Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 3.7e-73 278.9 235 100.0
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 1.9e-21 107.1 195 50.8
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 1.0e-19 101.3 201 48.8
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.4e-19 100.9 204 42.2
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.2e-18 97.8 207 40.6
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 2.6e-18 96.7 201 40.8
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 4.4e-18 95.9 217 41.9
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.3e-17 94.4 197 37.1
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.3e-17 94.4 203 48.3
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.9e-17 92.4 197 37.6
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 2.4e-16 90.1 210 50.5
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.4e-16 90.1 197 35.0
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.6e-15 87.4 198 36.9
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.7e-14 84.0 220 37.3
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 6.6e-14 82.0 218 42.7
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 8.6e-14 81.6 215 43.7
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.9e-13 80.5 184 39.1
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.9e-13 80.5 184 39.1
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.9e-13 80.5 215 35.8
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 3.3e-13 79.7 83 65.1
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.2e-12 77.8 105 57.1
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 4.7e-12 75.9 200 60.0
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 4.7e-12 75.9 208 43.8
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.4e-11 74.3 201 60.2
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 1.8e-11 73.9 79 65.8
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 8.9e-11 71.6 79 65.8
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 1.5e-10 70.9 79 65.8
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 1.5e-10 70.9 130 45.4
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.0e-10 70.5 75 65.3
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 3.4e-10 69.7 78 62.8
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 3.4e-10 69.7 76 67.1
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 4.4e-10 69.3 85 64.7
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 4.4e-10 69.3 75 62.7
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 4.4e-10 69.3 205 36.1
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 5.8e-10 68.9 119 60.5
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 5.8e-10 68.9 74 67.6
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 7.5e-10 68.6 80 67.5
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 7.5e-10 68.6 79 63.3
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 7.5e-10 68.6 79 65.8
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 7.5e-10 68.6 75 69.3
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 9.8e-10 68.2 75 68.0
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 9.8e-10 68.2 184 34.2
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 9.8e-10 68.2 184 34.2
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 9.8e-10 68.2 77 64.9
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 1.3e-09 67.8 92 62.0
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 1.3e-09 67.8 80 62.5
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.7e-09 67.4 88 60.2
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 2.2e-09 67.0 76 64.5
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 2.9e-09 66.6 76 65.8
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 2.9e-09 66.6 204 34.8
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 3.7e-09 66.2 79 65.8
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 3.7e-09 66.2 93 59.1
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 3.7e-09 66.2 77 63.6
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 3.7e-09 66.2 93 57.0
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 4.9e-09 65.9 203 35.5
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 4.9e-09 65.9 75 65.3
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 4.9e-09 65.9 178 33.7
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 6.4e-09 65.5 87 57.5
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 6.4e-09 65.5 94 53.2
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 8.3e-09 65.1 80 62.5
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 1.1e-08 64.7 83 60.2
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.4e-08 64.3 77 62.3
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.4e-08 64.3 77 62.3
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 1.4e-08 64.3 77 62.3
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 1.9e-08 63.9 74 62.2
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.4e-08 63.5 75 65.3
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.4e-08 63.5 71 64.8
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.4e-08 63.5 82 61.0
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 2.4e-08 63.5 77 63.6
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 2.4e-08 63.5 73 65.8
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 4.1e-08 62.8 81 58.0
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 4.1e-08 62.8 79 62.0
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 4.1e-08 62.8 78 59.0
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 5.4e-08 62.4 71 64.8
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 5.4e-08 62.4 74 64.9
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 9.2e-08 61.6 77 62.3
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.2e-07 61.2 87 59.8
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.6e-07 60.8 79 62.0
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 1.6e-07 60.8 78 60.3
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.6e-07 60.8 74 62.2
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 2.0e-07 60.5 79 59.5
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 2.7e-07 60.1 102 35.3
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 2.7e-07 60.1 179 30.2
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.7e-07 60.1 80 61.2
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 3.5e-07 59.7 81 56.8
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 3.5e-07 59.7 83 57.8
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 4.6e-07 59.3 78 60.3
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 4.6e-07 59.3 74 63.5
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 6.0e-07 58.9 47 59.6
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 6.0e-07 58.9 74 63.5
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 7.8e-07 58.5 71 59.2
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 7.8e-07 58.5 71 64.8
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 7.8e-07 58.5 43 62.8
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 7.8e-07 58.5 172 37.2
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.0e-06 58.2 80 58.8
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.3e-06 57.8 77 41.6
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 1.3e-06 57.8 49 51.0
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.3e-06 57.8 48 58.3
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.3e-06 57.8 81 59.3
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 2.3e-06 57.0 78 56.4
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 3.9e-06 56.2 72 65.3
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.9e-06 56.2 47 51.1
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 5.0e-06 55.8 71 63.4
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 6.6e-06 55.5 88 54.5
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 6.6e-06 55.5 81 49.4
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 8.6e-06 55.1 78 57.7


User provided reference genes

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