Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 3.4e-101 371.7 191 100.0
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 1.1e-78 297.0 198 80.3
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 2.0e-69 266.2 198 74.2
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 4.3e-64 248.4 199 71.9
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 2.8e-63 245.7 197 72.6
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 8.1e-63 244.2 202 67.8
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 5.3e-62 241.5 197 69.5
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 2.2e-60 236.1 197 72.1
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 4.9e-60 235.0 194 66.5
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 7.1e-59 231.1 201 68.7
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.0e-57 227.3 202 67.8
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 1.0e-57 227.3 200 66.5
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.0e-57 227.3 196 68.4
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 1.3e-57 226.9 206 68.4
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 3.0e-57 225.7 225 61.8
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.8e-55 219.2 193 67.4
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 1.3e-52 210.3 204 65.2
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 4.9e-52 208.4 197 65.5
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.7e-50 202.6 196 62.8
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 6.0e-50 201.4 201 62.2
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 6.0e-50 201.4 201 62.2
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 6.0e-50 201.4 198 64.6
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 8.7e-49 197.6 195 63.1
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.3e-48 195.3 203 65.5
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 9.6e-48 194.1 199 60.8
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 1.3e-47 193.7 199 61.3
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 2.1e-47 193.0 199 62.8
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 2.8e-47 192.6 224 57.6
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 3.7e-47 192.2 158 68.4
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 8.2e-47 191.0 201 60.7
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.8e-46 189.9 198 58.6
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 2.4e-46 189.5 194 62.4
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 6.9e-46 188.0 194 62.9
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 7.6e-45 184.5 202 60.9
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.0e-44 184.1 210 57.1
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 2.2e-44 183.0 207 60.4
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 3.8e-44 182.2 211 58.3
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 5.0e-44 181.8 209 57.9
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 6.5e-44 181.4 202 60.9
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 6.5e-44 181.4 203 57.6
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 8.5e-44 181.0 202 60.4
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 8.5e-44 181.0 200 60.5
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 8.5e-44 181.0 213 57.7
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.1e-43 180.6 206 57.8
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.2e-43 179.1 207 58.0
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 3.2e-43 179.1 200 60.0
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 9.3e-43 177.6 201 59.7
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 2.7e-42 176.0 203 58.6
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 7.9e-42 174.5 191 59.7
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 1.0e-41 174.1 203 59.6
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.0e-41 174.1 201 58.7
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.0e-41 174.1 202 56.4
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.3e-41 173.7 215 54.9
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 1.8e-41 173.3 211 59.2
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.9e-41 172.2 207 57.0
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.9e-40 169.9 203 55.7
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 3.3e-40 169.1 203 56.7
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 1.6e-39 166.8 201 54.7
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 8.2e-39 164.5 206 54.9
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 3.1e-38 162.5 206 54.9
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.1e-38 162.5 209 56.0
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 4.1e-38 162.2 204 53.4
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.3e-38 161.8 208 55.8
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 5.3e-38 161.8 207 53.1
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.2e-37 160.6 210 52.4
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.5e-37 160.2 205 53.7
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 3.4e-37 159.1 205 54.6
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 1.0e-36 157.5 205 54.6
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.2e-36 156.4 218 53.7
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.2e-36 156.4 193 56.5
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 2.9e-36 156.0 202 55.0
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 5.0e-36 155.2 205 51.7
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 1.4e-35 153.7 202 53.0
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 3.2e-35 152.5 208 50.0
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.1e-34 149.8 207 48.8
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 7.9e-34 147.9 206 52.4
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.3e-33 146.4 197 52.8
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 3.0e-33 146.0 199 50.3
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 5.1e-33 145.2 208 49.0
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 5.1e-33 145.2 207 51.7
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 6.7e-33 144.8 132 67.4
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 8.8e-33 144.4 213 48.4
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 8.8e-33 144.4 217 51.6
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 2.0e-32 143.3 209 50.7
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 2.6e-32 142.9 196 53.6
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 4.4e-32 142.1 212 49.5
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.3e-31 140.6 203 47.8
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 2.2e-31 139.8 207 47.3
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 2.8e-31 139.4 207 46.9
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 2.8e-31 139.4 207 46.9
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 2.8e-31 139.4 194 53.1
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 2.8e-31 139.4 164 56.1
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 6.3e-31 138.3 202 47.0
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 6.3e-31 138.3 197 49.7
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 8.2e-31 137.9 207 48.3
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 8.2e-31 137.9 207 48.3
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 1.1e-30 137.5 202 47.0
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 1.4e-30 137.1 208 49.0
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 1.8e-30 136.7 200 45.5
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 3.1e-30 136.0 198 53.0
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 1.2e-29 134.0 148 58.1
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 1.5e-29 133.7 202 45.5
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 2.6e-29 132.9 142 62.0
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 3.4e-29 132.5 203 45.8
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 3.4e-29 132.5 203 45.8
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 3.4e-29 132.5 212 47.6
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 7.7e-29 131.3 203 45.8
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 1.0e-28 131.0 203 45.3
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.3e-28 130.6 217 46.1
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.9e-28 129.4 207 44.9
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 2.9e-28 129.4 202 47.0
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.2e-27 125.9 192 49.5
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 4.2e-27 125.6 115 65.2
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 7.2e-27 124.8 204 49.5
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 2.1e-26 123.2 212 45.8
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 4.7e-26 122.1 196 44.4
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.0e-25 120.9 177 46.3
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 1.8e-25 120.2 218 45.9
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 3.9e-25 119.0 197 43.7
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 6.7e-25 118.2 141 56.7
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.5e-24 117.1 208 46.2
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 3.3e-24 115.9 191 45.5
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 5.7e-24 115.2 171 45.0
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 5.7e-24 115.2 198 42.4
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 5.7e-24 115.2 166 49.4
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 9.7e-24 114.4 206 43.2
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 1.7e-23 113.6 211 42.7
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 4.8e-23 112.1 149 53.7
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-22 110.5 205 40.5
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.4e-22 109.8 194 45.4
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 2.4e-22 109.8 211 42.2
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.1e-22 109.4 137 53.3
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 7.0e-22 108.2 207 40.1
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 2.0e-21 106.7 185 44.3
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 4.5e-21 105.5 209 40.7
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 5.9e-21 105.1 192 44.8
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.3e-20 104.0 204 42.6
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 1.3e-20 104.0 205 42.0
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 2.9e-20 102.8 186 40.9
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 5.0e-20 102.1 213 43.2
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 6.5e-20 101.7 165 44.8
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 8.5e-20 101.3 196 41.3
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 1.9e-19 100.1 189 42.3
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 1.9e-19 100.1 189 42.3
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 5.5e-19 98.6 154 47.4
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 1.6e-18 97.1 200 42.0
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.6e-18 97.1 92 66.3
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.0e-17 94.4 198 40.4
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 1.2e-16 90.9 203 40.9
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.5e-16 90.5 203 39.4
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 2.6e-16 89.7 117 56.4
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.3e-16 89.4 199 42.2
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 4.4e-16 89.0 208 40.9
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 7.5e-16 88.2 128 52.3
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 1.3e-15 87.4 201 39.8
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 1.3e-15 87.4 164 42.1
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 3.7e-15 85.9 201 41.8
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 4.8e-15 85.5 103 56.3
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 8.2e-15 84.7 216 37.5
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 8.2e-15 84.7 131 48.9
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 1.8e-14 83.6 120 48.3
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 2.4e-14 83.2 121 47.1
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 4.1e-14 82.4 221 43.4
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 2.0e-13 80.1 140 44.3
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 2.7e-13 79.7 212 38.7
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 5.9e-13 78.6 205 37.1
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 7.7e-13 78.2 158 39.9
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 1.1e-11 74.3 162 43.8
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 1.1e-11 74.3 212 38.2
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 1.5e-11 73.9 191 37.2
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.2e-10 70.9 200 36.5
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 1.6e-10 70.5 202 34.7
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 1.0e-09 67.8 193 35.8
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 1.4e-09 67.4 88 51.1
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 1.2e-08 64.3 119 42.0
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 1.5e-08 63.9 183 35.5
HPP92_024624 Vanilla planifolia HOM05D003644 ORTHO05D004305 4.4e-08 62.4 197 38.1
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 7.5e-08 61.6 47 63.8
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.8e-07 59.7 59 57.6
Os01g0676900 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 3.7e-07 59.3 200 33.0


User provided reference genes

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