Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 1.2e-50 203.0 106 100.0
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 8.8e-43 176.8 106 84.9
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 1.2e-42 176.4 106 82.1
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 6.3e-41 170.6 106 78.3
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 8.3e-41 170.2 106 78.3
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 1.8e-40 169.1 106 77.4
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 2.4e-40 168.7 103 80.6
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 2.4e-40 168.7 106 80.2
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 5.4e-40 167.5 106 80.2
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 7.0e-40 167.2 106 77.4
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 1.2e-39 166.4 105 79.0
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 1.2e-39 166.4 106 78.3
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 1.6e-39 166.0 106 77.4
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 1.6e-39 166.0 106 75.5
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 5.9e-39 164.1 106 79.2
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 5.9e-39 164.1 106 75.5
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 5.9e-39 164.1 106 75.5
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 5.9e-39 164.1 106 76.4
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 7.8e-39 163.7 105 77.1
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 7.8e-39 163.7 105 77.1
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 1.0e-38 163.3 106 75.5
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 1.0e-38 163.3 106 77.4
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 1.0e-38 163.3 106 77.4
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 2.3e-38 162.2 106 78.3
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 2.9e-38 161.8 105 76.2
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 3.8e-38 161.4 106 77.4
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 5.0e-38 161.0 106 74.5
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 6.6e-38 160.6 106 75.5
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 6.6e-38 160.6 106 75.5
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 1.1e-37 159.8 106 73.6
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 1.1e-37 159.8 105 75.2
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 1.1e-37 159.8 106 75.5
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 1.1e-37 159.8 106 73.6
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 1.5e-37 159.5 106 75.5
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 1.5e-37 159.5 106 75.5
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 1.9e-37 159.1 106 72.6
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 2.5e-37 158.7 106 75.5
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 3.3e-37 158.3 106 72.6
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 4.3e-37 157.9 106 74.5
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 4.3e-37 157.9 106 72.6
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 5.6e-37 157.5 106 72.6
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 7.3e-37 157.1 106 71.7
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 7.3e-37 157.1 104 74.0
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 1.6e-36 156.0 106 72.6
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 1.6e-36 156.0 105 74.3
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 2.1e-36 155.6 106 70.8
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 2.8e-36 155.2 106 72.6
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 2.8e-36 155.2 106 70.8
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 4.7e-36 154.5 106 71.7
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 4.7e-36 154.5 106 73.6
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 4.7e-36 154.5 106 71.7
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 6.1e-36 154.1 106 72.6
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 1.0e-35 153.3 104 75.0
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 1.0e-35 153.3 104 72.1
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 1.4e-35 152.9 106 70.8
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.8e-35 152.5 106 71.7
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 1.8e-35 152.5 106 72.6
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 1.8e-35 152.5 106 70.8
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 1.8e-35 152.5 105 73.3
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 3.0e-35 151.8 106 70.8
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 4.0e-35 151.4 106 70.8
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 4.0e-35 151.4 106 72.6
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 4.0e-35 151.4 106 70.8
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 6.8e-35 150.6 106 68.9
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 1.2e-34 149.8 106 71.7
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 1.2e-34 149.8 105 72.4
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 1.5e-34 149.4 106 69.8
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 1.5e-34 149.4 106 71.7
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.5e-34 149.4 106 71.7
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.5e-34 149.4 106 71.7
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 2.6e-34 148.7 106 69.8
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 2.6e-34 148.7 103 70.9
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 3.4e-34 148.3 106 69.8
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 3.4e-34 148.3 106 71.7
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 4.4e-34 147.9 105 66.7
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 4.4e-34 147.9 106 71.7
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 4.4e-34 147.9 106 73.6
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 5.7e-34 147.5 106 68.9
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 5.7e-34 147.5 105 66.7
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 5.7e-34 147.5 106 71.7
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 5.7e-34 147.5 106 70.8
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 5.7e-34 147.5 106 70.8
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 5.7e-34 147.5 106 71.7
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 7.5e-34 147.1 106 70.8
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 7.5e-34 147.1 106 69.8
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 1.3e-33 146.4 106 69.8
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.3e-33 146.4 106 69.8
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 1.3e-33 146.4 103 68.9
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 2.9e-33 145.2 102 72.5
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 3.7e-33 144.8 106 68.9
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 3.7e-33 144.8 106 68.9
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 3.7e-33 144.8 106 68.9
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 3.7e-33 144.8 106 68.9
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 3.7e-33 144.8 106 68.9
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 3.7e-33 144.8 105 66.7
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 3.7e-33 144.8 105 66.7
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 4.9e-33 144.4 106 67.9
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 6.4e-33 144.1 105 65.7
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 6.4e-33 144.1 106 68.9
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 8.3e-33 143.7 105 68.6
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 1.1e-32 143.3 105 64.8
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 1.1e-32 143.3 102 67.6
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 1.4e-32 142.9 91 74.7
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 3.2e-32 141.7 102 70.6
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 7.0e-32 140.6 105 64.8
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 9.2e-32 140.2 101 65.3
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 1.6e-31 139.4 104 63.5
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 1.6e-31 139.4 105 61.9
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 2.7e-31 138.7 129 56.6
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 3.5e-31 138.3 106 67.0
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 7.8e-31 137.1 105 65.7
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 1.3e-30 136.3 113 63.7
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 1.9e-29 132.5 103 65.0
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 3.3e-29 131.7 96 69.8
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 3.3e-29 131.7 96 69.8
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 4.3e-29 131.3 103 64.1
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 4.3e-29 131.3 106 63.2
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 5.6e-29 131.0 103 63.1
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 9.5e-29 130.2 101 63.4
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 9.5e-29 130.2 103 64.1
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 1.6e-28 129.4 103 63.1
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 1.6e-28 129.4 103 63.1
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 1.6e-28 129.4 103 63.1
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 1.6e-28 129.4 103 63.1
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 1.6e-28 129.4 103 63.1
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 2.1e-28 129.0 102 64.7
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 2.8e-28 128.6 103 64.1
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 3.6e-28 128.3 103 63.1
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 4.7e-28 127.9 97 61.9
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 5.2e-27 124.4 103 57.3
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 2.6e-26 122.1 106 60.4
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 3.4e-26 121.7 105 62.9
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 1.3e-25 119.8 103 59.2
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 6.4e-25 117.5 95 58.9
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 1.9e-24 115.9 104 60.6
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 1.1e-21 106.7 85 61.2
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 3.6e-20 101.7 103 53.4
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 2.7e-15 85.5 60 73.3
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 3.9e-14 81.6 62 67.7
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 2.1e-07 59.3 102 37.3
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 2.7e-07 58.9 102 37.3
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 3.5e-07 58.5 101 37.6
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 4.6e-07 58.2 52 59.6
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 6.0e-07 57.8 102 35.3
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 6.0e-07 57.8 59 57.6
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 7.8e-07 57.4 104 34.6
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 1.0e-06 57.0 103 37.9
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 1.0e-06 57.0 103 37.9
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 1.0e-06 57.0 103 37.9
Thhalv10008894m.g Eutrema salsugineum HOM05D008080 ORTHO05D010244 1.3e-06 56.6 96 38.5
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 1.7e-06 56.2 103 36.9
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 1.7e-06 56.2 59 55.9
CBR_g50174 Chara braunii HOM05D004888 ORTHO05D005792 2.3e-06 55.8 98 38.8
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 2.3e-06 55.8 102 34.3
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 3.0e-06 55.5 102 37.3
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 3.0e-06 55.5 102 37.3
PGR031G1607 Punica granatum HOM05D004888 ORTHO05D005792 3.0e-06 55.5 102 36.3
Solyc10g006310.3 Solanum lycopersicum HOM05D004888 ORTHO05D005792 3.0e-06 55.5 104 36.5
A03p41780 Brassica napus HOM05D001160 ORTHO05D005792 3.9e-06 55.1 102 37.3
Nitab4.5_0005048g0090 Nicotiana tabacum HOM05D004888 ORTHO05D005792 3.9e-06 55.1 95 38.9
Peaxi162Scf00964g00141 Petunia axillaris HOM05D004888 ORTHO05D005792 3.9e-06 55.1 101 34.7
RcHm_v2.0_Chr5g0039111 Rosa chinensis HOM05D004888 ORTHO05D005792 3.9e-06 55.1 101 37.6
Sopen10g002260 Solanum pennellii HOM05D004888 ORTHO05D005792 3.9e-06 55.1 104 36.5
BcaC01g03552 Brassica carinata HOM05D001160 ORTHO05D001092 6.6e-06 54.3 102 36.3
BolC3t17405H Brassica oleracea HOM05D001160 ORTHO05D001092 6.6e-06 54.3 102 36.3
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 8.6e-06 53.9 100 34.0
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 8.6e-06 53.9 100 34.0
Rhsim06G0216300 Rhododendron simsii HOM05D004888 ORTHO05D005792 8.6e-06 53.9 102 36.3


User provided reference genes

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