Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 1.1e-53 213.0 103 100.0
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 2.5e-50 201.8 103 93.2
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 9.5e-50 199.9 103 92.2
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 1.2e-49 199.5 103 92.2
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 1.6e-49 199.1 103 93.2
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 6.1e-49 197.2 102 90.2
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 6.1e-49 197.2 103 89.3
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 1.4e-48 196.1 103 89.3
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 1.8e-48 195.7 103 90.3
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 1.8e-48 195.7 103 88.3
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.3e-48 195.3 101 91.1
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 4.0e-48 194.5 103 88.3
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 5.2e-48 194.1 103 87.4
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 8.9e-48 193.4 101 90.1
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.5e-47 192.6 103 86.4
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 2.0e-47 192.2 103 86.4
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 2.6e-47 191.8 103 87.4
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 3.4e-47 191.4 100 90.0
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 3.4e-47 191.4 103 86.4
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 4.4e-47 191.0 112 83.9
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 5.8e-47 190.7 103 87.4
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 7.5e-47 190.3 103 86.4
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 7.5e-47 190.3 103 86.4
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 7.5e-47 190.3 101 88.1
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 7.5e-47 190.3 101 88.1
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 1.3e-46 189.5 103 86.4
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 1.7e-46 189.1 103 85.4
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 2.2e-46 188.7 103 86.4
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 2.2e-46 188.7 99 88.9
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 2.2e-46 188.7 103 84.5
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 2.2e-46 188.7 103 86.4
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 3.7e-46 188.0 100 87.0
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 4.9e-46 187.6 103 85.4
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 4.9e-46 187.6 103 87.4
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 4.9e-46 187.6 103 87.4
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 4.9e-46 187.6 103 87.4
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 4.9e-46 187.6 103 84.5
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 6.4e-46 187.2 103 86.4
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 6.4e-46 187.2 103 85.4
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 8.3e-46 186.8 103 87.4
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 8.3e-46 186.8 103 85.4
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 1.1e-45 186.4 103 86.4
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 1.4e-45 186.0 103 83.5
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 1.9e-45 185.7 102 84.3
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 2.4e-45 185.3 102 83.3
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 3.2e-45 184.9 102 83.3
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 5.4e-45 184.1 103 83.5
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 9.2e-45 183.3 107 85.0
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 1.2e-44 183.0 100 83.0
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.2e-44 183.0 100 86.0
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 2.0e-44 182.2 101 85.1
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 2.7e-44 181.8 101 83.2
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 2.7e-44 181.8 101 83.2
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 4.6e-44 181.0 102 82.4
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 4.6e-44 181.0 102 84.3
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 6.0e-44 180.6 100 82.0
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 6.0e-44 180.6 102 81.4
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 7.8e-44 180.3 114 77.2
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 1.7e-43 179.1 103 80.6
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 2.3e-43 178.7 103 78.6
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 2.3e-43 178.7 103 82.5
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 2.3e-43 178.7 100 83.0
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 5.0e-43 177.6 103 79.6
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 6.6e-43 177.2 99 82.8
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 8.6e-43 176.8 102 81.4
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.1e-42 176.4 101 79.2
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 1.9e-42 175.6 101 78.2
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 2.5e-42 175.3 94 86.2
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 3.3e-42 174.9 100 82.0
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 3.3e-42 174.9 99 82.8
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 3.3e-42 174.9 99 82.8
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 4.3e-42 174.5 100 78.0
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 4.3e-42 174.5 99 79.8
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 5.6e-42 174.1 100 78.0
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 5.6e-42 174.1 92 88.0
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 7.3e-42 173.7 101 82.2
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 9.5e-42 173.3 101 76.2
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 9.5e-42 173.3 100 79.0
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 1.2e-41 172.9 101 77.2
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 3.6e-41 171.4 94 85.1
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 3.6e-41 171.4 105 81.0
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 4.7e-41 171.0 101 76.2
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 6.2e-41 170.6 99 77.8
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 6.2e-41 170.6 99 77.8
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 6.2e-41 170.6 99 77.8
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 6.2e-41 170.6 99 77.8
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 1.8e-40 169.1 98 77.6
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 3.1e-40 168.3 98 77.6
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 3.1e-40 168.3 101 75.2
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 5.2e-40 167.5 99 76.8
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 5.2e-40 167.5 101 78.2
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 1.2e-39 166.4 99 74.7
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 1.2e-39 166.4 98 76.5
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 2.6e-39 165.2 101 76.2
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 5.8e-39 164.1 98 74.5
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 7.5e-39 163.7 94 81.9
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 3.9e-35 151.4 101 70.3
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 3.9e-35 151.4 100 67.0
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 7.3e-34 147.1 92 71.7
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 1.6e-33 146.0 74 94.6
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 2.1e-33 145.6 101 63.4
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 3.6e-33 144.8 101 63.4
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 8.1e-33 143.7 74 91.9
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 4.0e-32 141.4 71 91.5
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 4.0e-32 141.4 74 89.2
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 1.2e-31 139.8 72 91.7
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 1.7e-30 136.0 99 54.5
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 6.4e-30 134.0 75 81.3
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 1.9e-29 132.5 71 87.3
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 7.1e-29 130.6 100 55.0
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 9.2e-29 130.2 82 70.7
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 1.6e-28 129.4 71 85.9
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 2.1e-28 129.0 74 82.4
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 4.6e-28 127.9 71 83.1
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 7.8e-28 127.1 72 81.9
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 1.1e-26 123.2 99 52.5
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 1.8e-24 115.9 69 75.4
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 6.8e-24 114.0 104 59.6
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 8.9e-24 113.6 76 64.5
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 1.3e-22 109.8 75 73.3
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 1.9e-21 105.9 75 73.3
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 3.2e-13 78.6 54 64.8
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 2.5e-10 68.9 51 64.7
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 1.6e-09 66.2 34 91.2
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 3.6e-09 65.1 34 88.2
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 3.6e-09 65.1 42 71.4
arahy.Tifrunner.gnm1.ann1.6H1017 Arachis hypogaea HOM05D007008 ORTHO05D008622 9.9e-07 57.0 31 83.9
A10p26800 Brassica napus HOM05D007008 ORTHO05D008622 1.3e-06 56.6 36 72.2


User provided reference genes

Program Settings