Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 1.4e-141 506.5 310 100.0
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 1.2e-79 300.8 262 82.8
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 3.3e-61 239.6 223 75.3
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 4.2e-61 239.2 223 75.3
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 4.0e-59 232.6 218 70.2
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 1.5e-58 230.7 222 74.8
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 6.3e-57 225.3 221 74.7
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 9.2e-56 221.5 220 75.5
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 1.2e-55 221.1 221 71.9
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 5.9e-55 218.8 219 71.2
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 7.8e-55 218.4 220 70.9
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 1.7e-54 217.2 223 73.5
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 2.9e-54 216.5 221 70.6
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 1.9e-53 213.8 220 73.2
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 5.6e-53 212.2 221 69.2
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 4.7e-52 209.1 222 69.8
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 1.8e-51 207.2 227 70.5
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 4.0e-51 206.1 221 69.7
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 8.9e-51 204.9 222 73.4
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 8.9e-51 204.9 222 73.4
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 2.6e-50 203.4 222 66.7
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 2.6e-50 203.4 219 69.4
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 3.4e-50 203.0 221 71.9
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 7.5e-50 201.8 253 61.3
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 2.9e-49 199.9 221 67.9
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 1.1e-48 198.0 223 70.4
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 1.1e-48 198.0 221 65.2
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 1.4e-48 197.6 219 72.6
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 1.8e-48 197.2 220 66.4
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 2.4e-48 196.8 269 62.5
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 4.1e-48 196.1 219 66.7
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 4.1e-48 196.1 221 68.8
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 5.4e-48 195.7 220 65.9
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 5.4e-48 195.7 220 65.9
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 9.2e-48 194.9 219 66.2
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 1.2e-47 194.5 225 65.8
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 1.2e-47 194.5 226 69.9
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 2.7e-47 193.4 216 63.4
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 1.3e-46 191.0 224 68.3
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 1.7e-46 190.7 228 64.0
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 3.9e-46 189.5 223 68.6
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 5.0e-46 189.1 220 65.9
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 1.5e-45 187.6 225 63.1
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 1.9e-45 187.2 224 67.4
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 1.9e-45 187.2 224 64.3
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 3.3e-45 186.4 225 67.1
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 3.3e-45 186.4 222 62.6
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 5.6e-45 185.7 225 60.4
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 9.5e-45 184.9 224 62.9
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 1.2e-44 184.5 224 66.1
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 3.6e-44 183.0 224 64.3
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 1.4e-43 181.0 225 62.7
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 3.1e-43 179.9 219 65.8
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 3.1e-43 179.9 221 64.7
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 4.0e-43 179.5 221 62.4
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 5.2e-43 179.1 225 61.3
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 5.2e-43 179.1 222 67.1
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 1.2e-42 177.9 221 62.4
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 1.5e-42 177.6 220 68.6
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 2.0e-42 177.2 224 61.6
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 7.5e-42 175.3 213 64.3
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 2.9e-41 173.3 225 60.0
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 4.9e-41 172.6 174 74.1
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 4.9e-41 172.6 220 64.1
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 8.3e-41 171.8 225 52.4
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 1.9e-40 170.6 166 74.7
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 1.9e-40 170.6 224 61.2
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 2.4e-40 170.2 221 65.2
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 3.2e-40 169.9 224 60.3
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 5.4e-40 169.1 224 64.7
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 9.2e-40 168.3 158 75.3
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 1.2e-39 167.9 222 61.7
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 4.6e-39 166.0 170 61.8
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 3.9e-38 162.9 171 60.8
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 5.0e-38 162.5 222 64.9
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 5.0e-38 162.5 223 57.8
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 1.5e-37 161.0 219 59.8
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 2.5e-37 160.2 214 63.6
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 7.3e-37 158.7 219 62.6
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 1.2e-36 157.9 215 58.1
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 1.6e-36 157.5 143 62.9
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 6.8e-35 152.1 222 61.3
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 1.5e-34 151.0 235 57.0
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 1.5e-34 151.0 163 73.6
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 3.2e-32 143.3 178 60.7
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 1.2e-31 141.4 217 60.8
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 2.1e-31 140.6 160 71.2
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 6.0e-31 139.0 129 72.1
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 4.0e-27 126.3 167 65.3
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 1.5e-26 124.4 157 61.8
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 2.0e-26 124.0 126 76.2
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 2.6e-26 123.6 231 52.4
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 7.6e-26 122.1 150 68.0
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 2.7e-23 113.6 105 78.1
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 3.9e-22 109.8 108 79.6
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 6.6e-22 109.0 179 55.3
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 4.3e-21 106.3 74 77.0
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 4.7e-20 102.8 88 60.2
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 6.2e-20 102.4 105 77.1
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 4.4e-18 96.3 210 46.7
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 7.6e-18 95.5 105 77.1
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 1.7e-17 94.4 234 44.4
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 2.9e-17 93.6 219 31.1
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 2.9e-17 93.6 172 52.9
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 6.4e-17 92.4 118 47.5
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 2.1e-15 87.4 157 40.8
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 1.3e-14 84.7 60 71.7
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 1.7e-14 84.3 93 52.7
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 1.7e-14 84.3 141 51.1
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 2.9e-09 67.0 116 41.4
Psat2g007880 Pisum sativum HOM05D007100 ORTHO05D008958 9.3e-08 62.0 81 46.9


User provided reference genes

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