Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 2.0e-125 453.0 338 100.0
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 1.3e-92 344.0 338 79.9
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.7e-92 343.6 339 81.7
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.0e-92 342.8 339 82.3
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 1.1e-91 340.9 339 82.0
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 1.5e-91 340.5 339 82.3
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 2.8e-90 336.3 332 73.5
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 3.6e-90 335.9 333 79.3
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 8.9e-89 331.3 337 74.2
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 2.0e-88 330.1 331 73.4
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 7.6e-88 328.2 333 77.5
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.7e-87 327.0 339 75.5
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.2e-87 326.6 338 78.7
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.9e-87 325.5 339 77.0
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 1.9e-86 323.6 338 70.1
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 4.2e-86 322.4 324 80.2
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 9.3e-86 321.2 333 73.6
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.5e-85 319.3 340 77.9
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 3.5e-85 319.3 330 75.2
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 6.0e-85 318.5 332 79.5
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.3e-84 317.4 316 81.3
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.7e-84 317.0 316 81.3
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.7e-84 317.0 316 81.3
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 3.9e-84 315.8 328 72.6
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 3.9e-84 315.8 329 65.3
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 5.1e-84 315.5 335 73.7
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 5.1e-84 315.5 326 78.8
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 1.1e-83 314.3 326 79.8
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 1.5e-83 313.9 326 79.1
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.5e-83 313.2 308 85.1
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 9.6e-83 311.2 322 80.1
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 1.3e-82 310.8 323 73.1
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 1.6e-82 310.5 316 71.8
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 2.1e-82 310.1 318 72.0
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 4.8e-82 308.9 316 80.7
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 4.8e-82 308.9 311 82.3
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 6.2e-82 308.5 328 76.5
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 1.4e-81 307.4 312 75.6
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 1.4e-81 307.4 312 84.3
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 1.4e-81 307.4 326 64.1
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 4.0e-81 305.8 338 74.0
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 4.0e-81 305.8 332 70.8
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 5.3e-81 305.4 323 72.1
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 9.0e-81 304.7 319 78.4
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 9.0e-81 304.7 339 72.3
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 1.5e-80 303.9 358 60.3
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 1.5e-80 303.9 315 69.8
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 2.0e-80 303.5 319 77.7
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 2.0e-80 303.5 334 77.5
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 2.6e-80 303.1 332 66.9
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 3.4e-80 302.8 319 77.7
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 3.4e-80 302.8 323 72.1
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 3.4e-80 302.8 332 70.5
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 4.5e-80 302.4 312 83.0
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 5.8e-80 302.0 325 78.2
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 5.8e-80 302.0 323 70.9
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 9.9e-80 301.2 329 78.4
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 9.9e-80 301.2 328 69.8
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 2.2e-79 300.1 328 69.8
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 2.2e-79 300.1 328 69.2
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 2.2e-79 300.1 332 62.0
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 3.8e-79 299.3 319 70.5
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 3.8e-79 299.3 334 74.3
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 6.4e-79 298.5 318 80.2
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 6.4e-79 298.5 323 71.2
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 8.4e-79 298.1 342 67.8
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 8.4e-79 298.1 342 67.8
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 1.1e-78 297.7 319 71.8
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 1.1e-78 297.7 311 82.6
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 1.4e-78 297.4 338 74.3
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 1.4e-78 297.4 318 70.8
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 2.4e-78 296.6 312 72.1
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 2.4e-78 296.6 335 75.2
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 7.1e-78 295.0 328 69.2
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 7.1e-78 295.0 328 69.2
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 7.1e-78 295.0 341 73.0
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 9.3e-78 294.7 303 74.9
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 1.2e-77 294.3 327 72.2
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 2.1e-77 293.5 330 69.7
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 2.7e-77 293.1 319 69.0
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 3.5e-77 292.7 329 71.1
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 4.6e-77 292.4 325 69.5
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 1.0e-76 291.2 327 67.0
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 1.8e-76 290.4 318 71.1
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 3.0e-76 289.7 330 75.5
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 5.1e-76 288.9 334 73.7
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 2.5e-75 286.6 318 63.8
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 1.6e-74 283.9 328 64.6
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 2.1e-74 283.5 315 80.0
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 4.8e-74 282.3 325 68.9
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 8.1e-74 281.6 326 62.6
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 8.1e-74 281.6 326 62.6
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 1.1e-73 281.2 310 76.8
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 9.0e-73 278.1 316 76.9
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 2.6e-72 276.6 333 66.7
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 4.5e-72 275.8 310 77.1
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 5.8e-72 275.4 327 66.7
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 7.6e-72 275.0 327 67.9
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 4.9e-71 272.3 314 72.9
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 1.9e-70 270.4 249 75.1
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 9.3e-70 268.1 325 71.4
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.0e-68 264.6 320 76.2
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 3.0e-68 263.1 326 71.8
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 2.8e-66 256.5 302 67.5
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 3.7e-66 256.1 312 67.9
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 4.0e-65 252.7 327 58.1
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 2.6e-64 250.0 238 69.7
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 4.5e-64 249.2 168 80.4
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 1.0e-63 248.1 364 52.5
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 2.9e-63 246.5 293 69.3
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.2e-62 243.0 326 61.0
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 7.4e-59 231.9 322 57.5
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 4.1e-57 226.1 233 77.3
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 5.3e-57 225.7 218 62.8
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 2.6e-56 223.4 231 65.8
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 3.2e-54 216.5 296 56.4
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 3.6e-53 213.0 191 70.2
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 2.3e-52 210.3 189 71.4
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 1.9e-51 207.2 332 59.9
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 4.3e-51 206.1 189 60.8
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 5.7e-51 205.7 189 60.8
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 8.2e-50 201.8 314 61.1
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 3.1e-49 199.9 314 58.0
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 6.9e-49 198.7 310 63.2
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 5.9e-48 195.7 189 66.1
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 6.5e-47 192.2 308 66.9
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 1.6e-45 187.6 186 77.4
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.8e-44 184.1 308 51.6
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 3.0e-44 183.3 319 57.1
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 6.7e-44 182.2 149 68.5
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 8.2e-42 175.3 140 67.1
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 1.4e-41 174.5 212 86.8
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 5.0e-39 166.0 158 58.9
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 8.5e-39 165.2 185 64.3
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 8.5e-39 165.2 130 68.5
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-38 164.5 185 58.9
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 4.2e-38 162.9 148 60.1
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 4.2e-38 162.9 121 70.2
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 6.1e-37 159.1 308 57.1
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 8.0e-37 158.7 315 47.6
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 4.4e-35 152.9 308 45.1
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 9.7e-35 151.8 219 50.7
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 1.1e-33 148.3 149 59.7
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 4.1e-33 146.4 158 58.9
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.6e-32 143.7 207 74.4
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 1.0e-31 141.7 168 57.1
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 1.9e-30 137.5 152 59.9
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 3.0e-28 130.2 159 60.4
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 3.3e-27 126.7 153 67.3
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.2e-23 114.0 93 69.9
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.5e-23 112.1 93 68.8
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.5e-23 112.1 93 68.8
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.6e-21 107.8 183 69.9
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.2e-20 102.8 86 68.6
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 6.8e-20 102.4 147 43.5
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.4e-17 94.0 93 60.2
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 3.1e-17 93.6 96 54.2
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 2.0e-16 90.9 67 73.1
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.9e-15 87.0 92 57.6
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 2.8e-13 80.5 96 44.8
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 1.0e-12 78.6 170 34.7
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 8.9e-12 75.5 97 47.4
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 2.6e-11 73.9 102 42.2
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.8e-11 72.0 62 66.1
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 1.3e-10 71.6 98 45.9
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 4.1e-09 66.6 82 50.0
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.5e-06 58.2 163 52.8


User provided reference genes

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