Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 5.7e-144 514.2 259 100.0
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 8.1e-106 387.5 253 76.3
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 5.4e-102 374.8 257 71.6
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 7.1e-102 374.4 252 73.0
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 3.0e-100 369.0 260 71.9
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 1.5e-99 366.7 259 71.0
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 1.6e-98 363.2 253 71.1
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 1.1e-97 360.5 259 68.7
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 4.4e-96 355.1 252 71.0
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 3.8e-95 352.1 259 69.5
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 1.6e-93 346.7 259 66.0
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 7.8e-93 344.4 251 67.7
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 1.0e-92 344.0 250 68.8
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 1.0e-92 344.0 303 61.1
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 1.7e-92 343.2 259 66.0
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 6.6e-92 341.3 247 68.4
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 1.1e-91 340.5 257 66.9
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 3.3e-91 339.0 254 66.5
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 7.3e-91 337.8 257 66.9
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 9.6e-91 337.4 259 66.0
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 3.6e-90 335.5 262 66.0
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 4.7e-90 335.1 237 71.7
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 4.7e-90 335.1 259 64.5
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 6.2e-90 334.7 257 68.5
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 6.2e-90 334.7 230 73.0
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 1.1e-89 334.0 251 67.7
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 2.4e-89 332.8 251 66.5
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 3.1e-89 332.4 251 68.1
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 9.0e-89 330.9 248 67.7
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 1.2e-88 330.5 258 67.8
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 2.0e-88 329.7 258 65.9
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 3.4e-88 328.9 259 64.9
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 5.8e-88 328.2 258 65.5
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 7.6e-88 327.8 259 63.3
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 1.3e-87 327.0 242 66.5
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 1.2e-85 320.5 251 64.5
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 1.2e-85 320.5 251 64.9
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 2.7e-85 319.3 251 64.5
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 8.7e-84 314.3 251 63.3
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 1.5e-83 313.5 239 66.9
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 7.3e-83 311.2 256 61.3
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 1.6e-82 310.1 253 62.8
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 2.8e-82 309.3 255 60.4
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 2.8e-82 309.3 255 62.0
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 4.8e-82 308.5 250 62.4
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 1.8e-81 306.6 253 61.7
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 2.4e-81 306.2 258 60.9
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 6.9e-81 304.7 259 61.4
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 1.5e-80 303.5 253 62.1
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 2.0e-80 303.1 260 59.2
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 4.5e-80 302.0 253 62.8
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 7.6e-80 301.2 256 57.0
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.2e-79 299.7 259 61.0
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 2.2e-79 299.7 260 60.4
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 3.8e-79 298.9 237 63.7
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 4.9e-79 298.5 256 57.0
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 4.9e-79 298.5 253 60.1
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.9e-79 298.5 259 61.0
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 4.9e-79 298.5 248 61.7
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 8.4e-79 297.7 261 56.7
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 1.1e-78 297.4 259 56.8
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 1.1e-78 297.4 250 61.6
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 1.1e-78 297.4 250 61.6
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 1.4e-78 297.0 256 57.0
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 3.2e-78 295.8 258 58.5
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 4.2e-78 295.4 256 57.4
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 7.1e-78 294.7 256 56.6
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 2.1e-77 293.1 248 58.5
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 2.1e-77 293.1 248 58.5
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 2.1e-77 293.1 248 58.5
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 2.1e-77 293.1 238 63.0
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 2.7e-77 292.7 242 59.9
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 2.7e-77 292.7 242 59.9
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 3.5e-77 292.4 230 63.9
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 4.6e-77 292.0 212 67.9
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 1.3e-76 290.4 256 55.5
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 1.8e-76 290.0 241 61.0
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 1.1e-75 287.3 253 57.3
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 7.4e-75 284.6 238 61.3
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 7.4e-75 284.6 237 61.2
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 2.1e-74 283.1 237 61.2
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 1.8e-73 280.0 256 54.7
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 1.8e-73 280.0 256 54.7
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 1.5e-72 276.9 281 50.5
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 5.8e-72 275.0 247 58.3
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 8.4e-71 271.2 250 56.4
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 1.4e-70 270.4 256 55.1
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 2.5e-70 269.6 234 56.0
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 4.8e-66 255.4 253 56.5
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 6.2e-66 255.0 256 52.3
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 4.0e-65 252.3 255 55.7
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 5.3e-65 251.9 187 63.6
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 9.0e-65 251.1 253 53.4
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 1.0e-63 247.7 250 55.2
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 4.2e-62 242.3 224 59.8
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 3.5e-61 239.2 249 51.8
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 2.5e-59 233.0 337 44.5
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 2.2e-58 229.9 172 67.4
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 2.1e-53 213.4 245 49.0
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 7.9e-53 211.5 169 62.7
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 1.4e-49 200.7 146 66.4
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 2.8e-42 176.4 137 65.7
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 5.2e-36 155.6 110 69.1
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.1e-35 154.5 116 68.1
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.1e-35 154.5 116 68.1
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 2.0e-35 153.7 136 58.8
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 2.4e-33 146.7 245 38.8
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 2.7e-24 116.7 89 60.7
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 8.5e-23 111.7 206 35.9
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 1.2e-21 107.8 154 41.6
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 1.6e-21 107.5 129 48.1
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.3e-20 103.6 88 62.5
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 1.7e-18 97.4 62 77.4
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 1.1e-17 94.7 198 28.8
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 1.6e-16 90.9 104 48.1
Haze_26101 Corylus avellana HOM05D006609 ORTHO05D008551 5.7e-11 72.4 124 35.5
FvH4_5g31640 Fragaria vesca HOM05D006609 ORTHO05D046171 5.6e-06 55.8 60 53.3


User provided reference genes

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