Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G116501 Manihot esculenta HOM05D007950 ORTHO05D009951 6.7e-31 136.7 70 100.0
RcHm_v2.0_Chr2g0090511 Rosa chinensis HOM05D007950 ORTHO05D009951 1.1e-25 119.4 70 84.3
MD15G1186200 Malus domestica HOM05D007950 ORTHO05D009951 4.2e-25 117.5 70 78.6
MD02G1047700 Malus domestica HOM05D007950 ORTHO05D009951 7.2e-25 116.7 70 78.6
FvH4_1g04841 Fragaria vesca HOM05D007950 ORTHO05D009951 2.1e-24 115.2 70 77.1
FAN19G2230 Fragaria x ananassa HOM05D007950 ORTHO05D009951 2.1e-24 115.2 70 77.1
GSVIVG01015395001 Vitis vinifera HOM05D007950 ORTHO05D009951 2.1e-24 115.2 70 75.7
Thecc.09G111000 Theobroma cacao HOM05D007950 ORTHO05D009951 4.7e-24 114.0 70 77.1
QL02p085472 Quercus lobata HOM05D007950 ORTHO05D009951 6.1e-24 113.6 69 73.9
FAN26G3407 Fragaria x ananassa HOM05D007950 ORTHO05D009951 7.9e-24 113.2 70 75.7
Eucgr.C01044 Eucalyptus grandis HOM05D007950 ORTHO05D009951 2.3e-23 111.7 70 74.3
FAN23G0617 Fragaria x ananassa HOM05D007950 ORTHO05D009951 3.9e-23 110.9 70 74.3
CSS0015996 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 8.8e-23 109.8 67 76.1
Ciclev10010772m.g Citrus clementina HOM05D007950 ORTHO05D009951 2.0e-22 108.6 70 71.4
Prupe.7G230500 Prunus persica HOM05D007950 ORTHO05D009951 5.7e-22 107.1 61 83.6
ClCG06G008510 Citrullus lanatus HOM05D007950 ORTHO05D009951 1.3e-21 105.9 70 71.4
Actinidia20354 Actinidia chinensis HOM05D007950 ORTHO05D009951 2.8e-21 104.8 68 69.1
CsaV3_1G030490 Cucumis sativus L. HOM05D007950 ORTHO05D009951 2.8e-21 104.8 67 71.6
Gohir.A06G062300 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.8e-21 104.8 68 72.1
vmacro20696 Vaccinium macrocarpon HOM05D007950 ORTHO05D009951 2.8e-21 104.8 70 64.3
CiPaw.03G232500 Carya illinoinensis HOM05D007950 ORTHO05D009951 3.7e-21 104.4 69 73.9
Gohir.D06G060600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.7e-21 104.4 68 70.6
Gorai.010G070600 Gossypium raimondii HOM05D007950 ORTHO05D009951 3.7e-21 104.4 68 70.6
Manes.03G020101 Manihot esculenta HOM05D007950 ORTHO05D009951 4.8e-21 104.0 70 75.7
CiPaw.04G164400 Carya illinoinensis HOM05D007950 ORTHO05D009951 8.2e-21 103.2 61 78.7
TAR636G2963 Trochodendron aralioides HOM05D007950 ORTHO05D009951 2.4e-20 101.7 68 69.1
QL05p023317 Quercus lobata HOM05D007950 ORTHO05D009951 3.1e-20 101.3 69 66.7
arahy.Tifrunner.gnm1.ann1.7G47EE Arachis hypogaea HOM05D007950 ORTHO05D009951 6.9e-20 100.1 70 68.6
arahy.Tifrunner.gnm1.ann1.U6R6BR Arachis hypogaea HOM05D007950 ORTHO05D009951 6.9e-20 100.1 70 68.6
PGR102G0372 Punica granatum HOM05D007950 ORTHO05D009951 7.7e-19 96.7 70 58.6
Potri.001G181701 Populus trichocarpa HOM05D007950 ORTHO05D009951 1.3e-18 95.9 67 64.2
Nn8g39199 Nelumbo nucifera HOM05D007950 ORTHO05D009951 5.0e-18 94.0 70 61.4
Nn2g11757 Nelumbo nucifera HOM05D007950 ORTHO05D009951 6.5e-18 93.6 70 60.0
Phvul.003G020900 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 6.5e-18 93.6 70 61.4
Thecc.06G089600 Theobroma cacao HOM05D007950 ORTHO05D009951 1.9e-17 92.0 68 61.8
CiPaw.02G150700 Carya illinoinensis HOM05D007950 ORTHO05D009951 4.2e-17 90.9 68 61.8
Psat1g042280 Pisum sativum HOM05D007950 ORTHO05D009951 5.5e-17 90.5 70 60.0
Gohir.D03G063400 Gossypium hirsutum HOM05D007950 ORTHO05D009951 9.4e-17 89.7 70 60.0
Gorai.002G059800 Gossypium raimondii HOM05D007950 ORTHO05D009951 9.4e-17 89.7 70 60.0
Gohir.1Z049586 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.6e-16 87.8 70 58.6
Gohir.D05G129500 Gossypium hirsutum HOM05D007950 ORTHO05D009951 6.1e-16 87.0 68 60.3
CSS0048253 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 8.0e-16 86.7 67 59.7
CSS0032282 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 1.4e-15 85.9 62 61.3
Gohir.A05G130600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.8e-15 85.5 68 58.8
TPR.G35274 Trifolium pratense HOM05D007950 ORTHO05D009951 2.3e-15 85.1 65 60.0
Lj3g0016273 Lotus japonicus HOM05D007950 ORTHO05D009951 3.9e-15 84.3 70 55.7
Sc10g0007380 Simmondsia chinensis HOM05D007950 ORTHO05D009951 5.2e-15 84.0 68 52.9
Haze_16407 Corylus avellana HOM05D007950 ORTHO05D009951 6.7e-15 83.6 66 60.6
Haze_16408 Corylus avellana HOM05D007950 ORTHO05D009951 6.7e-15 83.6 66 60.6
Medtr6g086645 Medicago truncatula HOM05D007950 ORTHO05D009951 8.8e-15 83.2 68 58.8
Potri.003G054001 Populus trichocarpa HOM05D007950 ORTHO05D009951 1.5e-14 82.4 67 59.7
Eucgr.J02984 Eucalyptus grandis HOM05D007950 ORTHO05D009951 2.0e-14 82.0 60 60.0
Glyma.09G123700 Glycine max HOM05D007950 ORTHO05D009951 5.7e-14 80.5 70 58.6
Manes.11G045700 Manihot esculenta HOM05D007950 ORTHO05D009951 5.7e-14 80.5 68 57.4
ATR0980G014 Amborella trichopoda HOM05D007950 ORTHO05D009951 7.4e-14 80.1 70 52.9
Cc06_g09630 Coffea canephora HOM05D007950 ORTHO05D009951 2.8e-13 78.2 61 60.7
Medtr4g012610 Medicago truncatula HOM05D007950 ORTHO05D009951 4.8e-13 77.4 70 51.4
Glyma.08G206200 Glycine max HOM05D007950 ORTHO05D009951 4.1e-12 74.3 66 53.0
Lalb_Chr04g0262731 Lupinus albus HOM05D007950 ORTHO05D009951 4.1e-12 74.3 70 50.0
TPR.G24171 Trifolium pratense HOM05D007950 ORTHO05D009951 4.1e-12 74.3 66 51.5
Medtr4g012580 Medicago truncatula HOM05D007950 ORTHO05D009951 9.1e-12 73.2 66 50.0
Psat7g251240 Pisum sativum HOM05D007950 ORTHO05D009951 9.1e-12 73.2 70 47.1
CDE06G0019 Ceratophyllum demersum HOM05D007950 ORTHO05D009951 1.2e-11 72.8 67 49.3
Sc08g0007460 Simmondsia chinensis HOM05D007950 ORTHO05D009951 1.2e-11 72.8 67 50.7
Dinv36624 Davidia involucrata HOM05D007950 ORTHO05D009951 4.5e-11 70.9 68 54.4
Prupe.3G070100 Prunus persica HOM05D007950 ORTHO05D009951 5.9e-11 70.5 74 55.4
SalBow2G2396 Salvia bowleyana HOM05D007950 ORTHO05D009951 5.9e-11 70.5 53 54.7
arahy.Tifrunner.gnm1.ann1.6Z76EK Arachis hypogaea HOM05D007950 ORTHO05D009951 1.0e-10 69.7 66 53.0
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 1.0e-10 69.7 65 52.3
Phvul.010G150100 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 1.3e-10 69.3 70 47.1
FAN05G0591 Fragaria x ananassa HOM05D007950 ORTHO05D009951 2.2e-10 68.6 71 47.9
Lsat_1_v5_gn_5_103401 Lactuca sativa HOM05D007950 ORTHO05D009951 2.2e-10 68.6 69 50.7
Cc04_g03310 Coffea canephora HOM05D007950 ORTHO05D009951 3.8e-10 67.8 68 48.5
Migut.D01581 Erythranthe guttata HOM05D007950 ORTHO05D009951 5.0e-10 67.4 65 44.6
FAN14G2438 Fragaria x ananassa HOM05D007950 ORTHO05D009951 5.0e-10 67.4 71 47.9
TPR.G8534 Trifolium pratense HOM05D007950 ORTHO05D009951 2.5e-09 65.1 66 47.0
HanXRQChr09g0275201 Helianthus annuus HOM05D007950 ORTHO05D009951 5.5e-09 63.9 74 43.2
Sed0000041 Sechium edule HOM05D007950 ORTHO05D009951 3.6e-08 61.2 60 46.7
Thhalv10012203m.g Eutrema salsugineum HOM05D007950 ORTHO05D009951 1.8e-07 58.9 62 43.5
Medtr6g086730 Medicago truncatula HOM05D007950 ORTHO05D009951 4.0e-07 57.8 49 59.2
Os06g0686900 Oryza sativa ssp. japonica HOM05D018973 ORTHO05D009951 4.4e-06 54.3 67 44.8


User provided reference genes

Program Settings