Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 8.5e-119 430.6 264 100.0
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 6.5e-87 324.7 260 68.5
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 2.1e-77 293.1 259 64.9
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 1.3e-71 273.9 259 63.7
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 8.0e-69 264.6 257 61.9
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 8.0e-69 264.6 259 59.8
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 2.0e-67 260.0 261 55.9
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 2.9e-66 256.1 270 61.9
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 3.7e-66 255.8 265 61.1
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.9e-65 253.4 259 56.8
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 5.4e-65 251.9 259 61.0
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.5e-64 249.2 283 57.2
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 7.8e-64 248.1 259 61.4
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 5.0e-63 245.4 263 56.7
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 5.0e-63 245.4 259 61.0
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 8.6e-63 244.6 265 57.7
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.9e-62 243.4 259 53.7
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.3e-62 242.7 259 53.7
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 9.5e-62 241.1 264 56.4
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 2.1e-61 240.0 264 57.6
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 2.8e-61 239.6 264 54.5
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 1.1e-60 237.7 263 55.9
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 6.8e-60 235.0 263 55.5
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 2.0e-59 233.4 263 54.8
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 4.4e-59 232.3 269 61.0
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 6.4e-58 228.4 270 55.9
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 6.4e-58 228.4 265 54.7
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 6.4e-58 228.4 179 67.6
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 5.4e-57 225.3 265 53.6
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 7.1e-57 224.9 263 52.1
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 1.2e-56 224.2 263 53.6
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 2.1e-56 223.4 266 54.1
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 4.6e-56 222.2 261 62.5
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 7.8e-56 221.5 265 55.8
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.3e-55 220.7 261 54.0
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 3.9e-55 219.2 266 57.9
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 8.6e-55 218.0 265 52.8
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 1.5e-54 217.2 283 52.3
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.9e-54 216.9 262 52.3
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 3.3e-54 216.1 180 64.4
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 3.3e-54 216.1 264 50.8
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 9.5e-54 214.5 232 54.3
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 4.7e-53 212.2 264 50.8
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 1.8e-52 210.3 268 54.5
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.8e-52 210.3 268 53.7
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.8e-52 210.3 326 46.3
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 6.8e-52 208.4 265 47.9
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 6.8e-52 208.4 257 54.1
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 6.8e-52 208.4 183 59.6
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 8.9e-52 208.0 265 52.1
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 1.5e-51 207.2 253 51.4
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.6e-51 206.5 253 53.8
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 3.4e-51 206.1 241 53.1
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 5.8e-51 205.3 264 53.8
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 7.6e-51 204.9 255 52.5
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 7.6e-51 204.9 263 49.0
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 2.2e-50 203.4 262 50.0
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 2.2e-50 203.4 253 52.2
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 2.9e-50 203.0 262 49.6
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 6.4e-50 201.8 263 56.3
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 8.4e-50 201.4 265 53.6
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 1.4e-49 200.7 265 47.5
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.9e-49 200.3 254 52.0
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 3.2e-49 199.5 240 54.2
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 3.2e-49 199.5 260 48.1
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 4.1e-49 199.1 265 51.7
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 7.1e-49 198.4 259 51.0
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 7.1e-49 198.4 259 51.0
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 7.1e-49 198.4 254 51.6
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 9.2e-49 198.0 254 50.4
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.5e-48 196.1 254 50.8
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 4.6e-48 195.7 264 49.2
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 6.0e-48 195.3 266 50.0
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.0e-47 194.5 269 49.4
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 1.3e-47 194.1 256 48.8
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.3e-47 194.1 196 63.8
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 1.7e-47 193.7 264 52.3
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 3.9e-47 192.6 252 50.8
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.6e-47 191.8 271 49.1
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 8.6e-47 191.4 272 49.3
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 8.6e-47 191.4 269 49.4
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 8.6e-47 191.4 253 50.6
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 8.6e-47 191.4 257 45.5
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 1.5e-46 190.7 263 51.3
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 1.9e-46 190.3 254 47.6
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.9e-46 190.3 254 48.8
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 1.9e-46 190.3 254 47.6
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 2.5e-46 189.9 272 50.0
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 4.3e-46 189.1 261 46.7
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 5.6e-46 188.7 289 49.5
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 7.3e-46 188.3 262 46.2
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 2.8e-45 186.4 172 56.4
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 4.7e-45 185.7 261 46.4
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 3.1e-44 183.0 256 47.3
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 4.0e-44 182.6 252 48.0
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 4.0e-44 182.6 266 50.8
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 4.0e-44 182.6 249 51.0
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 1.2e-43 181.0 264 45.8
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 4.4e-43 179.1 270 46.3
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 1.3e-42 177.6 257 46.3
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.7e-42 177.2 267 42.3
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 2.2e-42 176.8 264 50.4
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 2.9e-42 176.4 255 44.7
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 4.9e-42 175.6 260 47.3
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 8.4e-42 174.9 253 47.8
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 8.4e-42 174.9 276 49.6
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.1e-41 174.5 179 58.7
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 4.2e-41 172.6 164 56.1
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 2.1e-40 170.2 288 44.4
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.8e-40 168.3 270 43.3
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.3e-39 167.5 256 47.7
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 2.3e-39 166.8 153 61.4
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 9.6e-38 161.4 260 42.7
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.8e-37 159.8 175 49.1
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 2.8e-37 159.8 266 53.4
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 3.6e-37 159.5 264 45.5
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 8.1e-37 158.3 369 37.1
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 1.1e-36 157.9 257 43.2
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 3.1e-36 156.4 172 50.6
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 4.5e-35 152.5 276 45.7
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 9.9e-35 151.4 265 40.4
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 1.3e-34 151.0 173 49.1
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 4.2e-33 146.0 372 36.0
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 7.1e-33 145.2 276 44.9
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 1.7e-31 140.6 256 44.1
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 1.1e-30 137.9 135 54.8
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 6.2e-29 132.1 301 35.2
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 1.1e-28 131.3 153 52.9
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 4.2e-25 119.4 142 51.4
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 5.5e-25 119.0 258 39.9
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 1.3e-23 114.4 220 36.4
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 3.7e-21 106.3 140 44.3
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.7e-18 97.4 67 73.1
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 6.5e-18 95.5 158 37.3
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.4e-17 94.4 131 55.0
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 7.1e-17 92.0 205 32.7
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 7.1e-17 92.0 132 42.4
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 7.1e-17 92.0 132 61.4
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 1.2e-16 91.3 162 41.4
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 3.5e-16 89.7 97 47.4
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 4.6e-16 89.4 160 39.4
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 1.6e-13 80.9 138 48.6
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.8e-12 77.4 67 58.2
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 2.4e-12 77.0 228 31.1
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 7.9e-08 62.0 51 56.9
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 7.9e-08 62.0 51 56.9
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 5.1e-07 59.3 224 31.2
Actinidia18194 Actinidia chinensis HOM05D004579 ORTHO05D005376 7.4e-06 55.5 71 52.1


User provided reference genes

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