Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G105300 Manihot esculenta HOM05D004235 ORTHO05D005157 0.0e+00 1662.1 842 100.0
Gohir.A05G028200 Gossypium hirsutum HOM05D004235 ORTHO05D005157 0.0e+00 1390.6 838 82.0
Gorai.009G030000 Gossypium raimondii HOM05D004235 ORTHO05D005157 0.0e+00 1390.6 838 82.0
Thecc.09G094700 Theobroma cacao HOM05D004235 ORTHO05D005157 0.0e+00 1390.6 838 81.5
Gohir.D05G029800 Gossypium hirsutum HOM05D004235 ORTHO05D005157 0.0e+00 1386.7 838 81.7
Duzib168G2142 Durio zibethinus HOM05D004235 ORTHO05D005157 0.0e+00 1379.8 838 81.5
Cfa003136 Carpinus fangiana HOM05D004235 ORTHO05D005157 0.0e+00 1378.2 844 81.3
GSVIVG01015250001 Vitis vinifera HOM05D004235 ORTHO05D005157 0.0e+00 1378.2 843 81.3
QL02p063521 Quercus lobata HOM05D004235 ORTHO05D005157 0.0e+00 1376.3 842 81.2
Lj7C671G7 Lonicera japonica HOM05D004235 ORTHO05D005157 0.0e+00 1375.5 839 80.9
Haze_25867 Corylus avellana HOM05D004235 ORTHO05D005157 0.0e+00 1370.9 843 80.8
Dinv36730 Davidia involucrata HOM05D004235 ORTHO05D005157 0.0e+00 1365.5 842 81.1
CiPaw.03G220000 Carya illinoinensis HOM05D004235 ORTHO05D005157 0.0e+00 1364.4 843 80.5
MD15G1202300 Malus domestica HOM05D004235 ORTHO05D005157 0.0e+00 1363.2 837 80.4
Prupe.7G214900 Prunus persica HOM05D004235 ORTHO05D005157 0.0e+00 1361.3 837 80.2
CANSAT56G3324 Cannabis sativa HOM05D004235 ORTHO05D005157 0.0e+00 1360.9 840 79.6
Glyma.05G223700 Glycine max HOM05D004235 ORTHO05D005157 0.0e+00 1357.8 841 79.4
TPR.G25478 Trifolium pratense HOM05D004235 ORTHO05D005157 0.0e+00 1354.7 838 80.1
Atru.chr7.1524 Acer truncatum HOM05D004235 ORTHO05D005157 0.0e+00 1351.3 853 80.1
TWI34G1426 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 0.0e+00 1348.2 837 80.4
Rhsim03G0234900 Rhododendron simsii HOM05D004235 ORTHO05D005157 0.0e+00 1347.0 843 78.9
VMungo0251G2139 Vigna mungo HOM05D004235 ORTHO05D005157 0.0e+00 1342.8 841 77.9
COL.COLO4_18249 Corchorus olitorius HOM05D004235 ORTHO05D005157 0.0e+00 1342.0 838 79.5
RcHm_v2.0_Chr2g0092561 Rosa chinensis HOM05D004235 ORTHO05D005157 0.0e+00 1340.9 839 78.4
Nitab4.5_0000540g0150 Nicotiana tabacum HOM05D004235 ORTHO05D005157 0.0e+00 1339.7 843 78.8
Nitab4.5_0003781g0020 Nicotiana tabacum HOM05D004235 ORTHO05D005157 0.0e+00 1338.6 843 78.4
PGSC0003DMG402000346 Solanum tuberosum HOM05D004235 ORTHO05D005157 0.0e+00 1338.6 843 78.9
FvH4_1g06790 Fragaria vesca HOM05D004235 ORTHO05D005157 0.0e+00 1338.2 837 78.1
FAN19G3193 Fragaria x ananassa HOM05D004235 ORTHO05D005157 0.0e+00 1337.8 837 78.0
CSS0042623 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 0.0e+00 1337.4 839 78.9
ClCG11G001880 Citrullus lanatus HOM05D004235 ORTHO05D005157 0.0e+00 1337.0 843 78.9
Lj4g0008017 Lotus japonicus HOM05D004235 ORTHO05D005157 0.0e+00 1336.6 842 78.7
FAN28G2658 Fragaria x ananassa HOM05D004235 ORTHO05D005157 0.0e+00 1335.9 837 78.0
CAN.G1241.9 Capsicum annuum HOM05D004235 ORTHO05D005157 0.0e+00 1335.1 843 78.4
Solyc12g008710.2 Solanum lycopersicum HOM05D004235 ORTHO05D005157 0.0e+00 1335.1 843 78.5
Sopen12g003640 Solanum pennellii HOM05D004235 ORTHO05D005157 0.0e+00 1335.1 843 78.5
Hma1.2p1_1074F.1_g254400 Hydrangea macrophylla HOM05D004235 ORTHO05D005157 0.0e+00 1333.5 838 78.9
Psat7g019200 Pisum sativum HOM05D004235 ORTHO05D005157 0.0e+00 1333.2 838 78.6
CsaV3_2G001610 Cucumis sativus L. HOM05D004235 ORTHO05D005157 0.0e+00 1330.9 840 78.5
FAN26G0912 Fragaria x ananassa HOM05D004235 ORTHO05D005157 0.0e+00 1324.7 845 76.9
FAN26G2547 Fragaria x ananassa HOM05D004235 ORTHO05D005157 0.0e+00 1323.9 845 77.0
FAN23G1406 Fragaria x ananassa HOM05D004235 ORTHO05D005157 0.0e+00 1322.8 837 77.3
Sed0001781 Sechium edule HOM05D004235 ORTHO05D005157 0.0e+00 1322.8 843 78.4
THA.LOC104817747 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 0.0e+00 1322.0 838 77.6
Nn8g38947 Nelumbo nucifera HOM05D004235 ORTHO05D005157 0.0e+00 1320.8 844 77.4
Cc06_g10940 Coffea canephora HOM05D004235 ORTHO05D005157 0.0e+00 1320.1 843 78.1
MELO3C004614.2 Cucumis melo HOM05D004235 ORTHO05D005157 0.0e+00 1314.3 821 79.3
Peaxi162Scf00498g00032 Petunia axillaris HOM05D004235 ORTHO05D005157 0.0e+00 1309.7 817 79.3
Carub.0008s1721 Capsella rubella HOM05D004235 ORTHO05D005157 0.0e+00 1308.9 838 76.7
THA.LOC104811734 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 0.0e+00 1307.4 837 76.9
TAR383G0914 Trochodendron aralioides HOM05D004235 ORTHO05D005157 0.0e+00 1303.1 843 76.7
AL8G32560 Arabidopsis lyrata HOM05D004235 ORTHO05D005157 0.0e+00 1301.6 838 76.4
PGR102G2758 Punica granatum HOM05D004235 ORTHO05D005157 0.0e+00 1300.4 843 75.7
AT5G56730 Arabidopsis thaliana HOM05D004235 ORTHO05D005157 0.0e+00 1296.6 838 75.9
Ciclev10010146m.g Citrus clementina HOM05D004235 ORTHO05D005157 0.0e+00 1296.6 843 76.5
BcaB08g36065 Brassica carinata HOM05D004235 ORTHO05D005157 0.0e+00 1295.8 838 75.9
CARHR270480 Cardamine hirsuta HOM05D004235 ORTHO05D005157 0.0e+00 1295.8 837 76.0
BcaC04g20058 Brassica carinata HOM05D004235 ORTHO05D005157 0.0e+00 1295.0 838 75.9
CSS0043888 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 0.0e+00 1294.3 843 77.0
Sp6g18480 Schrenkiella parvula HOM05D004235 ORTHO05D005157 0.0e+00 1292.3 838 75.9
Phvul.002G305500 Phaseolus vulgaris HOM05D004235 ORTHO05D005157 0.0e+00 1291.9 814 77.6
Migut.J00436 Erythranthe guttata HOM05D004235 ORTHO05D005157 0.0e+00 1291.6 842 75.4
BraA10t43498Z Brassica rapa HOM05D004235 ORTHO05D005157 0.0e+00 1291.2 839 75.7
BolC9t57680H Brassica oleracea HOM05D004235 ORTHO05D005157 0.0e+00 1290.4 839 75.8
C09p48300 Brassica napus HOM05D004235 ORTHO05D005157 0.0e+00 1288.5 839 75.7
HanXRQChr04g0112481 Helianthus annuus HOM05D004235 ORTHO05D005157 0.0e+00 1288.5 842 75.2
A10p14070 Brassica napus HOM05D004235 ORTHO05D005157 0.0e+00 1287.7 839 75.6
Eucgr.C03689 Eucalyptus grandis HOM05D004235 ORTHO05D005157 0.0e+00 1286.6 843 75.3
Aa31LG3G12550 Aethionema arabicum HOM05D004235 ORTHO05D005157 0.0e+00 1283.9 838 75.7
SGA_v2.0_scaffold62G21574 Striga asiatica HOM05D004235 ORTHO05D005157 0.0e+00 1283.1 861 73.6
PSO832G0536 Papaver somniferum HOM05D004235 ORTHO05D005157 0.0e+00 1282.3 843 74.4
PSO063G2511 Papaver somniferum HOM05D004235 ORTHO05D005157 0.0e+00 1278.5 843 74.3
Aqoxy7G01320 Aquilegia oxysepala HOM05D004235 ORTHO05D005157 0.0e+00 1269.2 843 73.3
Glyma.08G030800 Glycine max HOM05D004235 ORTHO05D005157 0.0e+00 1263.4 841 74.6
TWI63G1589 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 0.0e+00 1254.6 837 76.3
ATR0789G124 Amborella trichopoda HOM05D004235 ORTHO05D005157 0.0e+00 1250.3 810 74.6
arahy.Tifrunner.gnm1.ann1.00M5T5 Arachis hypogaea HOM05D004235 ORTHO05D005157 0.0e+00 1247.6 851 73.3
Medtr8g101950 Medicago truncatula HOM05D004235 ORTHO05D005157 0.0e+00 1246.5 838 75.3
arahy.Tifrunner.gnm1.ann1.VZDV7L Arachis hypogaea HOM05D004235 ORTHO05D005157 0.0e+00 1246.1 851 73.1
ECA236G4919 Erigeron canadensis HOM05D004235 ORTHO05D005157 0.0e+00 1245.7 836 73.0
Sc04g0004610 Simmondsia chinensis HOM05D004235 ORTHO05D005157 0.0e+00 1240.3 836 73.1
HPP92_009154 Vanilla planifolia HOM05D004235 ORTHO05D005157 0.0e+00 1240.3 845 72.2
unitig_26.g9162 Utricularia gibba HOM05D004235 ORTHO05D005157 0.0e+00 1229.9 840 72.5
Oeu052124.2 Olea europaea HOM05D004235 ORTHO05D005157 0.0e+00 1227.2 854 72.2
EL10Ac8g19244 Beta vulgaris HOM05D004235 ORTHO05D005157 0.0e+00 1223.0 864 70.6
Hund06688 Selenicereus undatus HOM05D004235 ORTHO05D005157 0.0e+00 1221.5 837 72.2
AUR62027475 Chenopodium quinoa HOM05D004235 ORTHO05D005157 0.0e+00 1221.1 837 71.3
DCAR_028630 Daucus carota HOM05D004235 ORTHO05D005157 0.0e+00 1216.4 844 71.7
vmacro06271 Vaccinium macrocarpon HOM05D004235 ORTHO05D005157 0.0e+00 1213.0 1018 63.6
Ca_17388_v3 Cicer arietinum L. HOM05D004235 ORTHO05D005157 0.0e+00 1211.8 838 73.6
Lsat_1_v5_gn_8_88100 Lactuca sativa HOM05D004235 ORTHO05D005157 0.0e+00 1196.4 842 71.5
Thhalv10012682m.g Eutrema salsugineum HOM05D004235 ORTHO05D005157 0.0e+00 1193.7 841 71.2
AUR62034005 Chenopodium quinoa HOM05D004235 ORTHO05D005157 0.0e+00 1177.9 797 72.3
Thecc.09G094600 Theobroma cacao HOM05D004235 ORTHO05D005157 0.0e+00 1171.0 835 71.9
Duzib168G1665 Durio zibethinus HOM05D004235 ORTHO05D005157 0.0e+00 1156.0 838 70.4
Thecc.09G094500 Theobroma cacao HOM05D004235 ORTHO05D005157 0.0e+00 1152.5 808 72.2
Gohir.D08G265400 Gossypium hirsutum HOM05D004235 ORTHO05D005157 0.0e+00 1144.8 836 68.7
Gorai.004G283400 Gossypium raimondii HOM05D004235 ORTHO05D005157 0.0e+00 1142.9 836 68.5
Duzib150G0514 Durio zibethinus HOM05D004235 ORTHO05D005157 0.0e+00 1142.5 831 69.6
Gohir.A08G244500 Gossypium hirsutum HOM05D004235 ORTHO05D005157 0.0e+00 1132.5 836 68.2
Zm00001eb162240 Zea mays HOM05D004235 ORTHO05D005157 0.0e+00 1119.4 784 70.7
Mapoly0007s0115 Marchantia polymorpha HOM05D004235 ORTHO05D005157 0.0e+00 1076.2 840 63.0
SMO268G0025 Selaginella moellendorffii HOM05D004235 ORTHO05D005157 2.2e-309 1065.4 836 61.2
Pp3c19_10200 Physcomitrium patens HOM05D004235 ORTHO05D005157 4.8e-301 1037.7 838 60.4
CSS0008185 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 8.5e-298 1026.9 738 71.8
Migut.J00437 Erythranthe guttata HOM05D004235 ORTHO05D005157 9.4e-297 1023.5 818 63.4
COL.COLO4_18247 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.3e-293 1013.1 843 61.0
Sc18g0001680 Simmondsia chinensis HOM05D004235 ORTHO05D005157 7.5e-286 987.3 819 60.0
Ah.09g230260 Amaranthus hybridus HOM05D004235 ORTHO05D005157 6.8e-279 964.1 807 59.1
COL.COLO4_18244 Corchorus olitorius HOM05D004235 ORTHO05D005157 5.7e-278 961.1 838 59.1
EL10Ac8g18336 Beta vulgaris HOM05D004235 ORTHO05D005157 2.8e-272 942.2 820 58.4
AUR62021351 Chenopodium quinoa HOM05D004235 ORTHO05D005157 4.4e-270 934.9 808 58.4
Sc18g0001660 Simmondsia chinensis HOM05D004235 ORTHO05D005157 5.4e-268 927.9 813 57.3
Hund09051 Selenicereus undatus HOM05D004235 ORTHO05D005157 1.7e-266 922.9 814 57.5
CBR_g39508 Chara braunii HOM05D004235 ORTHO05D005157 1.5e-262 909.8 806 55.1
AUR62033265 Chenopodium quinoa HOM05D004235 ORTHO05D005157 6.8e-247 857.8 725 59.9
COL.COLO4_18248 Corchorus olitorius HOM05D004235 ORTHO05D005157 5.8e-238 828.2 669 63.2
COL.COLO4_18245 Corchorus olitorius HOM05D004235 ORTHO05D005157 2.5e-220 769.6 844 50.2
Cpa.g.sc2319.2 Carica papaya HOM05D004235 ORTHO05D005157 2.2e-205 719.9 429 83.7
Cpa.g.sc78.62 Carica papaya HOM05D004235 ORTHO05D005157 4.2e-196 689.1 426 80.3
CSS0028903 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 2.2e-168 597.0 408 75.0
MCO05G244 Micromonas commoda HOM05D004235 ORTHO05D005157 6.4e-152 542.3 835 37.5
Lalb_Chr09g0331751 Lupinus albus HOM05D004235 ORTHO05D005157 2.4e-151 540.4 385 72.5
Lalb_Chr09g0331731 Lupinus albus HOM05D004235 ORTHO05D005157 2.0e-150 537.3 360 74.7
Os01g0558850 Oryza sativa ssp. japonica HOM05D004235 ORTHO05D005157 2.4e-135 487.3 346 69.7
SalBow6G3097 Salvia bowleyana HOM05D004235 ORTHO05D005157 2.1e-107 394.4 253 77.9
SEGI_18611 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 4.8e-107 393.3 314 56.7
Pp3c22_21190 Physcomitrium patens HOM05D004235 ORTHO05D005157 4.0e-106 390.2 506 44.3
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.2e-96 357.8 228 78.5
SEGI_16235 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 9.3e-95 352.4 232 69.4
RcHm_v2.0_Chr2g0091881 Rosa chinensis HOM05D004235 ORTHO05D005157 1.5e-84 318.5 277 62.8
SEGI_08113 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 1.3e-83 315.5 224 70.1
Aa31LG3G12660 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.3e-80 305.4 231 68.4
CSS0031019 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.5e-63 248.8 159 74.8
SGA_v2.0_scaffold354G49755 Striga asiatica HOM05D004235 ORTHO05D005157 1.5e-60 238.8 175 64.6
SGA_v2.0_scaffold21G09333 Striga asiatica HOM05D004235 ORTHO05D005157 2.2e-51 208.4 181 58.0
Aa31LG3G12570 Aethionema arabicum HOM05D004235 ORTHO05D005157 4.5e-49 200.7 203 53.7
PGSC0003DMG400037643 Solanum tuberosum HOM05D004235 ORTHO05D005157 7.5e-44 183.3 496 29.2
SEGI_40851 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 2.9e-43 181.4 133 60.2
C02p28510 Brassica napus HOM05D004235 ORTHO05D005157 3.3e-39 167.9 108 71.3
BolC2t08892H Brassica oleracea HOM05D004235 ORTHO05D005157 3.3e-39 167.9 108 71.3
MBI12_g34172_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 9.2e-34 149.8 127 60.6
SEGI_09422 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 8.6e-32 143.3 115 61.7
BcaC03g15257 Brassica carinata HOM05D004235 ORTHO05D005157 1.1e-29 136.3 86 70.9
HanXRQChr07g0193421 Helianthus annuus HOM05D004235 ORTHO05D005157 2.6e-28 131.7 96 71.9
MBI12_g07780_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 4.9e-27 127.5 93 63.4
Cre16.g647500 Chlamydomonas reinhardtii HOM05D004235 ORTHO05D005157 1.9e-23 115.5 170 35.3
Aa31LG3G12610 Aethionema arabicum HOM05D004235 ORTHO05D005157 5.6e-23 114.0 68 75.0
RcHm_v2.0_Chr2g0091891 Rosa chinensis HOM05D004235 ORTHO05D005157 6.4e-19 100.5 53 88.7
Lalb_Chr09g0331741 Lupinus albus HOM05D004235 ORTHO05D005157 8.4e-19 100.1 55 81.8
Oeu052121.2 Olea europaea HOM05D000101 ORTHO05D000089 5.1e-16 90.9 92 53.3
MBI14_g38886_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 1.1e-15 89.7 65 61.5
SEGI_38347 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 5.2e-13 80.9 60 65.0
MBI14_g45694_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 1.2e-12 79.7 47 76.6
MBI14_g11330_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 1.5e-12 79.3 47 74.5
SEGI_21772 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 4.2e-10 71.2 89 46.1
RcHm_v2.0_Chr6g0274801 Rosa chinensis HOM05D004235 ORTHO05D026109 6.0e-09 67.4 51 58.8
CSS0038548 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 3.0e-08 65.1 40 77.5
PGSC0003DMG400043958 Solanum tuberosum HOM05D004235 ORTHO05D005157 6.6e-08 63.9 135 31.9
HanXRQChr04g0119021 Helianthus annuus HOM05D003632 ORTHO05D005497 3.3e-07 61.6 388 22.7
ECA236G2986 Erigeron canadensis HOM05D003632 ORTHO05D005497 2.8e-06 58.5 388 20.9
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 2.8e-06 58.5 89 43.8
unitig_0.g345 Utricularia gibba HOM05D003632 ORTHO05D005497 3.6e-06 58.2 71 36.6


User provided reference genes

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