Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G079900 Manihot esculenta HOM05D006276 ORTHO05D007724 9.5e-178 626.7 313 100.0
Potri.006G230000 Populus trichocarpa HOM05D006276 ORTHO05D007724 5.7e-130 468.0 314 73.9
Sabra06G0178200 Salix brachista HOM05D006276 ORTHO05D007724 5.5e-125 451.4 361 64.8
GSVIVG01035412001 Vitis vinifera HOM05D006276 ORTHO05D007724 6.5e-118 427.9 322 66.1
Ciclev10008931m.g Citrus clementina HOM05D006276 ORTHO05D007724 2.1e-116 422.9 322 65.8
QL02p001268 Quercus lobata HOM05D006276 ORTHO05D007724 2.1e-116 422.9 314 67.2
Dinv27981 Davidia involucrata HOM05D006276 ORTHO05D007724 3.9e-115 418.7 322 65.8
Atru.chr7.1056 Acer truncatum HOM05D006276 ORTHO05D007724 1.5e-114 416.8 319 65.2
Eucgr.C03044 Eucalyptus grandis HOM05D006276 ORTHO05D007724 7.4e-114 414.5 322 64.3
CiPaw.16G028900 Carya illinoinensis HOM05D006276 ORTHO05D007724 6.3e-113 411.4 314 65.9
Thecc.09G053300 Theobroma cacao HOM05D006276 ORTHO05D007724 2.4e-112 409.5 322 62.1
Duzib168G0463 Durio zibethinus HOM05D006276 ORTHO05D007724 9.1e-112 407.5 317 64.4
MD15G1060500 Malus domestica HOM05D006276 ORTHO05D007724 4.5e-111 405.2 321 64.8
Hma1.2p1_0482F.1_g162490 Hydrangea macrophylla HOM05D006276 ORTHO05D007724 2.9e-110 402.5 323 62.5
RcHm_v2.0_Chr6g0310851 Rosa chinensis HOM05D006276 ORTHO05D007724 1.1e-109 400.6 318 65.7
RcHm_v2.0_Chr6g0290791 Rosa chinensis HOM05D006276 ORTHO05D007724 7.2e-109 397.9 318 65.1
Actinidia01190 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.8e-107 393.3 321 62.3
CANSAT25G3436 Cannabis sativa HOM05D006276 ORTHO05D007724 6.7e-107 391.3 317 63.7
MD08G1060900 Malus domestica HOM05D006276 ORTHO05D007724 8.8e-107 391.0 314 65.6
COL.COLO4_21052 Corchorus olitorius HOM05D006276 ORTHO05D007724 7.5e-106 387.9 322 60.9
FvH4_2g31970 Fragaria vesca HOM05D006276 ORTHO05D007724 9.7e-106 387.5 318 64.2
TAR626G0576 Trochodendron aralioides HOM05D006276 ORTHO05D007724 3.7e-105 385.6 322 59.3
TWI34G0536 Tripterygium wilfordii HOM05D006276 ORTHO05D007724 5.9e-103 378.3 314 61.1
Peaxi162Scf00247g00720 Petunia axillaris HOM05D006276 ORTHO05D007724 1.3e-102 377.1 321 58.9
Gorai.009G045400 Gossypium raimondii HOM05D006276 ORTHO05D007724 1.7e-102 376.7 321 59.2
Solyc11g070020.3 Solanum lycopersicum HOM05D006276 ORTHO05D007724 5.0e-102 375.2 322 58.4
Sopen11g028700 Solanum pennellii HOM05D006276 ORTHO05D007724 5.0e-102 375.2 322 58.4
TAR383G0425 Trochodendron aralioides HOM05D006276 ORTHO05D007724 1.5e-101 373.6 322 60.9
PGSC0003DMG400025517 Solanum tuberosum HOM05D006276 ORTHO05D007724 1.9e-101 373.2 322 58.1
Nitab4.5_0003550g0010 Nicotiana tabacum HOM05D006276 ORTHO05D007724 1.6e-100 370.2 322 57.5
arahy.Tifrunner.gnm1.ann1.C6FL8N Arachis hypogaea HOM05D006276 ORTHO05D007724 3.6e-100 369.0 316 59.8
Cc08_g10550 Coffea canephora HOM05D006276 ORTHO05D007724 1.0e-99 367.5 319 59.6
Glyma.17G229400 Glycine max HOM05D006276 ORTHO05D007724 2.3e-99 366.3 320 59.7
arahy.Tifrunner.gnm1.ann1.PS3ZFP Arachis hypogaea HOM05D006276 ORTHO05D007724 3.0e-99 365.9 317 60.3
Haze_18196 Corylus avellana HOM05D006276 ORTHO05D007724 8.8e-99 364.4 314 60.8
ClCG08G017020 Citrullus lanatus HOM05D006276 ORTHO05D007724 1.5e-98 363.6 317 57.4
Sed0014483 Sechium edule HOM05D006276 ORTHO05D007724 1.5e-98 363.6 314 57.3
Nitab4.5_0001107g0140 Nicotiana tabacum HOM05D006276 ORTHO05D007724 2.0e-98 363.2 322 56.8
Lsat_1_v5_gn_3_24381 Lactuca sativa HOM05D006276 ORTHO05D007724 2.6e-98 362.8 317 56.5
CsaV3_2G025580 Cucumis sativus L. HOM05D006276 ORTHO05D007724 7.5e-98 361.3 319 58.0
Actinidia18190 Actinidia chinensis HOM05D006276 ORTHO05D007724 9.8e-98 360.9 315 59.7
Lalb_Chr14g0367711 Lupinus albus HOM05D006276 ORTHO05D007724 6.3e-97 358.2 323 60.1
VMungo0647G0182 Vigna mungo HOM05D006276 ORTHO05D007724 6.3e-97 358.2 321 57.3
Lj7A273T8 Lonicera japonica HOM05D006276 ORTHO05D007724 8.3e-97 357.8 322 58.4
THA.LOC104811244 Tarenaya hassleriana HOM05D006276 ORTHO05D007724 1.1e-96 357.5 318 58.5
Rhsim07G0142500 Rhododendron simsii HOM05D006276 ORTHO05D007724 3.1e-96 355.9 320 57.5
Phvul.001G034700 Phaseolus vulgaris HOM05D006276 ORTHO05D007724 5.4e-96 355.1 321 57.3
Ca_13170_v3 Cicer arietinum L. HOM05D006276 ORTHO05D007724 7.0e-96 354.8 316 59.8
HanXRQChr17g0538201 Helianthus annuus HOM05D006276 ORTHO05D007724 7.0e-96 354.8 316 56.0
Lj5g0000642 Lotus japonicus HOM05D006276 ORTHO05D007724 5.9e-95 351.7 317 59.3
Actinidia14712 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.0e-94 350.9 314 58.9
Migut.E01562 Erythranthe guttata HOM05D006276 ORTHO05D007724 1.3e-94 350.5 318 57.5
FAN24G2654 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.7e-94 350.1 393 51.9
TPR.G13142 Trifolium pratense HOM05D006276 ORTHO05D007724 1.7e-94 350.1 315 61.0
DCAR_004430 Daucus carota HOM05D006276 ORTHO05D007724 6.6e-94 348.2 323 54.8
Aqoxy5G01259 Aquilegia oxysepala HOM05D006276 ORTHO05D007724 3.3e-93 345.9 322 55.9
SalBow1G4959 Salvia bowleyana HOM05D006276 ORTHO05D007724 9.5e-93 344.4 333 53.2
Sed0008348 Sechium edule HOM05D006276 ORTHO05D007724 9.5e-93 344.4 314 55.1
Hund19457 Selenicereus undatus HOM05D006276 ORTHO05D007724 9.5e-93 344.4 320 54.4
Medtr1g016410 Medicago truncatula HOM05D006276 ORTHO05D007724 6.1e-92 341.7 320 57.8
Carub.0006s1034 Capsella rubella HOM05D006276 ORTHO05D007724 1.8e-91 340.1 318 56.0
PSO210G2260 Papaver somniferum HOM05D006276 ORTHO05D007724 2.3e-91 339.7 319 54.5
SGA_v2.0_scaffold169G38688 Striga asiatica HOM05D006276 ORTHO05D007724 3.0e-91 339.3 320 54.4
MSTRG.11659 Avicennia marina HOM05D006276 ORTHO05D007724 3.4e-90 335.9 320 54.1
Gohir.D05G044300 Gossypium hirsutum HOM05D006276 ORTHO05D007724 4.4e-90 335.5 321 54.8
Thhalv10014178m.g Eutrema salsugineum HOM05D006276 ORTHO05D007724 5.7e-90 335.1 318 54.7
EL10Ac2g03891 Beta vulgaris HOM05D006276 ORTHO05D007724 1.7e-89 333.6 320 54.4
AUR62022071 Chenopodium quinoa HOM05D006276 ORTHO05D007724 3.7e-89 332.4 316 55.7
PSO210G3453 Papaver somniferum HOM05D006276 ORTHO05D007724 3.7e-89 332.4 322 53.7
AT5G11810 Arabidopsis thaliana HOM05D006276 ORTHO05D007724 6.3e-89 331.6 318 54.1
SHI18737 Sapria himalayana HOM05D006276 ORTHO05D007724 7.0e-88 328.2 317 56.2
FAN15G3491 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.2e-87 327.4 437 45.8
A10p25940 Brassica napus HOM05D006276 ORTHO05D007724 1.0e-86 324.3 320 53.8
BraA03t09860Z Brassica rapa HOM05D006276 ORTHO05D007724 3.8e-86 322.4 319 53.9
Sp6g31790 Schrenkiella parvula HOM05D006276 ORTHO05D007724 3.8e-86 322.4 318 53.5
Oeu003983.2 Olea europaea HOM05D006276 ORTHO05D007724 5.0e-86 322.0 322 51.2
BraA10t44656Z Brassica rapa HOM05D006276 ORTHO05D007724 1.1e-85 320.9 320 53.1
C03p06010 Brassica napus HOM05D006276 ORTHO05D007724 4.7e-84 315.5 321 53.0
BolC3t13112H Brassica oleracea HOM05D006276 ORTHO05D007724 1.0e-83 314.3 318 51.9
AUR62009155 Chenopodium quinoa HOM05D006276 ORTHO05D007724 1.4e-83 313.9 342 50.9
A03p05210 Brassica napus HOM05D006276 ORTHO05D007724 2.3e-83 313.2 319 53.3
Cfa017950 Carpinus fangiana HOM05D006276 ORTHO05D007724 5.2e-83 312.0 239 64.4
C09p65020 Brassica napus HOM05D006276 ORTHO05D007724 2.0e-82 310.1 320 52.5
BolC9t59330H Brassica oleracea HOM05D006276 ORTHO05D007724 2.6e-82 309.7 320 52.2
CDE06G0120 Ceratophyllum demersum HOM05D006276 ORTHO05D007724 2.9e-81 306.2 325 52.0
BcaC04g19193 Brassica carinata HOM05D006276 ORTHO05D007724 4.1e-80 302.4 322 51.2
PSO478G1664 Papaver somniferum HOM05D006276 ORTHO05D007724 4.6e-79 298.9 331 49.2
Prupe.1G412500 Prunus persica HOM05D006276 ORTHO05D007724 1.3e-78 297.4 254 63.4
HPP92_004831 Vanilla planifolia HOM05D006276 ORTHO05D007724 1.9e-77 293.5 322 49.1
PSO782G4309 Papaver somniferum HOM05D006276 ORTHO05D007724 7.3e-77 291.6 315 51.7
Cpa.g.sc7.176 Carica papaya HOM05D006276 ORTHO05D007724 6.2e-76 288.5 228 64.5
Aa31LG3G15390 Aethionema arabicum HOM05D006276 ORTHO05D007724 1.1e-75 287.7 329 48.9
CiPaw.15G039400 Carya illinoinensis HOM05D006276 ORTHO05D007724 2.6e-74 283.1 324 50.3
Gohir.A05G042600 Gossypium hirsutum HOM05D006276 ORTHO05D007724 9.8e-74 281.2 261 55.6
Sc09g0009760 Simmondsia chinensis HOM05D006276 ORTHO05D007724 1.3e-73 280.8 291 51.5
MELO3C010755.2 Cucumis melo HOM05D006276 ORTHO05D007724 6.4e-73 278.5 324 49.7
CSS0027263 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 8.3e-73 278.1 297 53.5
FAN20G3006 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.1e-72 277.7 291 55.3
CARHR201350 Cardamine hirsuta HOM05D006276 ORTHO05D007724 2.4e-72 276.6 272 52.9
Nn3g20166 Nelumbo nucifera HOM05D006276 ORTHO05D007724 7.0e-72 275.0 276 51.8
BcaB01g05452 Brassica carinata HOM05D006276 ORTHO05D007724 2.1e-71 273.5 317 48.9
vmacro14246 Vaccinium macrocarpon HOM05D006276 ORTHO05D007724 6.0e-71 271.9 307 50.2
PGR044G2277 Punica granatum HOM05D006276 ORTHO05D007724 8.6e-70 268.1 316 49.7
ATR0564G292 Amborella trichopoda HOM05D006276 ORTHO05D007724 3.6e-68 262.7 300 49.7
Glyma.14G094000 Glycine max HOM05D006276 ORTHO05D007724 9.9e-66 254.6 234 57.7
Os02g0135600 Oryza sativa ssp. japonica HOM05D006276 ORTHO05D007724 2.4e-64 250.0 339 42.5
FAN27G2524 Fragaria x ananassa HOM05D006276 ORTHO05D007724 2.1e-63 246.9 391 41.9
Zm00001eb231620 Zea mays HOM05D006276 ORTHO05D007724 2.7e-63 246.5 335 41.8
AL6G22560 Arabidopsis lyrata HOM05D006276 ORTHO05D007724 6.6e-62 241.9 257 49.4
CDE04G1132 Ceratophyllum demersum HOM05D000032 ORTHO05D002561 2.4e-59 233.4 278 48.2
AagrBONN_evm.TU.Sc2ySwM_117.3789 Anthoceros agrestis HOM05D006276 ORTHO05D007724 6.8e-59 231.9 335 41.5
SEGI_30057 Sequoiadendron giganteum HOM05D006276 ORTHO05D007724 2.0e-58 230.3 308 42.9
Ah.10g034420 Amaranthus hybridus HOM05D006276 ORTHO05D007724 1.6e-55 220.7 314 42.0
Pp3c1_29470 Physcomitrium patens HOM05D006276 ORTHO05D007724 8.7e-54 214.9 329 38.6
Mapoly0103s0015 Marchantia polymorpha HOM05D006276 ORTHO05D007724 8.1e-52 208.4 327 35.2
Lj7P276T14 Lonicera japonica HOM05D006276 ORTHO05D007724 3.1e-51 206.5 169 60.4
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 9.0e-51 204.9 230 48.7
Pp3c14_20160 Physcomitrium patens HOM05D006276 ORTHO05D007724 4.4e-50 202.6 331 37.8
Thecc.08G113900 Theobroma cacao HOM05D006276 ORTHO05D007724 2.2e-49 200.3 250 46.0
Psat6g020720 Pisum sativum HOM05D006276 ORTHO05D007724 3.5e-47 193.0 199 55.3
SMO117G0325 Selaginella moellendorffii HOM05D006276 ORTHO05D007724 2.5e-45 186.8 313 38.0
PSO210G7329 Papaver somniferum HOM05D006276 ORTHO05D007724 1.3e-38 164.5 242 43.4
Oeu018645.1 Olea europaea HOM05D006276 ORTHO05D007724 1.8e-19 100.9 55 81.8
CSS0023315 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 3.6e-15 86.7 53 71.7
CSS0029180 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 3.6e-15 86.7 53 71.7
CARHR201360 Cardamine hirsuta HOM05D006276 ORTHO05D007724 5.1e-14 82.8 49 79.6
Lj7A276T16 Lonicera japonica HOM05D006276 ORTHO05D007724 6.5e-09 65.9 49 61.2


User provided reference genes

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