Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 1.1e-217 759.6 364 100.0
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 4.4e-134 481.9 367 68.4
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 2.9e-133 479.2 365 68.2
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 7.6e-118 427.9 363 61.7
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 2.2e-117 426.4 365 61.9
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 4.2e-116 422.2 366 60.9
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 3.5e-115 419.1 369 58.8
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 6.0e-115 418.3 332 62.0
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 6.0e-115 418.3 369 58.5
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.0e-114 417.5 369 58.8
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 1.3e-114 417.2 364 60.4
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 8.1e-112 407.9 378 57.7
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 1.4e-111 407.1 261 73.9
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 3.1e-111 406.0 284 68.3
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 1.2e-110 404.1 252 74.2
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 1.5e-110 403.7 362 55.8
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 5.8e-110 401.7 284 68.3
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 7.6e-110 401.4 296 66.2
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 7.6e-110 401.4 337 60.2
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 3.8e-109 399.1 281 69.4
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 1.1e-108 397.5 331 60.4
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 1.4e-108 397.1 364 57.1
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 7.1e-108 394.8 287 68.6
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 1.2e-107 394.0 285 66.7
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 2.7e-107 392.9 371 56.6
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 4.6e-107 392.1 301 64.8
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 1.7e-106 390.2 219 81.3
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 3.3e-105 386.0 255 71.8
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 5.6e-105 385.2 245 72.7
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 1.6e-104 383.6 364 55.5
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 6.2e-104 381.7 302 61.9
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 1.8e-103 380.2 374 56.4
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 2.4e-103 379.8 279 67.0
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 4.0e-103 379.0 244 71.7
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 9.0e-103 377.9 374 54.3
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.2e-102 377.5 374 54.3
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.2e-102 377.5 374 54.3
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 3.4e-102 375.9 304 61.2
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 7.6e-102 374.8 369 54.7
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 7.6e-102 374.8 375 54.1
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 1.7e-101 373.6 302 62.3
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 2.2e-101 373.2 352 57.1
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 2.9e-101 372.9 335 56.1
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 3.8e-101 372.5 256 69.5
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 3.8e-101 372.5 374 54.5
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 4.9e-101 372.1 361 56.0
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 4.9e-101 372.1 326 60.4
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 8.4e-101 371.3 289 62.3
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.9e-100 370.2 316 61.1
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.4e-100 369.8 337 56.4
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 2.4e-100 369.8 278 65.1
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 3.2e-100 369.4 283 64.7
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 5.4e-100 368.6 332 57.2
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 5.4e-100 368.6 286 64.7
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 9.3e-100 367.9 250 69.6
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 1.6e-99 367.1 359 55.2
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 2.1e-99 366.7 221 75.1
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 4.6e-99 365.5 288 63.9
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 4.6e-99 365.5 284 63.4
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 6.0e-99 365.2 292 62.3
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 7.9e-99 364.8 275 62.2
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 7.9e-99 364.8 251 68.9
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 1.0e-98 364.4 251 68.5
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.0e-98 364.4 354 56.2
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.3e-98 364.0 333 55.6
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 1.8e-98 363.6 347 56.5
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 1.8e-98 363.6 301 62.5
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 2.3e-98 363.2 368 54.9
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 2.3e-98 363.2 356 55.1
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 5.1e-98 362.1 364 54.7
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 5.1e-98 362.1 290 62.1
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 8.7e-98 361.3 346 56.1
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 8.7e-98 361.3 298 59.1
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 1.1e-97 360.9 353 56.7
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 1.9e-97 360.1 279 64.2
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 2.5e-97 359.8 245 69.4
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 4.3e-97 359.0 301 58.8
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 7.4e-97 358.2 246 69.1
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 7.4e-97 358.2 277 62.5
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 9.6e-97 357.8 285 62.1
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 1.6e-96 357.1 255 65.9
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 1.6e-96 357.1 285 62.1
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 6.2e-96 355.1 225 74.7
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 8.1e-96 354.8 299 58.2
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 8.1e-96 354.8 231 72.7
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.1e-95 354.4 387 50.4
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 1.4e-95 354.0 363 50.7
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 1.4e-95 354.0 211 76.3
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 2.4e-95 353.2 307 59.0
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 2.4e-95 353.2 258 65.9
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 3.1e-95 352.8 286 59.4
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 4.0e-95 352.4 223 72.6
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 4.0e-95 352.4 222 73.9
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 9.0e-95 351.3 211 76.8
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 1.5e-94 350.5 322 56.2
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 1.5e-94 350.5 322 56.2
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 2.6e-94 349.7 249 66.7
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 5.8e-94 348.6 253 63.6
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 7.6e-94 348.2 285 61.1
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 1.0e-93 347.8 286 59.4
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 1.0e-93 347.8 286 59.4
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 2.2e-93 346.7 206 77.2
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 2.2e-93 346.7 192 80.7
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 6.4e-93 345.1 245 68.6
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 8.4e-93 344.7 286 60.1
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 3.2e-92 342.8 286 59.8
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 4.2e-92 342.4 319 52.0
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 2.7e-91 339.7 319 52.0
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 2.7e-91 339.7 222 70.3
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 3.5e-91 339.3 367 51.2
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 1.3e-90 337.4 203 73.4
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 5.1e-90 335.5 203 73.4
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.5e-89 334.0 220 71.4
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.3e-88 330.9 221 71.5
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 6.9e-87 325.1 198 73.7
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.4e-84 317.4 317 53.6
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 5.1e-82 308.9 247 57.5
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 6.7e-82 308.5 229 65.1
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 7.9e-75 285.0 275 55.3
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 9.7e-73 278.1 248 53.6
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 2.2e-72 276.9 161 75.8
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 6.3e-72 275.4 200 60.0
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 2.6e-70 270.0 313 51.8
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 4.5e-70 269.2 160 71.2
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 4.5e-70 269.2 161 73.9
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 9.4e-68 261.5 251 57.8
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 3.9e-66 256.1 150 75.3
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 6.5e-61 238.8 143 73.4
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 1.4e-58 231.1 203 52.7
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 5.5e-52 209.1 121 73.6
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 8.8e-50 201.8 150 61.3
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 5.9e-46 189.1 177 49.7
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 1.8e-42 177.6 156 53.2
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 9.2e-31 138.7 113 55.8
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 6.8e-26 122.5 199 43.7
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 9.8e-25 118.6 86 60.5
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 1.9e-23 114.4 139 50.4
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 2.4e-23 114.0 209 38.3
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 5.6e-20 102.8 166 42.8
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 9.5e-20 102.1 170 43.5
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.3e-16 91.7 57 77.2
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 1.4e-15 88.2 90 57.8
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 3.9e-13 80.1 90 52.2
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 1.7e-08 64.7 35 65.7
SEGI_31523 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 4.9e-08 63.2 102 39.2
Zm00001eb382840 Zea mays HOM05D003596 ORTHO05D004256 2.7e-06 57.4 43 60.5


User provided reference genes

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