Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 7.5e-261 903.3 446 100.0
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 1.7e-191 672.9 403 80.4
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 1.1e-163 580.5 416 70.0
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 8.0e-162 574.3 387 73.1
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 1.8e-161 573.2 405 69.4
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 3.0e-161 572.4 388 71.1
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.6e-160 569.3 381 73.5
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 7.5e-160 567.8 357 77.0
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.3e-159 567.0 353 76.8
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 2.2e-159 566.2 360 76.7
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 3.7e-159 565.5 384 71.4
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 1.8e-158 563.1 381 73.8
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 2.4e-158 562.8 409 68.7
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 5.4e-158 561.6 409 68.7
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 5.4e-158 561.6 412 68.7
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 1.2e-157 560.5 411 67.6
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 2.7e-157 559.3 355 76.9
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 4.5e-157 558.5 358 74.3
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 5.9e-157 558.1 359 75.5
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 7.8e-157 557.8 391 70.6
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.3e-156 557.0 347 76.9
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.7e-156 556.6 389 70.2
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 1.1e-155 553.9 360 74.2
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.5e-155 553.5 410 66.8
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 5.6e-155 551.6 348 76.1
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 3.6e-154 548.9 404 68.1
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 8.0e-154 547.7 348 75.6
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.8e-153 546.6 351 74.6
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 1.8e-153 546.6 353 73.1
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 2.3e-153 546.2 354 75.4
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 3.1e-153 545.8 403 68.7
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 4.0e-153 545.4 423 64.1
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 6.8e-153 544.7 417 64.7
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 3.4e-152 542.3 355 73.5
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.8e-152 541.6 351 74.1
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.3e-151 540.4 363 73.0
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 3.7e-151 538.9 350 74.3
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.4e-150 537.0 356 72.8
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.9e-150 536.6 350 74.6
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 4.1e-150 535.4 350 74.6
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 9.2e-150 534.3 382 69.1
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 1.6e-149 533.5 367 69.5
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 2.0e-149 533.1 349 73.1
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 6.0e-149 531.6 409 64.8
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 1.7e-148 530.0 343 73.8
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.3e-148 529.6 353 70.8
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 5.0e-148 528.5 353 71.1
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 6.6e-148 528.1 359 71.9
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.9e-147 526.6 354 72.6
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 3.3e-147 525.8 352 74.4
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 1.6e-146 523.5 357 70.9
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 2.1e-146 523.1 418 62.7
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 2.1e-146 523.1 355 71.8
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 2.8e-146 522.7 349 71.3
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.8e-146 522.7 405 66.4
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 8.0e-146 521.2 348 71.3
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 2.3e-145 519.6 357 70.6
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 3.1e-145 519.2 393 64.1
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 4.0e-145 518.8 357 70.0
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 8.9e-145 517.7 359 70.2
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 2.6e-144 516.2 310 80.3
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 2.6e-144 516.2 415 62.2
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.4e-144 515.8 303 79.5
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 7.5e-144 514.6 404 63.1
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 9.8e-144 514.2 378 66.7
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 9.8e-144 514.2 353 70.8
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 2.2e-143 513.1 349 69.1
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 2.2e-143 513.1 385 65.2
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.1e-142 510.8 360 70.8
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 2.4e-142 509.6 359 68.5
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 2.4e-142 509.6 351 71.8
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 4.1e-142 508.8 355 69.6
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.6e-141 506.9 360 69.4
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 6.0e-141 505.0 303 77.6
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.0e-140 504.2 412 61.9
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 1.7e-140 503.4 359 66.9
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 2.3e-140 503.1 339 71.4
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 2.3e-140 503.1 350 68.6
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 3.0e-140 502.7 403 61.0
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 3.9e-140 502.3 358 66.8
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 1.9e-139 500.0 358 66.8
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 2.5e-139 499.6 358 66.5
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 7.3e-139 498.0 356 65.7
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 9.5e-139 497.7 348 67.5
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 1.2e-138 497.3 349 67.3
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 3.6e-138 495.7 334 69.8
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 6.2e-138 495.0 358 67.9
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.3e-137 493.0 334 71.6
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 2.3e-137 493.0 357 67.2
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 4.0e-137 492.3 408 60.8
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 4.0e-137 492.3 414 59.9
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.2e-136 490.7 358 65.1
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 1.5e-136 490.3 360 64.7
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 3.4e-136 489.2 363 66.1
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 2.2e-135 486.5 347 67.4
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.4e-135 485.0 303 75.6
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 8.3e-135 484.6 359 64.6
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 3.2e-134 482.6 348 65.8
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 5.4e-134 481.9 278 80.9
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 2.1e-133 479.9 358 63.4
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 3.5e-133 479.2 409 60.1
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 6.6e-132 474.9 360 65.0
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 8.1e-130 468.0 323 70.0
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.8e-129 466.8 313 70.6
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 4.0e-129 465.7 332 67.2
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 2.2e-127 459.9 304 70.7
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.1e-126 457.6 356 63.8
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 1.4e-126 457.2 329 66.6
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.4e-126 456.4 265 80.4
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 3.2e-126 456.1 329 66.6
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 5.4e-126 455.3 319 70.8
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.6e-125 453.8 348 67.0
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 3.8e-119 432.6 329 65.3
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 2.4e-118 429.9 347 61.4
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 7.3e-115 418.3 323 62.8
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 3.4e-112 409.5 246 77.6
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 6.0e-109 398.7 479 45.7
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 1.3e-108 397.5 251 70.9
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.8e-105 387.1 294 67.0
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.1e-105 386.3 382 51.8
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 2.9e-103 379.8 275 69.1
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.1e-102 377.9 221 80.5
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 7.1e-102 375.2 384 51.0
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 2.1e-101 373.6 258 69.8
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 2.1e-101 373.6 325 60.0
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.1e-101 373.6 378 52.9
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 4.6e-101 372.5 248 72.2
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 1.1e-99 367.9 352 53.7
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.8e-98 363.2 415 48.7
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 3.7e-98 362.8 298 61.7
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 1.0e-95 354.8 246 74.8
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 2.7e-93 346.7 377 53.3
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 6.1e-93 345.5 210 74.8
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 7.9e-93 345.1 292 60.6
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 1.8e-92 344.0 359 50.7
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 1.9e-91 340.5 243 67.5
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 1.3e-90 337.8 353 49.6
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 4.8e-90 335.9 285 61.4
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 2.0e-80 303.9 192 67.7
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.2e-79 300.4 194 76.3
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 4.2e-78 296.2 279 50.9
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 2.1e-77 293.9 263 59.7
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.7e-77 293.5 302 53.6
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 3.9e-76 289.7 220 65.9
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.6e-72 276.9 194 71.6
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 3.0e-68 263.5 204 66.7
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 8.8e-68 261.9 331 48.0
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 7.2e-62 242.3 134 82.8
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 4.1e-49 199.9 172 61.6
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 9.5e-46 188.7 126 69.8
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 1.4e-44 184.9 341 38.7
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 2.3e-44 184.1 325 33.8
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.1e-41 175.3 332 38.6
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 1.4e-41 174.9 235 46.0
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 5.9e-40 169.5 117 74.4
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 2.1e-37 161.0 89 82.0
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 2.1e-37 161.0 222 36.5
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.0e-36 158.7 294 31.3
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 4.9e-34 149.8 157 45.9
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.9e-26 124.0 216 32.4
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 5.4e-17 93.2 82 54.9
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 1.6e-16 91.7 112 50.9
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 7.8e-16 89.4 65 60.0
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.7e-15 88.2 67 61.2
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 1.1e-14 85.5 73 54.8
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 2.5e-14 84.3 73 54.8
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 3.3e-14 84.0 49 79.6
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 9.3e-09 65.9 40 75.0
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.5e-06 58.5 62 48.4
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 4.3e-06 57.0 73 49.3
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 9.6e-06 55.8 55 50.9


User provided reference genes

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