Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G085700 Manihot esculenta HOM05D007323 ORTHO05D009238 3.8e-126 454.9 239 100.0
Duzib150G1239 Durio zibethinus HOM05D007323 ORTHO05D009238 1.3e-81 307.0 233 72.1
Thecc.09G063400 Theobroma cacao HOM05D007323 ORTHO05D009238 2.2e-81 306.2 242 70.7
COL.COLO4_21139 Corchorus olitorius HOM05D007323 ORTHO05D009238 1.2e-79 300.4 244 70.1
Cfa017873 Carpinus fangiana HOM05D007323 ORTHO05D009238 9.5e-77 290.8 239 67.4
Lalb_Chr08g0244811 Lupinus albus HOM05D007323 ORTHO05D009238 1.2e-76 290.4 216 70.8
Ca_15835_v3 Cicer arietinum L. HOM05D007323 ORTHO05D009238 3.6e-76 288.9 240 66.7
Lj1g0021270 Lotus japonicus HOM05D007323 ORTHO05D009238 4.0e-75 285.4 239 68.6
Glyma.06G055900 Glycine max HOM05D007323 ORTHO05D009238 6.8e-75 284.6 240 67.9
CANSAT25G3877 Cannabis sativa HOM05D007323 ORTHO05D009238 8.9e-75 284.3 234 66.7
TWI34G0887 Tripterygium wilfordii HOM05D007323 ORTHO05D009238 8.9e-75 284.3 241 66.4
Gorai.001G020100 Gossypium raimondii HOM05D007323 ORTHO05D009238 2.0e-74 283.1 224 69.6
Dinv41843 Davidia involucrata HOM05D007323 ORTHO05D009238 5.8e-74 281.6 239 66.9
Sabra06G0170600 Salix brachista HOM05D007323 ORTHO05D009238 2.9e-73 279.3 213 71.4
PGR031G0894 Punica granatum HOM05D007323 ORTHO05D009238 3.7e-73 278.9 244 63.9
QL02p017014 Quercus lobata HOM05D007323 ORTHO05D009238 6.4e-73 278.1 246 62.6
Potri.006G220800 Populus trichocarpa HOM05D007323 ORTHO05D009238 1.1e-72 277.3 246 64.6
VMungo1309G0522 Vigna mungo HOM05D007323 ORTHO05D009238 1.1e-72 277.3 241 66.0
Phvul.009G082000 Phaseolus vulgaris HOM05D007323 ORTHO05D009238 5.4e-72 275.0 240 65.8
Gohir.D07G019400 Gossypium hirsutum HOM05D007323 ORTHO05D009238 7.0e-72 274.6 224 69.2
Ciclev10009314m.g Citrus clementina HOM05D007323 ORTHO05D009238 2.0e-71 273.1 244 64.8
Haze_18294 Corylus avellana HOM05D007323 ORTHO05D009238 1.7e-70 270.0 289 55.7
Eucgr.B01965 Eucalyptus grandis HOM05D007323 ORTHO05D009238 1.7e-70 270.0 195 71.8
FvH4_2g30980 Fragaria vesca HOM05D007323 ORTHO05D009238 3.9e-70 268.9 242 65.3
GSVIVG01035470001 Vitis vinifera HOM05D007323 ORTHO05D009238 5.0e-70 268.5 183 75.4
CiPaw.16G068300 Carya illinoinensis HOM05D007323 ORTHO05D009238 6.6e-70 268.1 239 62.8
Prupe.1G404100 Prunus persica HOM05D007323 ORTHO05D009238 6.6e-70 268.1 243 66.3
RcHm_v2.0_Chr6g0311811 Rosa chinensis HOM05D007323 ORTHO05D009238 6.6e-70 268.1 236 66.1
FAN24G0989 Fragaria x ananassa HOM05D007323 ORTHO05D009238 8.6e-70 267.7 242 65.3
ECA234G0604 Erigeron canadensis HOM05D007323 ORTHO05D009238 1.5e-69 266.9 241 61.4
Medtr3g105050 Medicago truncatula HOM05D007323 ORTHO05D009238 1.5e-69 266.9 205 71.2
FAN20G2477 Fragaria x ananassa HOM05D007323 ORTHO05D009238 3.3e-69 265.8 242 64.9
Nn8g38659 Nelumbo nucifera HOM05D007323 ORTHO05D009238 3.3e-69 265.8 229 62.9
Actinidia03545 Actinidia chinensis HOM05D007323 ORTHO05D009238 1.2e-68 263.8 204 68.6
HanXRQChr10g0309971 Helianthus annuus HOM05D007323 ORTHO05D009238 1.2e-68 263.8 243 62.6
TPR.G3557 Trifolium pratense HOM05D007323 ORTHO05D009238 1.2e-68 263.8 195 73.3
arahy.Tifrunner.gnm1.ann1.7DEW7H Arachis hypogaea HOM05D007323 ORTHO05D009238 1.6e-68 263.5 243 63.4
FAN27G1709 Fragaria x ananassa HOM05D007323 ORTHO05D009238 2.1e-68 263.1 242 64.5
Sed0017686 Sechium edule HOM05D007323 ORTHO05D009238 2.8e-68 262.7 244 61.9
MD15G1049800 Malus domestica HOM05D007323 ORTHO05D009238 4.7e-68 261.9 243 65.0
ClCG08G009880 Citrullus lanatus HOM05D007323 ORTHO05D009238 8.0e-68 261.2 243 63.0
Lsat_1_v5_gn_5_79461 Lactuca sativa HOM05D007323 ORTHO05D009238 1.8e-67 260.0 241 60.2
Aqoxy7G01049 Aquilegia oxysepala HOM05D007323 ORTHO05D009238 2.3e-67 259.6 207 69.1
Gohir.A07G019600 Gossypium hirsutum HOM05D007323 ORTHO05D009238 8.9e-67 257.7 197 73.1
Cc08_g01150 Coffea canephora HOM05D007323 ORTHO05D009238 2.0e-66 256.5 241 60.2
Rhsim10G0107900 Rhododendron simsii HOM05D007323 ORTHO05D009238 2.0e-66 256.5 175 77.1
CsaV3_6G031970 Cucumis sativus L. HOM05D007323 ORTHO05D009238 4.4e-66 255.4 243 61.3
SGA_v2.0_scaffold20G09163 Striga asiatica HOM05D007323 ORTHO05D009238 4.4e-66 255.4 227 61.7
Sc06g0001110 Simmondsia chinensis HOM05D007323 ORTHO05D009238 1.3e-65 253.8 223 62.8
EL10Ac2g03780 Beta vulgaris HOM05D007323 ORTHO05D009238 1.4e-64 250.4 241 60.2
MELO3C011483.2 Cucumis melo HOM05D007323 ORTHO05D009238 2.4e-64 249.6 229 62.0
Nitab4.5_0002831g0040 Nicotiana tabacum HOM05D007323 ORTHO05D009238 1.2e-63 247.3 246 58.1
Hund03297 Selenicereus undatus HOM05D007323 ORTHO05D009238 3.5e-63 245.7 246 58.9
Atru.chr7.1847 Acer truncatum HOM05D007323 ORTHO05D009238 4.6e-63 245.4 173 72.8
Migut.A00078 Erythranthe guttata HOM05D007323 ORTHO05D009238 1.7e-62 243.4 240 57.9
arahy.Tifrunner.gnm1.ann1.287SRD Arachis hypogaea HOM05D007323 ORTHO05D009238 2.3e-62 243.0 250 59.6
Sopen08g017220 Solanum pennellii HOM05D007323 ORTHO05D009238 3.0e-62 242.7 246 56.1
vmacro05236 Vaccinium macrocarpon HOM05D007323 ORTHO05D009238 3.9e-62 242.3 172 73.8
Nitab4.5_0000446g0180 Nicotiana tabacum HOM05D007323 ORTHO05D009238 8.6e-62 241.1 246 56.9
CDE05G0862 Ceratophyllum demersum HOM05D007323 ORTHO05D009238 1.9e-61 240.0 223 60.5
unitig_8.g4975 Utricularia gibba HOM05D007323 ORTHO05D009238 5.6e-61 238.4 215 60.5
HPP92_024332 Vanilla planifolia HOM05D007323 ORTHO05D009238 5.6e-61 238.4 191 67.0
C08p38170 Brassica napus HOM05D007323 ORTHO05D009238 7.3e-61 238.0 230 57.8
BolC8t51392H Brassica oleracea HOM05D007323 ORTHO05D009238 7.3e-61 238.0 230 57.8
MSTRG.25986 Avicennia marina HOM05D007323 ORTHO05D009238 9.5e-61 237.7 221 59.7
BcaC07g40825 Brassica carinata HOM05D007323 ORTHO05D009238 3.6e-60 235.7 222 58.6
PSO421G0353 Papaver somniferum HOM05D007323 ORTHO05D009238 3.6e-60 235.7 228 57.0
PSO063G6894 Papaver somniferum HOM05D007323 ORTHO05D009238 1.8e-59 233.4 246 55.7
BraA09t40931Z Brassica rapa HOM05D007323 ORTHO05D009238 2.3e-59 233.0 232 56.9
DCAR_007767 Daucus carota HOM05D007323 ORTHO05D009238 4.0e-59 232.3 231 61.0
A09p55240 Brassica napus HOM05D007323 ORTHO05D009238 6.8e-59 231.5 234 56.0
BcaB08g35255 Brassica carinata HOM05D007323 ORTHO05D009238 1.2e-58 230.7 228 57.9
Sp4g06990 Schrenkiella parvula HOM05D007323 ORTHO05D009238 3.4e-58 229.2 227 56.8
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 1.3e-57 227.3 203 60.1
Thhalv10002091m.g Eutrema salsugineum HOM05D007323 ORTHO05D009238 2.2e-57 226.5 229 58.1
ATR0598G133 Amborella trichopoda HOM05D007323 ORTHO05D009238 1.4e-56 223.8 177 67.8
AL4G18960 Arabidopsis lyrata HOM05D007323 ORTHO05D009238 1.2e-55 220.7 218 56.9
Psat5g030560 Pisum sativum HOM05D007323 ORTHO05D009238 4.6e-55 218.8 196 62.8
Aa31LG2G12250 Aethionema arabicum HOM05D007323 ORTHO05D009238 8.6e-54 214.5 213 56.8
Carub.0004s0625 Capsella rubella HOM05D007323 ORTHO05D009238 5.6e-53 211.8 224 54.0
Os03g0176700 Oryza sativa ssp. japonica HOM05D007323 ORTHO05D009238 7.3e-53 211.5 194 60.8
Zm00001eb005760 Zea mays HOM05D007323 ORTHO05D009238 2.4e-51 206.5 170 65.9
AUR62009079 Chenopodium quinoa HOM05D007323 ORTHO05D009238 2.0e-50 203.4 162 69.1
AT2G26340 Arabidopsis thaliana HOM05D007323 ORTHO05D009238 4.9e-49 198.7 237 52.7
SEGI_00918 Sequoiadendron giganteum HOM05D007323 ORTHO05D009238 4.9e-49 198.7 209 53.6
A09p54710 Brassica napus HOM05D007323 ORTHO05D009238 1.4e-48 197.2 169 60.9
CARHR118450 Cardamine hirsuta HOM05D007323 ORTHO05D009238 1.2e-47 194.1 177 59.3
Eucgr.B01870 Eucalyptus grandis HOM05D007323 ORTHO05D009238 3.9e-46 189.1 134 73.1
AUR62020587 Chenopodium quinoa HOM05D007323 ORTHO05D009238 4.3e-45 185.7 240 51.7
Peaxi162Scf00486g01025 Petunia axillaris HOM05D007323 ORTHO05D009238 4.7e-44 182.2 238 48.3
AagrBONN_evm.TU.Sc2ySwM_228.4439 Anthoceros agrestis HOM05D007323 ORTHO05D009238 1.5e-42 177.2 213 47.4
TAR636G1368 Trochodendron aralioides HOM05D007323 ORTHO05D009238 2.6e-42 176.4 166 59.0
Pp3c4_13280 Physcomitrium patens HOM05D007323 ORTHO05D009238 2.2e-41 173.3 182 51.6
MBI13_g42814_MAGBIO Magnolia biondii HOM05D007323 ORTHO05D009238 1.6e-36 157.1 364 36.8
SMO239G0030 Selaginella moellendorffii HOM05D007323 ORTHO05D009238 2.6e-34 149.8 211 43.6
Mapoly0001s0019 Marchantia polymorpha HOM05D007323 ORTHO05D009238 8.4e-33 144.8 144 51.4
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 2.4e-32 143.3 104 74.0
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 2.4e-32 143.3 104 74.0
Cpa.g.sc126.24 Carica papaya HOM05D007323 ORTHO05D009238 2.4e-32 143.3 103 71.8
CBR_g19268 Chara braunii HOM05D007323 ORTHO05D009238 1.1e-27 127.9 141 47.5
MD08G1071400 Malus domestica HOM05D007323 ORTHO05D009238 1.0e-17 94.7 62 80.6
Cre16.g684150 Chlamydomonas reinhardtii HOM05D007323 ORTHO05D009238 4.6e-15 85.9 182 35.2
Solyc08g061800.3 Solanum lycopersicum HOM05D007323 ORTHO05D009238 3.1e-11 73.2 109 45.0
Os03g0176800 Oryza sativa ssp. japonica HOM05D009542 ORTHO05D294036 4.5e-10 69.3 134 34.3
Eucgr.C00726 Eucalyptus grandis HOM05D007323 ORTHO05D009238 2.7e-07 60.1 59 55.9
TAR624G1004 Trochodendron aralioides HOM05D000386 ORTHO05D414906 6.1e-07 58.9 32 87.5


User provided reference genes

Program Settings