Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.7e-280 968.8 517 100.0
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 7.8e-209 730.7 474 77.0
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 8.6e-208 727.2 452 79.2
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 3.3e-207 725.3 457 78.1
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.8e-206 722.2 440 79.3
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 3.6e-206 721.8 449 78.6
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 2.3e-205 719.2 488 73.2
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 4.0e-205 718.4 457 77.7
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.2e-204 716.8 451 78.0
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 1.3e-203 713.4 449 75.9
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 4.9e-203 711.4 485 72.8
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 2.4e-202 709.1 428 79.2
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 7.0e-202 707.6 436 77.5
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 3.5e-201 705.3 459 74.9
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 1.0e-200 703.7 435 78.4
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 1.7e-200 703.0 484 72.1
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 1.7e-200 703.0 473 74.0
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 6.6e-200 701.0 438 78.3
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 8.6e-200 700.7 461 75.7
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 1.1e-199 700.3 426 79.1
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 4.3e-199 698.4 436 77.8
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 7.3e-199 697.6 453 75.1
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 7.3e-199 697.6 471 72.8
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 9.5e-199 697.2 424 78.1
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 9.5e-199 697.2 471 74.9
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.2e-198 696.8 487 71.3
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 2.1e-198 696.0 474 71.9
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 2.1e-198 696.0 474 72.8
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 3.6e-198 695.3 447 76.1
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 4.7e-198 694.9 468 72.4
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 1.4e-197 693.3 428 77.6
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 1.8e-197 693.0 462 73.6
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 4.0e-197 691.8 474 71.5
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 6.8e-197 691.0 467 73.4
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 8.9e-197 690.6 464 72.8
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 2.6e-196 689.1 485 71.8
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 3.4e-196 688.7 447 74.9
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 1.7e-195 686.4 491 69.0
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 2.2e-195 686.0 467 73.7
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 6.4e-195 684.5 428 76.6
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 1.9e-194 682.9 470 71.9
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 4.1e-194 681.8 438 76.3
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 2.0e-193 679.5 452 73.9
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.0e-192 677.2 455 73.2
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 1.3e-192 676.8 449 74.2
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 3.9e-192 675.2 431 77.3
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.5e-191 673.3 458 73.1
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.9e-191 672.9 442 78.5
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 3.3e-191 672.2 426 76.5
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 4.3e-191 671.8 458 72.9
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 2.1e-190 669.5 436 76.1
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 8.1e-190 667.5 472 70.6
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.1e-189 667.2 458 72.5
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 1.1e-189 667.2 479 69.1
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 1.4e-189 666.8 478 69.9
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 1.4e-189 666.8 478 69.9
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 1.8e-189 666.4 479 69.3
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 3.1e-189 665.6 479 69.1
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 4.0e-189 665.2 439 73.6
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 8.9e-189 664.1 461 71.6
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 8.9e-189 664.1 462 71.2
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 2.0e-188 662.9 472 70.3
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 2.0e-188 662.9 440 73.6
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 2.0e-188 662.9 440 73.6
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 2.6e-188 662.5 431 74.5
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 2.6e-188 662.5 395 79.7
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 3.4e-188 662.1 480 68.5
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 4.4e-188 661.8 436 74.5
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 5.8e-188 661.4 424 74.5
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 5.8e-188 661.4 481 68.4
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 7.5e-188 661.0 478 68.6
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 7.5e-188 661.0 462 69.3
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 9.9e-188 660.6 462 70.8
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 1.7e-187 659.8 441 73.5
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 1.7e-187 659.8 441 73.5
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.7e-187 659.8 484 66.5
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 2.2e-187 659.4 434 74.4
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 2.2e-187 659.4 434 74.4
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 2.2e-187 659.4 434 74.4
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 2.9e-187 659.1 434 73.3
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 2.9e-187 659.1 424 74.5
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 1.9e-186 656.4 428 75.2
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 2.4e-186 656.0 468 70.3
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 3.2e-186 655.6 456 70.4
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 5.4e-186 654.8 440 70.9
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 6.0e-185 651.4 422 74.2
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 6.0e-185 651.4 405 79.5
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 5.1e-184 648.3 453 68.7
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 9.5e-183 644.0 482 66.2
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 9.5e-183 644.0 446 70.6
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 2.1e-182 642.9 486 66.5
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 2.8e-182 642.5 470 67.7
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.4e-181 640.2 493 64.7
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 1.8e-181 639.8 536 62.1
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 2.4e-181 639.4 432 74.1
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.8e-180 634.8 472 68.6
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.9e-179 632.5 467 68.7
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.8e-179 632.1 472 68.4
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 2.1e-177 626.3 512 64.3
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 7.8e-177 624.4 480 67.9
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.3e-176 622.9 514 63.8
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.6e-176 621.3 479 67.0
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 7.3e-175 617.8 468 68.6
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.8e-173 613.2 418 70.6
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 4.6e-169 598.6 418 68.4
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 1.0e-168 597.4 439 68.6
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 1.7e-168 596.7 447 69.1
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 5.6e-167 591.7 524 61.1
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 1.1e-165 587.4 445 68.8
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 1.8e-165 586.6 408 72.5
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 5.3e-165 585.1 357 77.6
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 9.0e-165 584.3 419 64.9
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 2.0e-164 583.2 446 65.0
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 2.2e-163 579.7 490 62.9
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 2.4e-162 576.2 504 61.3
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 1.6e-161 573.5 431 61.5
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 2.3e-160 569.7 455 64.2
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 1.9e-159 566.6 372 71.8
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 4.8e-158 562.0 394 71.3
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.1e-157 560.8 536 58.2
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 2.0e-156 556.6 435 63.4
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 9.9e-156 554.3 473 63.4
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 2.2e-155 553.1 458 60.3
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.2e-155 553.1 391 70.8
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.5e-153 545.8 434 59.9
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 1.3e-152 543.9 347 76.7
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 3.3e-151 539.3 428 61.0
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 4.3e-151 538.9 418 64.8
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 1.3e-150 537.3 347 76.9
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 2.8e-150 536.2 424 62.7
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.1e-149 534.3 426 63.1
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 2.0e-148 530.0 342 75.7
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 2.2e-147 526.6 335 77.9
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 1.9e-146 523.5 488 58.4
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 8.7e-144 514.6 353 70.5
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 5.3e-141 505.4 362 70.2
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.1e-137 493.4 316 75.6
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.7e-137 493.0 428 61.0
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 8.8e-136 488.0 335 69.3
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 5.7e-135 485.3 430 61.6
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 9.7e-135 484.6 365 67.9
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 8.2e-134 481.5 468 57.3
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 2.6e-132 476.5 404 58.9
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 3.8e-123 446.0 314 71.7
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 6.5e-123 445.3 349 65.6
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.6e-121 439.5 347 61.7
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.3e-120 436.8 446 55.8
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 5.2e-112 409.1 280 72.5
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 2.2e-102 377.1 210 84.3
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 1.1e-90 338.2 434 43.8
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 3.9e-75 286.6 276 57.6
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 7.3e-74 282.3 258 59.3
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 3.7e-70 270.0 211 69.7
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 5.4e-69 266.2 242 59.9
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 3.5e-68 263.5 154 83.1
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 1.8e-64 251.1 148 77.0
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 6.2e-57 226.1 193 57.0
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 9.0e-56 222.2 137 81.8
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 3.2e-53 213.8 166 57.2
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 1.6e-52 211.5 392 33.4
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.3e-51 207.6 144 69.4
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.1e-48 198.7 486 31.3
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.5e-34 151.8 103 68.0
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 6.1e-20 103.2 49 93.9
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 1.5e-18 98.6 51 86.3
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 4.3e-18 97.1 49 85.7
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 4.1e-16 90.5 159 33.3
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 5.9e-15 86.7 145 42.1
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 7.2e-13 79.7 292 26.0
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 1.1e-10 72.4 63 49.2
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 1.5e-07 62.0 40 72.5
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 3.5e-07 60.8 40 72.5


User provided reference genes

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