Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G116800 Manihot esculenta HOM05D007609 ORTHO05D009539 9.6e-42 172.9 80 100.0
Manes.03G019500 Manihot esculenta HOM05D007609 ORTHO05D009539 6.5e-22 107.1 81 63.0
Sabra18G0066900 Salix brachista HOM05D007609 ORTHO05D009539 3.6e-20 101.3 80 61.2
Potri.006G159300 Populus trichocarpa HOM05D007609 ORTHO05D009539 1.0e-19 99.8 80 60.0
Potri.018G078900 Populus trichocarpa HOM05D007609 ORTHO05D009539 1.8e-19 99.0 81 61.7
TAR383G0714 Trochodendron aralioides HOM05D007609 ORTHO05D009539 1.3e-14 82.8 82 46.3
CSS0012617 Camellia sinensis var. sinensis HOM05D007609 ORTHO05D009539 1.9e-13 79.0 84 46.4
Thecc.09G111700 Theobroma cacao HOM05D007609 ORTHO05D009539 3.2e-13 78.2 79 46.8
TPR.G35275 Trifolium pratense HOM05D007609 ORTHO05D009539 9.4e-13 76.6 86 39.5
Haze_25706 Corylus avellana HOM05D007609 ORTHO05D009539 1.6e-12 75.9 89 48.3
Ca_25525_v3 Cicer arietinum L. HOM05D007609 ORTHO05D009539 4.7e-12 74.3 78 43.6
Lj2g0010717 Lotus japonicus HOM05D007609 ORTHO05D009539 6.1e-12 73.9 81 40.7
Gohir.A06G061700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.0e-11 73.2 80 43.8
Glyma.07G087100 Glycine max HOM05D007609 ORTHO05D009539 1.4e-11 72.8 78 43.6
Hma1.2p1_0018F.1_g013450 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 1.4e-11 72.8 83 49.4
Phvul.004G162600 Phaseolus vulgaris HOM05D007609 ORTHO05D009539 1.4e-11 72.8 80 48.8
Gohir.D06G060000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.3e-11 72.0 76 42.1
Nn8g39210 Nelumbo nucifera HOM05D007609 ORTHO05D009539 3.0e-11 71.6 77 48.1
Glyma.09G189800 Glycine max HOM05D007609 ORTHO05D009539 4.0e-11 71.2 82 41.5
Psat1g041120 Pisum sativum HOM05D007609 ORTHO05D009539 4.0e-11 71.2 67 43.3
Gorai.010G069800 Gossypium raimondii HOM05D007609 ORTHO05D009539 5.2e-11 70.9 80 42.5
Ciclev10010038m.g Citrus clementina HOM05D007609 ORTHO05D009539 6.7e-11 70.5 83 48.2
Lalb_Chr22g0352851 Lupinus albus HOM05D007609 ORTHO05D009539 8.8e-11 70.1 78 42.3
Gohir.A07G006801 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.0e-10 68.9 67 47.8
Gohir.D07G005100 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.6e-10 68.6 61 50.8
Hma1.2p1_0092F.1_g046650 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 2.6e-10 68.6 84 41.7
Gohir.D08G261700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 3.3e-10 68.2 80 46.2
Gorai.004G279800 Gossypium raimondii HOM05D007609 ORTHO05D009539 3.3e-10 68.2 80 46.2
Medtr6g086445 Medicago truncatula HOM05D007609 ORTHO05D009539 3.3e-10 68.2 85 37.6
TAR626G0143 Trochodendron aralioides HOM05D007609 ORTHO05D025968 3.3e-10 68.2 79 41.8
Cpa.g.sc451.1 Carica papaya HOM05D007609 ORTHO05D009539 4.4e-10 67.8 58 48.3
Gohir.A08G241000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 5.7e-10 67.4 80 46.2
Rhsim08G0221700 Rhododendron simsii HOM05D007609 ORTHO05D009539 5.7e-10 67.4 40 65.0
Aqoxy7G01699 Aquilegia oxysepala HOM05D007609 ORTHO05D009539 2.8e-09 65.1 88 37.5
Dinv38045 Davidia involucrata HOM05D007609 ORTHO05D009539 2.8e-09 65.1 80 40.0
Nn2g11764 Nelumbo nucifera HOM05D007609 ORTHO05D009539 3.7e-09 64.7 87 40.2
vmacro18908 Vaccinium macrocarpon HOM05D007609 ORTHO05D009539 3.7e-09 64.7 32 75.0
Eucgr.C03849 Eucalyptus grandis HOM05D007609 ORTHO05D009539 4.8e-09 64.3 48 60.4
Gorai.001G004700 Gossypium raimondii HOM05D007609 ORTHO05D009539 4.8e-09 64.3 60 51.7
FAN28G0995 Fragaria x ananassa HOM05D007609 ORTHO05D009539 1.8e-08 62.4 91 41.8
Atru.chr7.1339 Acer truncatum HOM05D007609 ORTHO05D009539 2.4e-08 62.0 73 46.6
FvH4_1g05030 Fragaria vesca HOM05D007609 ORTHO05D009539 2.4e-08 62.0 90 41.1
FAN26G1953 Fragaria x ananassa HOM05D007609 ORTHO05D009539 2.4e-08 62.0 90 41.1
FAN26G2876 Fragaria x ananassa HOM05D007609 ORTHO05D009539 2.4e-08 62.0 90 41.1
RcHm_v2.0_Chr2g0090641 Rosa chinensis HOM05D007609 ORTHO05D009539 2.4e-08 62.0 90 41.1
CiPaw.01G239000 Carya illinoinensis HOM05D007609 ORTHO05D009539 3.1e-08 61.6 82 43.9
CsaV3_1G030560 Cucumis sativus L. HOM05D007609 ORTHO05D009539 5.3e-08 60.8 77 44.2
VMungo0464G1934 Vigna mungo HOM05D007609 ORTHO05D009539 5.3e-08 60.8 67 44.8
HanXRQChr10g0317871 Helianthus annuus HOM05D007609 ORTHO05D009539 7.0e-08 60.5 61 44.3
Peaxi162Scf00560g00120 Petunia axillaris HOM05D007609 ORTHO05D009539 7.0e-08 60.5 72 41.7
Sc18g0001160 Simmondsia chinensis HOM05D007609 ORTHO05D009539 7.0e-08 60.5 49 49.0
Lalb_Chr05g0222821 Lupinus albus HOM05D007609 ORTHO05D009539 1.2e-07 59.7 91 42.9
Nitab4.5_0000351g0200 Nicotiana tabacum HOM05D007609 ORTHO05D009539 2.0e-07 58.9 32 68.8
Eucgr.C01049 Eucalyptus grandis HOM05D007609 ORTHO05D009539 2.7e-07 58.5 84 40.5
Lj4g0003308 Lotus japonicus HOM05D007609 ORTHO05D009539 2.7e-07 58.5 46 52.2
PGSC0003DMG400016536 Solanum tuberosum HOM05D007609 ORTHO05D009539 2.7e-07 58.5 35 60.0
Nitab4.5_0005851g0050 Nicotiana tabacum HOM05D007609 ORTHO05D009539 3.5e-07 58.2 37 56.8
Solyc06g066700.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 3.5e-07 58.2 31 67.7
unitig_899.g14776 Utricularia gibba HOM05D007609 ORTHO05D009539 3.5e-07 58.2 36 63.9
Cfa003264 Carpinus fangiana HOM05D007609 ORTHO05D009539 4.5e-07 57.8 87 39.1
COL.COLO4_34908 Corchorus olitorius HOM05D007609 ORTHO05D009539 4.5e-07 57.8 30 66.7
Lsat_1_v5_gn_5_101501 Lactuca sativa HOM05D007609 ORTHO05D009539 5.9e-07 57.4 48 54.2
AUR62016446 Chenopodium quinoa HOM05D007609 ORTHO05D009539 7.7e-07 57.0 47 48.9
DCAR_023052 Daucus carota HOM05D007609 ORTHO05D009539 7.7e-07 57.0 57 50.9
DCAR_028717 Daucus carota HOM05D007609 ORTHO05D009539 7.7e-07 57.0 34 64.7
Prupe.7G229700 Prunus persica HOM05D007609 ORTHO05D009539 7.7e-07 57.0 73 39.7
Solyc03g120155.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 7.7e-07 57.0 43 55.8
Medtr8g083460 Medicago truncatula HOM05D007609 ORTHO05D009539 1.0e-06 56.6 62 51.6
Sopen06g024990 Solanum pennellii HOM05D007609 ORTHO05D009539 1.0e-06 56.6 31 67.7
PGSC0003DMG400005605 Solanum tuberosum HOM05D007609 ORTHO05D009539 1.0e-06 56.6 27 77.8
Peaxi162Scf00015g00416 Petunia axillaris HOM05D007609 ORTHO05D009539 1.3e-06 56.2 39 56.4
Peaxi162Scf00207g00095 Petunia axillaris HOM05D007609 ORTHO05D009539 1.7e-06 55.8 28 67.9
QL05p023464 Quercus lobata HOM05D007609 ORTHO05D009539 1.7e-06 55.8 84 38.1
Sed0019634 Sechium edule HOM05D007609 ORTHO05D009539 1.7e-06 55.8 67 46.3
QL02p085521 Quercus lobata HOM05D007609 ORTHO05D009539 2.2e-06 55.5 80 41.2
PGSC0003DMG400005604 Solanum tuberosum HOM05D007609 ORTHO05D009539 2.2e-06 55.5 31 71.0
Sopen03g039030 Solanum pennellii HOM05D007609 ORTHO05D009539 2.9e-06 55.1 28 71.4
QL10p054851 Quercus lobata HOM05D007609 ORTHO05D009539 3.8e-06 54.7 55 45.5
Sed0020512 Sechium edule HOM05D007609 ORTHO05D009539 3.8e-06 54.7 41 58.5
Sopen03g039040 Solanum pennellii HOM05D007609 ORTHO05D009539 3.8e-06 54.7 40 57.5
TAR624G1182 Trochodendron aralioides HOM05D007609 ORTHO05D009539 3.8e-06 54.7 68 44.1
AUR62011005 Chenopodium quinoa HOM05D007609 ORTHO05D009539 5.0e-06 54.3 23 82.6
FAN23G1574 Fragaria x ananassa HOM05D007609 ORTHO05D009539 5.0e-06 54.3 28 78.6
Ah.14g081870 Amaranthus hybridus HOM05D007609 ORTHO05D009539 6.5e-06 53.9 42 57.1
CsaV3_7G033200 Cucumis sativus L. HOM05D010933 ORTHO05D013136 6.5e-06 53.9 82 39.0
Solyc03g120160.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 6.5e-06 53.9 41 58.5
ATR0559G294 Amborella trichopoda HOM05D007609 ORTHO05D009539 8.5e-06 53.5 83 36.1
Lsat_1_v5_gn_4_103641 Lactuca sativa HOM05D007609 ORTHO05D009539 8.5e-06 53.5 31 64.5


User provided reference genes

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