Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.2e-70 269.6 131 100.0
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 1.3e-30 136.7 89 74.2
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 8.1e-30 134.0 89 75.3
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.4e-26 123.2 88 68.2
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.4e-26 123.2 89 68.5
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.4e-26 123.2 89 68.5
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.4e-26 123.2 89 65.2
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.2e-26 122.1 90 67.8
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 5.5e-26 121.3 89 66.3
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.6e-25 119.8 89 64.0
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.1e-25 119.4 88 64.8
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 2.1e-25 119.4 92 65.2
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 2.7e-25 119.0 87 65.5
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 2.7e-25 119.0 92 65.2
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 2.7e-25 119.0 91 61.5
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 3.5e-25 118.6 88 62.5
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 3.5e-25 118.6 90 63.3
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 4.6e-25 118.2 89 62.9
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 6.0e-25 117.9 90 62.2
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 1.0e-24 117.1 89 64.0
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 1.0e-24 117.1 89 64.0
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 1.0e-24 117.1 87 65.5
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.3e-24 116.7 86 65.1
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 1.8e-24 116.3 89 64.0
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 1.8e-24 116.3 89 61.8
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 2.3e-24 115.9 88 63.6
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 2.3e-24 115.9 92 65.2
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 3.0e-24 115.5 89 64.0
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 3.0e-24 115.5 89 64.0
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 5.1e-24 114.8 89 66.3
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 5.1e-24 114.8 89 66.3
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 5.1e-24 114.8 89 66.3
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 5.1e-24 114.8 89 66.3
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 8.7e-24 114.0 89 62.9
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 1.1e-23 113.6 89 62.9
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 1.1e-23 113.6 92 58.7
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.5e-23 113.2 89 62.9
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 1.9e-23 112.8 89 62.9
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 2.5e-23 112.5 89 64.0
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 3.3e-23 112.1 92 56.5
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 4.3e-23 111.7 89 61.8
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 5.6e-23 111.3 89 64.0
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 7.4e-23 110.9 89 62.9
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 7.4e-23 110.9 89 65.2
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 7.4e-23 110.9 89 62.9
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 1.6e-22 109.8 92 60.9
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 2.1e-22 109.4 95 61.1
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 3.7e-22 108.6 92 58.7
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 6.2e-22 107.8 89 60.7
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 6.2e-22 107.8 89 60.7
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 6.2e-22 107.8 89 61.8
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 6.2e-22 107.8 95 61.1
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 8.1e-22 107.5 89 60.7
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 8.1e-22 107.5 89 60.7
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 8.1e-22 107.5 89 60.7
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 8.1e-22 107.5 89 60.7
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 8.1e-22 107.5 92 62.0
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 8.1e-22 107.5 89 56.2
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 8.1e-22 107.5 95 60.0
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 1.1e-21 107.1 89 58.4
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 1.1e-21 107.1 89 59.6
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.4e-21 106.7 92 56.5
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 1.4e-21 106.7 91 57.1
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 1.8e-21 106.3 90 56.7
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 1.8e-21 106.3 89 59.6
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 5.3e-21 104.8 92 57.6
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 6.9e-21 104.4 87 58.6
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.9e-21 104.4 91 58.2
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 6.9e-21 104.4 89 55.1
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 6.9e-21 104.4 92 60.9
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 9.0e-21 104.0 92 57.6
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 9.0e-21 104.0 95 58.9
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 9.0e-21 104.0 92 54.3
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 2.0e-20 102.8 92 57.6
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 3.4e-20 102.1 88 54.5
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 7.6e-20 100.9 89 60.7
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 1.3e-19 100.1 89 53.9
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.7e-19 99.8 92 56.5
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 1.7e-19 99.8 89 55.1
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.8e-19 98.6 91 56.0
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 8.4e-19 97.4 93 58.1
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 2.5e-18 95.9 77 59.7
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 3.2e-18 95.5 80 60.0
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 3.2e-18 95.5 89 56.2
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 3.2e-18 95.5 89 56.2
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 5.5e-18 94.7 84 59.5
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 5.5e-18 94.7 93 53.8
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 7.1e-18 94.4 86 53.5
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 1.2e-17 93.6 81 58.0
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.2e-17 93.6 86 55.8
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 3.5e-17 92.0 72 61.1
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 4.6e-17 91.7 89 55.1
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 1.0e-16 90.5 86 55.8
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 2.3e-16 89.4 85 55.3
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 5.1e-16 88.2 83 55.4
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 4.3e-15 85.1 83 53.0
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 4.3e-15 85.1 89 52.8
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.1e-14 82.8 85 51.8
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 2.8e-14 82.4 83 50.6
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 4.8e-14 81.6 80 51.2
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 4.8e-14 81.6 80 51.2
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 8.2e-14 80.9 90 46.7
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 1.8e-13 79.7 80 46.2
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 9.0e-13 77.4 105 44.8
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 2.0e-12 76.3 81 49.4
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 4.5e-12 75.1 86 46.5
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 7.6e-12 74.3 68 54.4
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 1.0e-11 73.9 75 52.0
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.2e-11 72.8 63 55.6
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 5.0e-11 71.6 69 49.3
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 5.0e-11 71.6 61 59.0
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 8.4e-11 70.9 72 52.8
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 8.4e-11 70.9 72 52.8
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 8.4e-11 70.9 81 46.9
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 8.4e-11 70.9 71 49.3
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 8.4e-11 70.9 89 44.9
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 1.1e-10 70.5 109 40.4
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 1.1e-10 70.5 61 55.7
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 1.4e-10 70.1 77 51.9
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 1.9e-10 69.7 70 50.0
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 3.2e-10 68.9 80 42.5
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 5.5e-10 68.2 61 57.4
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 5.5e-10 68.2 71 52.1
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 9.3e-10 67.4 61 54.1
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 1.2e-09 67.0 78 46.2
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 1.2e-09 67.0 78 46.2
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 2.1e-09 66.2 61 55.7
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.1e-09 66.2 62 56.5
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 2.7e-09 65.9 61 47.5
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 3.5e-09 65.5 61 54.1
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.5e-09 65.5 86 44.2
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.5e-09 65.5 86 44.2
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 3.5e-09 65.5 75 44.0
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 3.5e-09 65.5 72 47.2
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.6e-09 65.1 86 44.2
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 6.1e-09 64.7 87 43.7
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 6.1e-09 64.7 59 55.9
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 1.0e-08 63.9 72 48.6
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.3e-08 63.5 85 44.7
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 1.3e-08 63.5 70 44.3
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.8e-08 63.2 71 46.5
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.8e-08 63.2 61 50.8
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 3.9e-08 62.0 61 49.2
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 3.9e-08 62.0 61 49.2
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 3.9e-08 62.0 61 47.5
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 8.7e-08 60.8 59 52.5
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.1e-07 60.5 73 43.8
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 1.9e-07 59.7 92 40.2
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 1.9e-07 59.7 83 39.8
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 3.3e-07 58.9 59 44.1
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 3.3e-07 58.9 64 43.8
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 9.7e-07 57.4 62 48.4
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 1.6e-06 56.6 62 53.2
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 1.6e-06 56.6 62 53.2
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 2.2e-06 56.2 52 50.0
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 3.7e-06 55.5 62 51.6
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 3.7e-06 55.5 62 51.6
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 3.7e-06 55.5 62 51.6
Nn2g14054 Nelumbo nucifera HOM05D003524 ORTHO05D003988 8.2e-06 54.3 80 40.0
Nn2g14056 Nelumbo nucifera HOM05D003524 ORTHO05D003988 8.2e-06 54.3 80 40.0


User provided reference genes

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