003DMG400003660 Solanum tuberosum HOM05D007321 ORTHO05D009244 5.9e-182 641.3 445 71.5
Lsat_1_v5_gn_7_80180 Lactuca sativa HOM05D007321 ORTHO05D009244 7.7e-182 641.0 454 70.9
Rhsim05G0110900 Rhododendron simsii HOM05D007321 ORTHO05D009244 1.7e-181 639.8 490 68.2
Nitab4.5_0002105g0030 Nicotiana tabacum HOM05D007321 ORTHO05D009244 2.9e-181 639.0 487 66.5
ClCG10G015890 Citrullus lanatus HOM05D007321 ORTHO05D009244 6.5e-181 637.9 432 72.2
Peaxi162Scf00328g00127 Petunia axillaris HOM05D007321 ORTHO05D009244 1.1e-180 637.1 482 66.2
BcaC05g29686 Brassica carinata HOM05D007321 ORTHO05D009244 1.9e-180 636.3 443 70.9
A05p39470 Brassica napus HOM05D007321 ORTHO05D009244 1.9e-180 636.3 441 71.0
Nn1g05198 Nelumbo nucifera HOM05D007321 ORTHO05D009244 1.9e-180 636.3 445 70.8
BraA05t22728Z Brassica rapa HOM05D007321 ORTHO05D009244 4.2e-180 635.2 441 70.7
Cc02_g21870 Coffea canephora HOM05D007321 ORTHO05D009244 4.2e-180 635.2 484 67.1
Actinidia28071 Actinidia chinensis HOM05D007321 ORTHO05D009244 5.5e-180 634.8 473 68.5
Oeu037200.1 Olea europaea HOM05D007321 ORTHO05D009244 5.5e-180 634.8 492 66.9
GSVIVG01029706001 Vitis vinifera HOM05D007321 ORTHO05D009244 5.5e-180 634.8 485 67.2
CANSAT80G1420 Cannabis sativa HOM05D007321 ORTHO05D009244 1.8e-178 629.8 444 70.5
Prupe.6G043200 Prunus persica HOM05D007321 ORTHO05D009244 1.8e-178 629.8 488 66.2
Sp3g07930 Schrenkiella parvula HOM05D007321 ORTHO05D009244 2.3e-178 629.4 485 65.4
MELO3C009790.2 Cucumis melo HOM05D007321 ORTHO05D009244 3.0e-178 629.0 432 70.6
Aqoxy6G00494 Aquilegia oxysepala HOM05D007321 ORTHO05D009244 1.1e-177 627.1 449 69.7
C05p58490 Brassica napus HOM05D007321 ORTHO05D009244 1.1e-177 627.1 443 69.5
ECA236G2671 Erigeron canadensis HOM05D007321 ORTHO05D009244 1.1e-177 627.1 490 65.1
BolC5t34500H Brassica oleracea HOM05D007321 ORTHO05D009244 3.3e-177 625.5 443 69.3
CARHR083990 Cardamine hirsuta HOM05D007321 ORTHO05D009244 3.3e-177 625.5 489 65.6
Carub.0003s0867 Capsella rubella HOM05D007321 ORTHO05D009244 9.7e-177 624.0 485 65.6
AT3G09580 Arabidopsis thaliana HOM05D007321 ORTHO05D009244 1.3e-176 623.6 487 65.1
AL3G20750 Arabidopsis lyrata HOM05D007321 ORTHO05D009244 1.7e-176 623.2 483 65.6
CsaV3_3G040590 Cucumis sativus L. HOM05D007321 ORTHO05D009244 4.8e-176 621.7 428 70.6
HanXRQChr11g0337111 Helianthus annuus HOM05D007321 ORTHO05D009244 6.3e-176 621.3 490 64.9
THA.LOC104826997 Tarenaya hassleriana HOM05D007321 ORTHO05D009244 6.3e-176 621.3 487 65.9
Migut.B00640 Erythranthe guttata HOM05D007321 ORTHO05D009244 9.1e-175 617.5 485 64.5
MSTRG.16564 Avicennia marina HOM05D007321 ORTHO05D009244 1.2e-174 617.1 460 67.6
DCAR_021840 Daucus carota HOM05D000446 ORTHO05D000321 2.6e-174 615.9 436 70.2
Sed0000618 Sechium edule HOM05D007321 ORTHO05D009244 1.0e-173 614.0 490 63.9
Lalb_Chr07g0189441 Lupinus albus HOM05D007321 ORTHO05D009244 8.5e-173 610.9 491 63.1
Aa31LG3G2030 Aethionema arabicum HOM05D007321 ORTHO05D009244 5.5e-172 608.2 489 65.0
EL10Ac8g19338 Beta vulgaris HOM05D007321 ORTHO05D009244 2.1e-171 606.3 453 68.2
Thhalv10003042m.g Eutrema salsugineum HOM05D007321 ORTHO05D009244 1.0e-170 604.0 442 67.2
Ah.14g085390 Amaranthus hybridus HOM05D007321 ORTHO05D009244 1.4e-170 603.6 480 64.8
PSO541G5651 Papaver somniferum HOM05D007321 ORTHO05D009244 1.1e-169 600.5 488 61.7
SGA_v2.0_scaffold332G48942 Striga asiatica HOM05D007321 ORTHO05D009244 3.3e-169 599.0 501 63.9
PSO675G7953 Papaver somniferum HOM05D007321 ORTHO05D009244 1.8e-167 593.2 458 63.8
Sc14g0002750 Simmondsia chinensis HOM05D007321 ORTHO05D009244 2.6e-166 589.3 446 66.4
AUR62027387 Chenopodium quinoa HOM05D007321 ORTHO05D009244 2.2e-165 586.3 410 70.5
MBI05_g36588_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 8.5e-165 584.3 484 62.4
SalBow5G3411 Salvia bowleyana HOM05D007321 ORTHO05D009244 3.2e-164 582.4 480 64.4
CSS0020188 Camellia sinensis var. sinensis HOM05D007321 ORTHO05D009244 5.2e-162 575.1 488 62.9
SEGI_02418 Sequoiadendron giganteum HOM05D007321 ORTHO05D009244 7.5e-153 544.7 448 60.7
ATR0580G200 Amborella trichopoda HOM05D007321 ORTHO05D009244 5.0e-149 531.9 457 59.7
Ca_18334_v3 Cicer arietinum L. HOM05D005078 ORTHO05D007574 4.2e-148 528.9 401 67.1
Pp3c2_19910 Physcomitrium patens HOM05D007321 ORTHO05D009244 5.7e-145 518.5 459 58.6
CDE06G0306 Ceratophyllum demersum HOM05D007321 ORTHO05D009244 1.8e-143 513.5 475 57.3
Mapoly0005s0009 Marchantia polymorpha HOM05D007321 ORTHO05D009244 3.1e-143 512.7 449 59.0
TPR.G10452 Trifolium pratense HOM05D007321 ORTHO05D009244 8.9e-138 494.6 370 65.1
SMO116G0156 Selaginella moellendorffii HOM05D007321 ORTHO05D009244 8.6e-133 478.0 429 55.9
AagrBONN_evm.TU.Sc2ySwM_344.1849 Anthoceros agrestis HOM05D007321 ORTHO05D009244 1.2e-123 447.6 436 51.1
Zm00001eb328010 Zea mays HOM05D007321 ORTHO05D009244 4.0e-122 442.6 443 53.0
TAR381G1665 Trochodendron aralioides HOM05D007321 ORTHO05D009244 7.1e-119 431.8 343 67.1
Cre12.g560900 Chlamydomonas reinhardtii HOM05D007321 ORTHO05D009244 4.0e-114 416.0 425 51.3
Os07g0626800 Oryza sativa ssp. japonica HOM05D007321 ORTHO05D009244 5.8e-113 412.1 407 53.8
CBR_g49724 Chara braunii HOM05D007321 ORTHO05D009244 3.8e-104 382.9 451 45.9
Cpa.g.sc52.12 Carica papaya HOM05D007321 ORTHO05D009244 4.9e-104 382.5 269 69.9
MCO04G135 Micromonas commoda HOM05D007321 ORTHO05D009244 1.0e-101 374.8 475 44.6
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 3.9e-101 372.9 423 46.6
CAN.G890.33 Capsicum annuum HOM05D007321 ORTHO05D009244 5.4e-95 352.4 490 43.1
MBI05_g44827_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 3.8e-88 329.7 345 54.2
AagrBONN_evm.TU.Sc2ySwM_344.1850 Anthoceros agrestis HOM05D007321 ORTHO05D009244 1.5e-68 264.6 220 57.3
unitig_8.g3471 Utricularia gibba HOM05D007321 ORTHO05D009244 2.2e-67 260.8 208 64.9
AUR62031301 Chenopodium quinoa HOM05D007321 ORTHO05D009244 3.0e-53 213.8 145 69.0
unitig_8.g3470 Utricularia gibba HOM05D007321 ORTHO05D009244 4.8e-51 206.5 147 61.9
MBI05_g44826_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 3.6e-38 163.7 117 63.2
HPP92_016846 Vanilla planifolia HOM05D007321 ORTHO05D009244 1.4e-26 125.2 105 60.0
TAR381G1585 Trochodendron aralioides HOM05D007321 ORTHO05D009244 1.5e-23 115.2 84 65.5
Atru.chr3.1763 Acer truncatum HOM05D002360 ORTHO05D006971 1.3e-11 75.5 491 23.4
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 8.3e-11 72.8 469 22.4
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 1.4e-10 72.0 470 21.5
CANSAT78G1063 Cannabis sativa HOM05D002360 ORTHO05D006971 2.4e-10 71.2 467 22.7
Lj9A539T91 Lonicera japonica HOM05D002360 ORTHO05D006971 2.4e-10 71.2 493 22.5
PSO135G0108 Papaver somniferum HOM05D002360 ORTHO05D006971 3.2e-10 70.9 501 22.4
Haze_11694 Corylus avellana HOM05D002360 ORTHO05D006971 7.0e-10 69.7 491 22.6
Rhsim12G0213700 Rhododendron simsii HOM05D002360 ORTHO05D006971 7.0e-10 69.7 490 23.1
Nn3g19797 Nelumbo nucifera HOM05D007321 ORTHO05D009244 1.6e-09 68.6 55 61.8
CsaV3_4G002690 Cucumis sativus L. HOM05D002360 ORTHO05D006971 3.5e-09 67.4 491 21.8
MELO3C017772.2 Cucumis melo HOM05D002360 ORTHO05D006971 4.6e-09 67.0 491 21.6
Lalb_Chr11g0075841 Lupinus albus HOM05D002360 ORTHO05D006971 1.3e-08 65.5 494 21.7
Sopen03g041530 Solanum pennellii HOM05D002360 ORTHO05D006971 1.3e-08 65.5 475 22.1
Solyc03g123760.3 Solanum lycopersicum HOM05D002360 ORTHO05D006971 3.0e-08 64.3 475 21.9
Phvul.001G264200 Phaseolus vulgaris HOM05D002360 ORTHO05D006971 3.9e-08 63.9 468 21.4
VMungo1383G0373 Vigna mungo HOM05D002182 ORTHO05D008382 5.0e-08 63.5 468 21.6
BcaB08g36967 Brassica carinata HOM05D007163 ORTHO05D009213 8.6e-08 62.8 177 29.9
TAR371G0365 Trochodendron aralioides HOM05D002360 ORTHO05D006971 1.1e-07 62.4 468 22.9
BraA10t44490Z Brassica rapa HOM05D007163 ORTHO05D009213 1.5e-07 62.0 197 25.4
C09p62940 Brassica napus HOM05D007163 ORTHO05D009213 1.9e-07 61.6 177 29.9
Pp3c1_4180 Physcomitrium patens HOM05D007163 ORTHO05D009213 1.9e-07 61.6 125 29.6
PGSC0003DMG400009156 Solanum tuberosum HOM05D002360 ORTHO05D006971 1.9e-07 61.6 475 21.5
BcaC04g19052 Brassica carinata HOM05D007163 ORTHO05D009213 2.5e-07 61.2 177 29.9
BolC9t59131H Brassica oleracea HOM05D007163 ORTHO05D009213 2.5e-07 61.2 196 28.6
A10p24250 Brassica napus HOM05D007163 ORTHO05D009213 5.6e-07 60.1 177 28.8
CAN.G790.47 Capsicum annuum HOM05D002360 ORTHO05D006971 9.5e-07 59.3 499 22.2
Nn3g16518 Nelumbo nucifera HOM05D007163 ORTHO05D009213 2.1e-06 58.2 177 27.1
Sp6g29810 Schrenkiella parvula HOM05D007163 ORTHO05D009213 2.1e-06 58.2 174 27.0
CARHR199120 Cardamine hirsuta HOM05D007163 ORTHO05D009213 6.2e-06 56.6 174 27.6
Aa31LG11G15010 Aethionema arabicum HOM05D007163 ORTHO05D009213 8.1e-06 56.2 174 27.6
AT5G14220 Arabidopsis thaliana HOM05D007163 ORTHO05D009213 8.1e-06 56.2 172 27.3
Lalb_Chr10g0106451 Lupinus albus HOM05D000461 ORTHO05D001840 8.1e-06 56.2 55 50.9
TPR.G38344 Trifolium pratense HOM05D007163 ORTHO05D009213 8.1e-06 56.2 194 25.8


User provided reference genes

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