Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 1.0e-48 196.4 98 100.0
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 1.5e-33 146.0 98 76.5
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 2.8e-27 125.2 86 70.9
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 4.5e-25 117.9 103 63.1
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 3.8e-24 114.8 101 62.4
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 6.5e-24 114.0 100 64.0
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 2.5e-23 112.1 98 62.2
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 7.2e-23 110.5 98 61.2
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 7.2e-23 110.5 99 58.6
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 9.4e-23 110.2 100 58.0
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 9.4e-23 110.2 102 59.8
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 1.0e-21 106.7 92 62.0
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 2.3e-21 105.5 102 57.8
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 3.0e-21 105.1 102 57.8
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 4.0e-21 104.8 101 56.4
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 5.2e-21 104.4 98 60.2
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 6.7e-21 104.0 69 72.5
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 1.5e-20 102.8 98 60.2
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 2.0e-20 102.4 106 55.7
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 2.0e-20 102.4 102 57.8
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 2.0e-20 102.4 83 67.5
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 4.4e-20 101.3 98 57.1
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 6.3e-19 97.4 105 53.3
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 8.2e-19 97.1 85 58.8
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 7.0e-18 94.0 66 69.7
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 7.0e-18 94.0 103 54.4
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 9.1e-18 93.6 154 39.6
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 9.1e-18 93.6 98 52.0
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 1.6e-17 92.8 106 52.8
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 2.6e-17 92.0 58 74.1
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 3.5e-17 91.7 66 68.2
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 3.5e-17 91.7 101 51.5
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 4.5e-17 91.3 84 59.5
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 4.5e-17 91.3 96 56.2
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.5e-17 91.3 107 47.7
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 4.5e-17 91.3 70 61.4
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 5.9e-17 90.9 101 50.5
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.0e-16 90.1 106 48.1
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.0e-16 90.1 106 48.1
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 1.0e-16 90.1 98 53.1
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 1.3e-16 89.7 102 51.0
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 1.3e-16 89.7 64 65.6
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 1.7e-16 89.4 105 51.4
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 1.7e-16 89.4 107 46.7
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.7e-16 89.4 107 46.7
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 2.2e-16 89.0 105 50.5
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 3.8e-16 88.2 106 47.2
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 5.0e-16 87.8 66 63.6
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 5.0e-16 87.8 79 55.7
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 5.0e-16 87.8 80 57.5
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 8.5e-16 87.0 72 61.1
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 1.1e-15 86.7 83 55.4
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 1.9e-15 85.9 96 50.0
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 2.5e-15 85.5 103 49.5
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 3.2e-15 85.1 75 58.7
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 3.2e-15 85.1 104 51.9
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 4.2e-15 84.7 106 50.0
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 4.2e-15 84.7 106 50.0
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 4.2e-15 84.7 58 69.0
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 5.5e-15 84.3 96 49.0
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 9.4e-15 83.6 98 50.0
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 1.2e-14 83.2 72 56.9
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 2.1e-14 82.4 57 68.4
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 2.7e-14 82.0 67 65.7
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 4.7e-14 81.3 74 59.5
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 1.4e-13 79.7 59 64.4
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 1.8e-13 79.3 60 68.3
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 1.8e-13 79.3 60 68.3
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 2.3e-13 79.0 103 45.6
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 4.0e-13 78.2 60 66.7
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 4.0e-13 78.2 60 66.7
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 6.8e-13 77.4 57 68.4
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 2.0e-12 75.9 59 61.0
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 2.0e-12 75.9 58 63.8
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 3.4e-12 75.1 57 57.9
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 5.7e-12 74.3 43 81.4
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 7.5e-12 73.9 46 73.9
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 7.5e-12 73.9 87 47.1
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 1.3e-11 73.2 71 54.9
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 1.7e-11 72.8 78 50.0
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.8e-11 72.0 107 43.0
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 3.7e-11 71.6 55 60.0
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 4.8e-11 71.2 63 60.3
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 6.3e-11 70.9 86 43.0
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 1.8e-10 69.3 48 64.6
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 5.4e-10 67.8 53 58.5
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 5.4e-10 67.8 53 58.5
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 5.4e-10 67.8 53 58.5
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 9.1e-10 67.0 51 60.8
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 2.0e-09 65.9 63 50.8
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 1.3e-08 63.2 48 64.6
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 2.9e-08 62.0 43 67.4
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 9.4e-07 57.0 42 59.5


User provided reference genes

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