Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1539.2 752 100.0
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1376.7 752 88.7
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1311.2 752 85.0
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1276.5 752 83.6
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1275.8 751 82.6
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1275.4 752 83.6
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1272.7 752 83.5
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1261.1 751 81.6
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1249.6 750 81.2
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1231.9 753 81.0
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1228.4 753 80.9
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1226.8 753 80.6
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1226.1 758 80.5
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1225.3 776 77.6
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1223.0 753 80.2
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1221.1 753 80.5
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1220.3 764 78.9
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1199.1 776 76.0
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 0.0e+00 1196.0 752 77.5
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1196.0 755 79.3
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1192.9 785 75.9
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1192.2 755 78.9
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1182.2 755 78.9
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1177.9 754 77.9
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1171.0 752 77.4
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1169.8 754 77.6
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1166.0 775 74.2
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1151.3 755 76.7
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1147.5 778 73.1
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1146.7 756 74.7
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 0.0e+00 1132.1 777 72.3
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1129.8 753 76.1
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1124.8 775 72.9
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1122.5 769 73.1
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1122.5 775 72.8
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1122.1 755 73.4
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1121.3 771 72.2
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1120.5 771 72.2
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 0.0e+00 1119.8 756 73.4
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1116.7 775 71.9
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1115.9 722 78.0
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1115.9 772 72.3
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1115.1 773 71.9
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1114.8 756 73.3
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1113.2 773 71.3
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1111.7 755 73.1
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1109.7 773 70.6
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1109.7 770 72.1
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1108.6 768 70.1
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1107.0 770 70.5
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1106.3 755 72.6
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1106.3 756 73.1
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1106.3 798 69.9
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1105.5 756 73.4
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1104.0 770 70.4
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1103.2 775 71.2
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1101.3 772 69.7
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1100.5 784 70.5
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1099.3 773 71.3
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 0.0e+00 1097.4 761 71.4
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1094.3 773 70.1
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1088.9 774 69.8
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1085.5 774 69.5
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 0.0e+00 1085.5 769 70.9
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 0.0e+00 1083.9 767 70.8
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 0.0e+00 1082.8 755 72.5
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 0.0e+00 1079.3 760 71.1
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1075.5 774 68.9
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 2.1e-311 1072.0 753 71.6
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 1.0e-310 1069.7 750 70.7
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.3e-310 1068.5 774 69.0
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 8.6e-310 1066.6 774 68.9
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 8.6e-310 1066.6 774 68.9
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 1.1e-309 1066.2 751 69.9
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.5e-309 1065.8 750 69.9
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.9e-309 1065.4 774 68.5
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 1.6e-308 1062.4 751 69.6
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 4.8e-308 1060.8 752 69.7
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 6.2e-308 1060.4 752 72.3
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 4.0e-307 1057.7 751 69.6
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 7.6e-306 1053.5 755 70.3
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 7.1e-304 1047.0 857 65.3
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 4.6e-303 1044.3 774 67.3
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 1.8e-302 1042.3 753 68.5
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 3.0e-302 1041.6 769 68.1
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 5.6e-301 1037.3 771 67.1
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 1.3e-300 1036.2 754 68.3
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 6.2e-300 1033.9 755 67.9
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 3.1e-299 1031.6 771 66.9
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 6.9e-299 1030.4 774 66.4
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 1.2e-298 1029.6 777 66.8
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 2.2e-297 1025.4 757 67.9
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.6e-295 1019.2 777 66.2
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 6.0e-295 1017.3 765 68.0
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.3e-294 1016.1 765 67.3
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 2.3e-294 1015.4 794 65.9
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.9e-293 1012.3 814 63.0
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 4.8e-292 1007.7 769 65.8
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 4.8e-292 1007.7 766 64.9
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 8.2e-292 1006.9 770 66.5
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 1.4e-291 1006.1 775 64.0
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 1.8e-291 1005.7 779 64.8
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 2.4e-291 1005.4 779 65.1
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 5.3e-291 1004.2 746 68.5
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 5.3e-291 1004.2 759 67.3
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 3.4e-290 1001.5 777 64.6
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 1.3e-289 999.6 774 65.6
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 1.1e-288 996.5 806 62.7
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.1e-288 996.5 773 64.8
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.5e-288 995.3 777 64.1
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 9.3e-288 993.4 775 65.2
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 4.6e-287 991.1 772 64.4
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.3e-286 989.6 778 65.0
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 3.0e-286 988.4 767 66.1
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 3.9e-286 988.0 683 74.4
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 4.3e-285 984.6 766 65.0
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 2.8e-284 981.9 777 64.5
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 5.3e-283 977.6 774 63.4
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 4.5e-282 974.5 775 62.6
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 7.6e-282 973.8 772 64.5
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.2e-281 972.2 777 64.5
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 2.4e-275 952.2 777 62.4
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 2.9e-273 945.3 767 62.6
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.4e-272 943.0 754 63.5
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 9.7e-269 930.2 708 67.1
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 1.3e-268 929.9 758 64.9
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 6.3e-268 927.5 758 64.9
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 1.8e-267 926.0 769 61.4
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 3.8e-265 918.3 767 61.5
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.7e-263 911.4 766 60.3
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 6.1e-255 884.4 768 59.2
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 5.2e-254 881.3 767 60.4
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 6.7e-254 880.9 771 59.8
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 2.6e-253 879.0 664 67.2
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 5.7e-253 877.9 766 59.5
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 6.3e-252 874.4 721 64.6
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 5.0e-241 838.2 762 57.0
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.2e-223 780.4 739 56.2
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 4.5e-189 665.6 421 76.0
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 3.8e-188 662.5 777 47.1
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 7.1e-187 658.3 419 79.7
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.9e-184 650.2 741 47.9
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 3.3e-184 649.4 750 48.3
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 7.9e-178 628.2 770 45.2
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 4.3e-176 622.5 768 46.5
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 2.5e-171 606.7 797 43.4
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 3.6e-162 576.2 387 72.1
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 7.9e-162 575.1 387 71.6
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 5.0e-156 555.8 778 40.6
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 3.6e-154 549.7 278 92.1
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.2e-151 540.4 392 67.6
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 8.8e-137 491.9 556 47.3
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.6e-133 481.1 458 56.8
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 4.0e-121 439.9 253 81.4
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.3e-116 424.9 453 49.4
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 3.0e-100 370.5 745 34.2
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.2e-78 297.4 279 57.7
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 1.6e-69 268.5 755 29.1
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 3.1e-57 227.6 288 45.8
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 3.7e-50 204.1 142 71.8
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 1.5e-48 198.7 190 55.3
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.0e-44 186.0 149 66.4
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.8e-39 167.5 82 85.4
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 4.2e-30 137.5 65 86.2
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.7e-23 115.5 183 38.8
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 7.2e-22 110.2 142 39.4
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 4.5e-16 90.9 73 57.5
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 8.0e-13 80.1 108 44.4
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 2.3e-12 78.6 103 41.7
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 5.2e-12 77.4 66 53.0
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 7.5e-11 73.6 101 41.6


User provided reference genes

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