Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 3.9e-268 927.5 465 100.0
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 1.7e-207 726.1 465 76.8
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 1.2e-203 713.4 461 74.8
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 1.5e-198 696.4 461 73.5
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 4.7e-197 691.4 513 68.4
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 8.8e-196 687.2 461 72.7
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 3.4e-195 685.3 462 71.2
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 1.1e-193 680.2 464 70.9
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 3.1e-193 678.7 463 70.2
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 2.9e-191 672.2 461 72.5
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 5.2e-188 661.4 463 70.2
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 1.3e-186 656.8 463 69.5
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 1.3e-186 656.8 463 71.3
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 3.7e-186 655.2 461 71.1
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 1.4e-185 653.3 463 69.5
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 1.6e-184 649.8 462 68.0
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 1.3e-183 646.7 463 69.1
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 6.6e-183 644.4 460 69.1
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 4.3e-182 641.7 463 69.8
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.0e-180 637.1 463 67.2
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 6.8e-180 634.4 462 66.7
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 8.9e-180 634.0 463 68.5
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 3.4e-179 632.1 461 67.0
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 4.4e-179 631.7 467 68.1
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 4.4e-179 631.7 467 68.1
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 2.2e-178 629.4 463 66.7
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 2.9e-178 629.0 467 67.9
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.9e-178 628.2 459 66.7
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 4.9e-178 628.2 464 66.2
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 6.4e-178 627.9 461 67.5
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 1.4e-177 626.7 463 68.3
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.9e-177 626.3 462 66.0
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 4.1e-177 625.2 463 66.3
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 4.1e-177 625.2 461 66.8
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 1.6e-173 613.2 464 65.7
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 2.1e-173 612.8 461 64.9
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 6.2e-173 611.3 463 62.4
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 8.1e-173 610.9 462 65.2
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 1.8e-172 609.8 461 64.4
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 5.2e-172 608.2 464 65.1
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 1.2e-171 607.1 465 64.9
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 5.8e-171 604.7 462 64.9
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 7.5e-171 604.4 461 61.0
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 4.1e-169 598.6 463 64.4
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 3.9e-167 592.0 463 62.6
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 6.6e-167 591.3 462 62.8
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 8.1e-165 584.3 499 60.1
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.4e-163 578.6 429 65.3
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 9.9e-163 577.4 429 65.3
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 4.9e-162 575.1 462 59.5
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 1.4e-161 573.5 466 60.5
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 9.2e-161 570.9 464 61.6
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 9.2e-161 570.9 462 62.3
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 2.1e-160 569.7 461 58.8
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 6.6e-159 564.7 461 61.0
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 1.1e-158 563.9 463 60.7
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 1.5e-158 563.5 463 61.1
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 8.1e-157 557.8 451 61.0
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 1.8e-156 556.6 462 58.0
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 8.9e-156 554.3 464 58.8
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 1.2e-155 553.9 464 58.6
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 1.5e-155 553.5 463 59.2
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 7.6e-155 551.2 465 59.6
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 1.3e-154 550.4 463 60.0
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 1.7e-154 550.1 464 58.6
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 1.7e-154 550.1 461 59.0
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 3.8e-154 548.9 465 58.7
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 6.4e-154 548.1 465 58.7
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 8.4e-154 547.7 463 59.2
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 1.1e-153 547.4 466 58.6
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 2.4e-153 546.2 463 59.2
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 2.4e-153 546.2 461 59.7
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 7.1e-153 544.7 464 58.0
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 9.3e-153 544.3 461 58.4
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 2.7e-152 542.7 467 57.8
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 3.5e-152 542.3 461 59.4
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 6.0e-152 541.6 463 57.9
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 1.0e-151 540.8 462 58.2
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 1.3e-151 540.4 463 58.3
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 5.1e-151 538.5 462 58.2
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 9.6e-150 534.3 461 59.4
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 3.6e-149 532.3 465 57.2
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 1.1e-148 530.8 465 56.6
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 4.0e-148 528.9 468 57.1
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 1.7e-146 523.5 465 56.6
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 2.9e-146 522.7 434 59.4
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 1.9e-145 520.0 421 61.0
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 3.2e-145 519.2 465 54.2
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 1.6e-144 516.9 469 55.0
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 6.0e-144 515.0 465 53.8
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 6.2e-141 505.0 465 54.8
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.8e-140 503.4 465 54.4
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 2.9e-138 496.1 423 57.2
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 3.8e-138 495.7 452 54.4
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 1.1e-137 494.2 432 60.6
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.4e-131 472.6 465 52.5
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 3.4e-131 472.6 437 53.5
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 2.9e-130 469.5 464 52.2
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 1.0e-127 461.1 456 51.1
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 1.3e-127 460.7 493 47.3
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 2.5e-126 456.4 449 52.6
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 1.7e-122 443.7 491 47.3
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 2.3e-119 433.3 462 46.8
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 1.1e-113 414.5 465 47.1
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 2.4e-100 370.2 424 42.0
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 2.2e-98 363.6 296 58.8
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 3.2e-97 359.8 369 51.2
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 3.2e-97 359.8 369 51.2
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 2.6e-94 350.1 468 40.6
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 2.6e-94 350.1 465 46.5
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 2.2e-93 347.1 277 61.0
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 5.2e-87 325.9 491 38.1
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 1.8e-84 317.4 530 36.6
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 5.4e-68 262.7 511 33.3
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 2.7e-67 260.4 323 46.1
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 6.2e-64 249.2 505 31.7
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 3.5e-51 206.8 193 55.4
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 3.9e-50 203.4 357 35.0
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 2.3e-47 194.1 363 35.3
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 2.7e-43 180.6 162 51.9
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 1.0e-42 178.7 162 51.2
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 8.1e-40 169.1 117 67.5
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 4.0e-39 166.8 125 65.6
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 5.8e-38 162.9 124 59.7
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 5.8e-38 162.9 124 59.7
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.4e-36 157.5 121 58.7
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 2.7e-35 154.1 345 29.3
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 8.7e-34 149.1 232 38.4
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 1.2e-30 138.7 217 38.7
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 2.6e-30 137.5 105 58.1
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 6.0e-27 126.3 438 23.7
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 7.4e-25 119.4 275 30.2
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 2.4e-20 104.4 121 44.6
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 2.3e-18 97.8 163 35.0
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 5.3e-15 86.7 72 58.3
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 1.0e-13 82.4 88 46.6
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 1.7e-13 81.6 88 46.6
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 1.9e-12 78.2 73 49.3
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 2.3e-10 71.2 38 76.3
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.5e-09 68.6 39 71.8
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 2.6e-06 57.8 40 65.0


User provided reference genes

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