Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 2310.4 1166 100.0
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1830.1 1202 77.2
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1819.7 1205 76.8
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1817.4 1196 77.0
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1814.7 1205 76.8
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1796.6 1202 76.3
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1796.6 1204 76.2
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1788.9 1205 76.3
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1787.7 1205 76.2
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1780.8 1196 76.2
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1766.5 1205 75.5
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1752.3 1294 70.2
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1751.1 1205 74.2
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1745.3 1204 74.0
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1740.3 1198 73.4
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1738.0 1200 73.8
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1734.9 1204 73.0
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1733.0 1201 73.4
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1732.6 1207 73.5
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1729.5 1208 72.8
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1728.0 1200 72.7
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1726.1 1203 73.2
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1723.0 1204 73.3
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1716.4 1204 72.9
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1716.4 1196 72.9
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1714.1 1219 72.1
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1713.7 1209 73.3
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1713.4 1206 73.2
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1713.0 1202 73.0
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1711.8 1203 72.7
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1711.4 1209 73.3
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1710.3 1205 72.4
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1709.1 1219 72.3
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1707.2 1205 72.0
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1701.4 1196 73.6
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1698.3 1199 72.2
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1697.6 1206 72.1
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1696.8 1219 71.9
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1694.5 1195 72.1
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1692.6 1203 71.4
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1688.3 1202 72.0
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1687.9 1279 68.6
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1687.5 1131 76.1
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1686.0 1194 71.7
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1684.5 1194 71.7
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1684.5 1194 71.6
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1683.3 1194 71.6
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1682.5 1203 71.7
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1682.2 1205 70.9
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1682.2 1202 71.2
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1681.0 1195 71.5
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1680.6 1195 71.7
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1678.7 1290 68.6
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1678.7 1290 68.6
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1678.7 1197 71.3
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1676.0 1195 71.3
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1676.0 1209 70.6
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1675.6 1202 71.0
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1673.3 1195 71.3
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1672.1 1202 70.9
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1670.2 1217 70.3
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1667.1 1199 70.6
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1666.0 1009 83.8
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1663.3 1206 70.8
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1656.0 1199 70.6
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1652.9 1196 69.8
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1651.7 1199 70.6
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1649.8 1200 70.8
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1649.4 1198 70.9
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1642.1 1205 70.2
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1636.7 1195 70.2
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1624.8 1192 69.0
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1622.8 1201 69.0
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1619.0 1192 68.8
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1618.2 1232 68.5
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1612.4 1101 75.7
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1610.1 1346 65.1
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1609.3 1194 68.5
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1600.9 1191 68.3
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1599.3 1194 68.5
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1584.3 1215 66.7
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1583.2 1185 69.1
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1569.7 1194 68.8
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1557.0 1188 66.8
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1528.8 1208 66.9
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1528.5 1216 64.8
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1482.6 998 76.3
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1479.2 1193 65.2
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1470.3 1033 72.5
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1465.3 1046 71.9
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1461.8 1049 71.2
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1446.8 1193 62.4
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1438.7 1204 61.0
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1413.7 1212 60.1
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1382.1 982 72.6
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1372.5 982 71.9
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1338.6 989 69.5
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1292.7 1058 63.4
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1280.8 899 73.9
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1247.3 852 74.8
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1240.7 1221 53.9
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1214.5 930 67.2
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1166.4 865 68.1
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1150.2 1235 50.8
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1088.9 904 63.1
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 4.1e-298 1028.5 1224 47.6
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 3.8e-296 1021.9 1224 47.8
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.0e-253 879.4 1190 42.4
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 3.4e-244 849.4 1324 39.6
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.7e-230 802.4 1231 40.0
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 3.2e-218 763.1 518 75.5
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.4e-210 736.9 1137 40.4
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 1.4e-176 624.8 424 75.0
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.2e-145 521.9 475 60.4
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 1.4e-144 518.5 329 77.5
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 5.2e-144 516.5 306 81.4
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 9.8e-143 512.3 431 61.3
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.3e-142 511.9 744 41.9
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 3.5e-124 450.7 324 67.6
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 7.1e-117 426.4 356 65.2
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 6.2e-113 413.3 328 66.2
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 1.1e-112 412.5 292 71.9
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 4.2e-101 374.0 361 55.7
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 2.1e-89 335.1 309 56.0
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 1.8e-88 332.0 288 55.2
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 4.2e-85 320.9 389 47.0
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.1e-77 296.2 255 60.4
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 1.2e-60 239.6 157 72.6
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 1.9e-53 215.7 269 45.4
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 8.8e-51 206.8 116 80.2
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 3.1e-48 198.4 117 75.2
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 5.9e-47 194.1 125 74.4
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.3e-46 193.0 138 66.7
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 4.7e-44 184.5 164 56.1
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 6.5e-38 164.1 145 62.1
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 8.8e-35 153.7 190 51.1
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 9.8e-34 150.2 304 32.2
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.7e-33 149.4 282 35.5
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 3.1e-32 145.2 163 50.9
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 2.0e-31 142.5 86 84.9
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 3.7e-25 121.7 164 42.1
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 9.5e-21 107.1 75 64.0
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 2.0e-18 99.4 59 78.0
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 2.0e-18 99.4 62 74.2
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.5e-13 83.2 234 32.1
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 1.2e-12 80.1 47 76.6
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 6.8e-11 74.3 55 65.5
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 1.2e-10 73.6 70 54.3
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 2.6e-10 72.4 80 58.8
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 2.6e-10 72.4 80 58.8
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 4.4e-10 71.6 75 56.0
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 2.2e-09 69.3 39 79.5
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 6.4e-09 67.8 52 61.5
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 5.4e-08 64.7 69 55.1


User provided reference genes

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