Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 8.5e-106 387.1 209 100.0
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 2.4e-84 315.8 209 81.3
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 4.1e-84 315.1 209 80.9
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 2.7e-83 312.4 209 78.5
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 5.9e-83 311.2 209 77.5
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 7.7e-83 310.8 208 77.4
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 1.1e-81 307.0 211 78.2
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 1.5e-81 306.6 209 78.9
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 1.9e-81 306.2 209 74.6
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 3.3e-81 305.4 209 78.9
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 3.3e-81 305.4 211 77.7
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 5.5e-81 304.7 209 76.1
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 3.6e-80 302.0 209 78.5
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 6.1e-80 301.2 209 78.5
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 1.2e-78 297.0 209 77.0
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 2.0e-78 296.2 210 76.2
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 4.4e-78 295.0 207 75.4
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 7.5e-78 294.3 208 75.0
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 9.8e-78 293.9 209 75.6
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 9.8e-78 293.9 207 76.3
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 3.7e-77 292.0 206 74.8
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 1.4e-76 290.0 207 74.4
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 1.8e-76 289.7 212 73.6
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.8e-76 289.7 200 78.0
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 3.1e-76 288.9 207 74.4
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 5.4e-76 288.1 209 73.7
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 7.0e-76 287.7 209 72.2
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 1.2e-75 287.0 203 74.9
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 1.2e-75 287.0 206 73.8
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 1.2e-75 287.0 212 71.7
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 8.6e-74 280.8 210 70.0
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.1e-73 280.4 209 69.4
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 1.5e-73 280.0 212 72.2
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 1.5e-73 280.0 210 70.5
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 2.8e-72 275.8 211 70.6
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 1.0e-71 273.9 209 71.3
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 1.0e-71 273.9 207 70.0
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 1.8e-71 273.1 211 72.0
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 2.3e-71 272.7 209 68.4
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 4.0e-71 271.9 209 67.9
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 6.8e-71 271.2 209 70.3
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 1.2e-70 270.4 209 68.9
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 3.7e-69 265.4 207 67.6
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 2.4e-68 262.7 181 75.7
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 5.4e-68 261.5 209 68.9
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 9.2e-68 260.8 210 66.7
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 1.2e-67 260.4 208 65.9
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 1.1e-65 253.8 205 65.9
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 2.5e-65 252.7 207 67.6
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 5.6e-65 251.5 209 63.6
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 2.1e-64 249.6 198 68.7
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 4.0e-63 245.4 207 64.7
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 2.6e-62 242.7 169 73.4
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 2.9e-61 239.2 159 78.6
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 4.1e-60 235.3 207 65.2
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 3.5e-59 232.3 209 61.2
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 1.1e-57 227.3 209 61.2
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 1.1e-55 220.7 209 61.2
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 4.0e-55 218.8 207 61.8
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.8e-47 193.4 184 56.5
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 1.3e-45 187.2 217 53.5
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 1.7e-45 186.8 204 51.5
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 1.9e-44 183.3 203 50.7
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 1.8e-39 166.8 106 78.3
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 1.5e-38 163.7 106 75.5
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 6.4e-37 158.3 209 45.5
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 2.0e-30 136.7 106 64.2
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 5.1e-26 122.1 137 51.8
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 5.6e-25 118.6 207 38.6
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.6e-24 117.1 112 57.1
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 4.8e-24 115.5 103 59.2
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 1.3e-21 107.5 117 41.9
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 1.4e-20 104.0 84 61.9
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 1.4e-15 87.4 178 34.3
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 9.3e-12 74.7 187 30.5
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.6e-11 73.9 54 66.7
SEGI_14451 Sequoiadendron giganteum HOM05D003033 ORTHO05D003475 1.5e-09 67.4 190 30.0
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 2.2e-08 63.5 165 35.2
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 2.8e-08 63.2 121 36.4


User provided reference genes

Program Settings