Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 1.3e-69 266.2 126 100.0
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 5.4e-39 164.5 121 67.8
Sabra18G0025300 Salix brachista HOM05D008824 ORTHO05D003125 8.6e-29 130.6 128 55.5
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 1.1e-28 130.2 132 54.5
Potri.003G070750 Populus trichocarpa HOM05D008824 ORTHO05D003125 1.4e-26 123.2 127 52.0
Sabra06G0202600 Salix brachista HOM05D008824 ORTHO05D003125 2.6e-25 119.0 132 51.5
TWI34G0986 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 6.6e-21 104.4 115 48.7
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 4.0e-18 95.1 114 48.2
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 2.6e-17 92.4 130 40.0
Potri.003G048200 Populus trichocarpa HOM05D008824 ORTHO05D003125 3.4e-17 92.0 70 57.1
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 7.6e-17 90.9 118 46.6
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 9.9e-17 90.5 123 47.2
TWI34G1900 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 9.9e-17 90.5 112 50.9
Aa31LG3G16070 Aethionema arabicum HOM05D008824 ORTHO05D003125 1.7e-16 89.7 147 39.5
BraA10t44721Z Brassica rapa HOM05D008824 ORTHO05D003125 2.2e-16 89.4 147 38.8
Thhalv10016092m.g Eutrema salsugineum HOM05D008824 ORTHO05D003125 2.2e-16 89.4 148 38.5
BcaC04g19263 Brassica carinata HOM05D008824 ORTHO05D003125 2.9e-16 89.0 148 38.5
A10p26630 Brassica napus HOM05D008824 ORTHO05D003125 2.9e-16 89.0 148 38.5
C09p65790 Brassica napus HOM05D008824 ORTHO05D003125 2.9e-16 89.0 148 38.5
BolC9t59401H Brassica oleracea HOM05D008824 ORTHO05D003125 2.9e-16 89.0 148 38.5
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 3.8e-16 88.6 113 47.8
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 6.4e-16 87.8 127 40.2
AT5G11070 Arabidopsis thaliana HOM05D008824 ORTHO05D003125 8.4e-16 87.4 145 37.2
CARHR202220 Cardamine hirsuta HOM05D008824 ORTHO05D003125 8.4e-16 87.4 153 36.6
AL6G21690 Arabidopsis lyrata HOM05D008824 ORTHO05D003125 2.4e-15 85.9 149 36.2
C03p05580 Brassica napus HOM05D008824 ORTHO05D003125 4.2e-15 85.1 141 37.6
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 9.3e-15 84.0 120 44.2
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 9.3e-15 84.0 120 45.0
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.2e-14 83.6 111 45.0
BcaNung07098 Brassica carinata HOM05D008824 ORTHO05D003125 2.1e-14 82.8 144 36.1
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.1e-14 82.8 114 46.5
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.7e-14 82.4 111 44.1
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.7e-14 82.4 115 48.7
Sp6g32430 Schrenkiella parvula HOM05D008824 ORTHO05D003125 3.5e-14 82.0 145 35.9
BcaB01g05491 Brassica carinata HOM05D008824 ORTHO05D003125 4.6e-14 81.6 146 36.3
BcaB01g06316 Brassica carinata HOM05D008824 ORTHO05D003125 4.6e-14 81.6 146 36.3
BolC3t13066H Brassica oleracea HOM05D008824 ORTHO05D003125 4.6e-14 81.6 146 36.3
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 6.0e-14 81.3 127 40.9
A03p04850 Brassica napus HOM05D008824 ORTHO05D003125 6.0e-14 81.3 150 37.3
BraA03t09824Z Brassica rapa HOM05D008824 ORTHO05D003125 6.0e-14 81.3 150 37.3
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 6.0e-14 81.3 119 45.4
BcaNung01909 Brassica carinata HOM05D008824 ORTHO05D003125 7.9e-14 80.9 148 36.5
BcaNung01911 Brassica carinata HOM05D008824 ORTHO05D003125 7.9e-14 80.9 148 36.5
BraA02t05065Z Brassica rapa HOM05D008824 ORTHO05D003125 7.9e-14 80.9 145 36.6
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 1.0e-13 80.5 132 36.4
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 1.3e-13 80.1 137 38.7
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 1.3e-13 80.1 109 44.0
Carub.0006s0958 Capsella rubella HOM05D008824 ORTHO05D003125 5.1e-13 78.2 160 33.8
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 8.7e-13 77.4 110 40.0
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.1e-12 77.0 118 40.7
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.1e-12 77.0 121 43.8
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 2.5e-12 75.9 115 43.5
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.5e-12 75.9 125 42.4
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.5e-12 75.9 125 42.4
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 5.6e-12 74.7 87 50.6
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 5.6e-12 74.7 118 41.5
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 5.6e-12 74.7 118 41.5
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 7.4e-12 74.3 77 50.6
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 7.4e-12 74.3 117 39.3
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 9.6e-12 73.9 117 40.2
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 1.3e-11 73.6 125 37.6
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 1.6e-11 73.2 111 38.7
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 1.6e-11 73.2 119 35.3
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 2.8e-11 72.4 113 39.8
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 3.6e-11 72.0 141 38.3
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 4.8e-11 71.6 93 48.4
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 4.8e-11 71.6 142 38.0
A02p00820 Brassica napus HOM05D008824 ORTHO05D003125 6.2e-11 71.2 99 39.4
BolC2t06442H Brassica oleracea HOM05D008824 ORTHO05D003125 6.2e-11 71.2 82 41.5
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 6.2e-11 71.2 112 43.8
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 8.1e-11 70.9 121 40.5
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 8.1e-11 70.9 102 42.2
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 8.1e-11 70.9 128 36.7
BcaC03g13348 Brassica carinata HOM05D008824 ORTHO05D003125 1.1e-10 70.5 122 38.5
C02p04840 Brassica napus HOM05D008824 ORTHO05D003125 1.1e-10 70.5 122 38.5
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 1.1e-10 70.5 130 36.2
Cpa.g.sc187.25 Carica papaya HOM05D008824 ORTHO05D003125 1.4e-10 70.1 77 45.5
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 1.4e-10 70.1 120 39.2
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.4e-10 70.1 108 38.9
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.4e-10 70.1 108 38.9
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 1.4e-10 70.1 120 38.3
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.4e-10 70.1 113 41.6
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 1.8e-10 69.7 143 35.7
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 1.8e-10 69.7 143 32.2
Lalb_Chr24g0402081 Lupinus albus HOM05D013068 ORTHO05D003125 2.4e-10 69.3 132 35.6
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 2.4e-10 69.3 123 35.0
Peaxi162Scf00315g00011 Petunia axillaris HOM05D003969 ORTHO05D003125 3.1e-10 68.9 115 35.7
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 4.0e-10 68.6 114 36.8
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.0e-10 68.6 109 39.4
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 5.3e-10 68.2 118 36.4
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 6.9e-10 67.8 124 38.7
Gorai.009G060100 Gossypium raimondii HOM05D003969 ORTHO05D003125 6.9e-10 67.8 109 39.4
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 9.0e-10 67.4 59 47.5
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 9.0e-10 67.4 127 36.2
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 9.0e-10 67.4 121 37.2
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.2e-09 67.0 116 32.8
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.2e-09 67.0 132 33.3
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 1.2e-09 67.0 130 35.4
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 1.2e-09 67.0 122 38.5
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 1.2e-09 67.0 129 36.4
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.5e-09 66.6 121 34.7
Medtr1g012950 Medicago truncatula HOM05D013068 ORTHO05D003125 1.5e-09 66.6 131 33.6
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.0e-09 66.2 130 35.4
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 2.6e-09 65.9 121 37.2
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 3.4e-09 65.5 77 48.1
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 3.4e-09 65.5 62 50.0
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 3.4e-09 65.5 112 37.5
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 4.5e-09 65.1 118 35.6
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 5.8e-09 64.7 114 39.5
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 5.8e-09 64.7 116 39.7
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 5.8e-09 64.7 117 38.5
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 5.8e-09 64.7 126 35.7
Phvul.001G047400 Phaseolus vulgaris HOM05D013068 ORTHO05D003125 7.6e-09 64.3 127 30.7
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 7.6e-09 64.3 61 54.1
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 9.9e-09 63.9 96 36.5
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 9.9e-09 63.9 96 36.5
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 1.3e-08 63.5 121 34.7
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 1.3e-08 63.5 126 36.5
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.7e-08 63.2 77 48.1
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 1.7e-08 63.2 112 38.4
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.2e-08 62.8 118 38.1
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.9e-08 62.4 119 39.5
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 2.9e-08 62.4 59 49.2
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 2.9e-08 62.4 141 36.9
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 2.9e-08 62.4 73 45.2
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.9e-08 62.4 127 36.2
CANSAT01G2013 Cannabis sativa HOM05D008824 ORTHO05D003125 3.8e-08 62.0 110 39.1
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.8e-08 62.0 131 37.4
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 3.8e-08 62.0 113 38.1
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 3.8e-08 62.0 78 44.9
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 3.8e-08 62.0 121 35.5
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 3.8e-08 62.0 110 36.4
MSTRG.10639 Avicennia marina HOM05D003969 ORTHO05D003125 4.9e-08 61.6 123 33.3
MSTRG.26029 Avicennia marina HOM05D003969 ORTHO05D003125 4.9e-08 61.6 79 44.3
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 4.9e-08 61.6 124 33.9
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 4.9e-08 61.6 118 36.4
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 4.9e-08 61.6 72 45.8
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 4.9e-08 61.6 127 36.2
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 4.9e-08 61.6 111 35.1
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.4e-08 61.2 77 46.8
FAN27G0582 Fragaria x ananassa HOM05D019695 ORTHO05D022679 6.4e-08 61.2 72 41.7
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.4e-08 61.2 141 36.9
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 6.4e-08 61.2 114 34.2
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 6.4e-08 61.2 110 35.5
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 8.4e-08 60.8 74 50.0
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 8.4e-08 60.8 64 54.7
SGA_v2.0_scaffold500G52494 Striga asiatica HOM05D003969 ORTHO05D003125 8.4e-08 60.8 59 42.4
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 8.4e-08 60.8 122 35.2
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.4e-07 60.1 77 48.1
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.4e-07 60.1 77 48.1
Sed0014973 Sechium edule HOM05D003969 ORTHO05D003125 1.4e-07 60.1 119 31.1
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 1.9e-07 59.7 116 36.2
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 2.4e-07 59.3 115 38.3
MELO3C030306.2 Cucumis melo HOM05D008824 ORTHO05D003125 2.4e-07 59.3 77 40.3
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.4e-07 59.3 79 46.8
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 2.4e-07 59.3 80 43.8
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 3.2e-07 58.9 116 37.9
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 3.2e-07 58.9 66 45.5
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 4.2e-07 58.5 110 33.6
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 4.2e-07 58.5 62 51.6
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 5.5e-07 58.2 62 51.6
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 9.3e-07 57.4 116 31.9
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 1.2e-06 57.0 63 46.0
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.2e-06 57.0 69 47.8
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 1.2e-06 57.0 112 35.7
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 1.6e-06 56.6 64 45.3
SGA_v2.0_scaffold64G21997 Striga asiatica HOM05D003969 ORTHO05D003125 1.6e-06 56.6 88 40.9
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 2.1e-06 56.2 118 34.7
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 2.1e-06 56.2 118 34.7
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 2.1e-06 56.2 59 52.5
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 2.7e-06 55.8 117 31.6
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 4.6e-06 55.1 114 36.0
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 4.6e-06 55.1 142 32.4
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 6.0e-06 54.7 129 34.9
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 6.0e-06 54.7 93 37.6
Lsat_1_v5_gn_5_39780 Lactuca sativa HOM05D003969 ORTHO05D003125 6.0e-06 54.7 126 33.3
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 6.0e-06 54.7 114 33.3
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.9e-06 54.3 69 44.9
QL02p091243 Quercus lobata HOM05D003969 ORTHO05D003125 7.9e-06 54.3 146 30.8


User provided reference genes

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