Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 4.1e-108 394.8 209 100.0
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 3.1e-92 342.0 209 85.6
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 1.2e-86 323.6 208 80.8
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.5e-86 323.2 208 80.8
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 9.8e-86 320.5 209 78.9
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 2.2e-85 319.3 209 78.5
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 1.1e-84 317.0 206 80.6
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 7.0e-84 314.3 204 81.9
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.2e-83 313.5 204 80.9
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.6e-83 313.2 209 75.1
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 1.6e-83 313.2 208 79.3
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 2.0e-83 312.8 209 81.3
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 3.5e-83 312.0 199 79.9
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 4.5e-83 311.6 204 79.9
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.0e-82 310.5 192 84.9
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.3e-82 310.1 202 78.2
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.7e-82 309.7 192 84.9
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 8.6e-82 307.4 209 74.6
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 8.6e-82 307.4 192 83.9
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 1.1e-81 307.0 204 78.9
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.5e-81 306.6 199 80.4
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.5e-81 306.6 192 83.9
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.5e-81 305.8 199 77.9
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.5e-81 305.8 201 80.6
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 2.5e-81 305.8 204 77.9
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 5.5e-81 304.7 209 76.1
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 7.2e-81 304.3 202 78.7
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 7.2e-81 304.3 209 76.6
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 7.2e-81 304.3 198 80.8
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 9.5e-81 303.9 207 77.3
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.6e-80 303.1 204 77.5
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.6e-80 303.1 207 75.8
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 3.6e-80 302.0 202 78.2
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.6e-80 302.0 198 80.8
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 4.7e-80 301.6 193 77.2
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 6.1e-80 301.2 211 75.8
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 6.1e-80 301.2 202 78.2
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 6.1e-80 301.2 202 78.2
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 8.0e-80 300.8 204 77.0
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 8.0e-80 300.8 206 79.1
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.0e-79 300.4 207 74.4
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 2.3e-79 299.3 204 76.5
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 6.8e-79 297.7 197 78.7
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 6.8e-79 297.7 208 76.4
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 2.0e-78 296.2 223 71.3
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.4e-78 295.4 209 74.6
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.4e-78 295.4 209 74.6
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 4.4e-78 295.0 202 76.2
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.7e-78 294.7 192 78.6
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 7.5e-78 294.3 196 77.6
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 7.5e-78 294.3 202 74.8
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 9.8e-78 293.9 208 76.0
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.7e-77 293.1 212 74.5
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 1.7e-77 293.1 176 83.0
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.2e-77 292.7 191 78.5
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 6.3e-77 291.2 206 73.8
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 8.3e-77 290.8 180 79.4
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.1e-76 290.4 208 74.0
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 2.4e-76 289.3 196 77.0
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 3.1e-76 288.9 183 80.9
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 7.0e-76 287.7 198 74.7
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 7.0e-76 287.7 201 74.6
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 2.7e-75 285.8 197 73.6
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.9e-74 282.0 207 73.4
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 6.6e-74 281.2 207 73.4
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 8.6e-74 280.8 206 71.8
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.9e-73 279.6 206 71.8
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 3.3e-73 278.9 197 73.1
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 4.3e-73 278.5 200 72.0
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 5.6e-73 278.1 203 71.9
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.6e-73 278.1 206 70.9
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 7.3e-73 277.7 206 71.4
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 2.1e-72 276.2 211 71.1
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 3.6e-72 275.4 287 55.4
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 6.1e-72 274.6 161 84.5
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 6.1e-72 274.6 207 71.5
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.4e-71 273.5 194 69.1
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 6.8e-71 271.2 197 71.1
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 2.6e-70 269.2 158 84.2
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 4.4e-70 268.5 195 70.3
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 5.8e-70 268.1 206 68.9
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 5.8e-70 268.1 209 69.4
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.3e-69 266.9 203 69.0
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.3e-69 266.9 206 68.0
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.3e-69 266.9 198 70.2
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.2e-69 266.2 206 68.0
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.9e-69 265.8 194 72.7
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 3.7e-69 265.4 207 68.1
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 4.9e-69 265.0 206 68.9
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 8.3e-69 264.2 206 68.9
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 8.3e-69 264.2 207 68.6
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.1e-68 263.8 211 68.2
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 1.4e-68 263.5 203 68.0
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 2.4e-68 262.7 206 68.4
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 4.1e-68 261.9 197 67.5
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 5.4e-68 261.5 207 65.7
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 7.0e-68 261.2 209 65.1
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 9.2e-68 260.8 207 65.7
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.6e-67 260.0 208 67.3
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 2.7e-67 259.2 207 65.7
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 2.7e-67 259.2 206 67.0
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 3.5e-67 258.8 198 69.7
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 3.5e-67 258.8 206 68.0
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 2.3e-66 256.1 212 66.5
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 5.0e-66 255.0 212 66.0
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.1e-65 253.8 207 66.7
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 4.3e-65 251.9 201 69.7
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 4.3e-65 251.9 198 66.2
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 5.6e-65 251.5 199 63.8
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 7.3e-65 251.1 158 81.0
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 9.5e-65 250.8 166 78.3
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.6e-64 250.0 210 65.7
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 2.1e-64 249.6 201 64.7
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 3.6e-64 248.8 180 73.3
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 4.7e-64 248.4 175 71.4
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.8e-63 246.5 205 66.8
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 5.2e-63 245.0 202 66.8
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 6.8e-63 244.6 175 70.3
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.2e-62 243.8 193 67.9
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 2.7e-59 232.6 169 72.8
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 1.7e-58 229.9 178 66.3
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.5e-57 226.1 201 64.2
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 6.8e-55 218.0 125 88.0
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.9e-52 209.9 200 61.0
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.5e-51 205.7 124 83.1
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.0e-50 204.1 207 53.6
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 2.5e-49 199.5 121 81.0
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.3e-49 198.7 154 69.5
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 1.4e-44 183.7 168 55.4
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 3.2e-44 182.6 151 59.6
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.2e-44 182.2 189 55.0
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.6e-43 180.3 195 50.3
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.6e-43 180.3 197 53.3
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 2.7e-43 179.5 120 72.5
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 2.3e-42 176.4 104 87.5
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 8.7e-42 174.5 115 78.3
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 8.7e-42 174.5 110 82.7
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.4e-39 166.4 98 80.6
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 7.6e-38 161.4 183 47.0
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.7e-37 160.2 168 51.2
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.6e-35 153.7 150 51.3
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 3.6e-32 142.5 173 50.3
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 4.5e-30 135.6 125 60.0
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 2.5e-20 103.2 97 59.8
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.1e-19 100.1 208 37.0
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 6.0e-19 98.6 72 65.3
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 3.0e-18 96.3 78 61.5
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 5.1e-18 95.5 154 39.0
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 5.1e-18 95.5 55 76.4
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 1.5e-17 94.0 72 63.9
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 5.0e-13 79.0 188 33.0
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.4e-12 77.4 62 66.1
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 5.5e-12 75.5 93 48.4
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 6.7e-10 68.6 57 63.2
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 9.7e-09 64.7 39 82.1
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 1.1e-07 61.2 53 58.5


User provided reference genes

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