Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 5.2e-45 184.1 100 100.0
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 4.6e-25 117.9 102 67.6
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 3.9e-24 114.8 101 65.3
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 1.5e-23 112.8 101 65.3
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 2.5e-23 112.1 101 65.3
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 2.5e-23 112.1 100 64.0
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.6e-22 109.4 102 63.7
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 2.1e-22 109.0 103 66.0
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 3.6e-22 108.2 106 65.1
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 3.6e-22 108.2 102 62.7
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 4.8e-22 107.8 106 65.1
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 2.9e-19 98.6 94 61.7
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 4.9e-19 97.8 112 58.0
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 3.2e-18 95.1 101 58.4
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 3.2e-18 95.1 93 62.4
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 4.2e-18 94.7 100 58.0
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 3.5e-17 91.7 101 59.4
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 1.0e-16 90.1 105 61.9
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 1.0e-16 90.1 103 61.2
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.0e-16 90.1 102 55.9
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.8e-16 89.4 103 60.2
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 3.9e-16 88.2 94 59.6
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 2.5e-15 85.5 101 57.4
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 1.6e-14 82.8 103 58.3
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 1.6e-14 82.8 103 51.5
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 1.6e-14 82.8 101 56.4
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 1.6e-14 82.8 94 54.3
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 6.2e-14 80.9 101 53.5
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 8.1e-14 80.5 101 54.5
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 1.1e-13 80.1 97 57.7
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 1.8e-13 79.3 103 55.3
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 1.8e-13 79.3 95 57.9
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 1.8e-13 79.3 103 55.3
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 2.4e-13 79.0 100 54.0
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 2.4e-13 79.0 103 54.4
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 5.3e-13 77.8 103 56.3
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 5.3e-13 77.8 101 51.5
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 5.3e-13 77.8 100 52.0
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 6.9e-13 77.4 104 55.8
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 6.9e-13 77.4 101 51.5
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 9.0e-13 77.0 100 51.0
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 1.2e-12 76.6 100 55.0
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 1.5e-12 76.3 95 54.7
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 1.5e-12 76.3 99 52.5
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 2.0e-12 75.9 98 51.0
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 2.0e-12 75.9 101 54.5
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 3.4e-12 75.1 97 53.6
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 4.5e-12 74.7 104 57.7
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 4.5e-12 74.7 97 53.6
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 5.8e-12 74.3 99 50.5
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 7.6e-12 73.9 104 53.8
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 7.6e-12 73.9 92 53.3
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 7.6e-12 73.9 102 54.9
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 1.0e-11 73.6 99 50.5
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 1.0e-11 73.6 96 56.2
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 1.3e-11 73.2 96 56.2
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 2.2e-11 72.4 94 50.0
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 2.9e-11 72.0 100 50.0
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 2.9e-11 72.0 101 53.5
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 4.9e-11 71.2 94 53.2
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 4.9e-11 71.2 101 51.5
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 4.9e-11 71.2 99 50.5
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 4.9e-11 71.2 94 55.3
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 6.5e-11 70.9 100 50.0
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 6.5e-11 70.9 97 49.5
Hund19532 Selenicereus undatus HOM05D007491 ORTHO05D009489 6.5e-11 70.9 93 51.6
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 8.4e-11 70.5 99 48.5
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 1.1e-10 70.1 97 50.5
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 2.5e-10 68.9 100 53.0
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 2.5e-10 68.9 92 51.1
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 3.2e-10 68.6 61 59.0
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 4.2e-10 68.2 98 52.0
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 4.2e-10 68.2 100 47.0
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 5.5e-10 67.8 99 53.5
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 5.5e-10 67.8 99 53.5
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 5.5e-10 67.8 100 55.0
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 5.5e-10 67.8 96 52.1
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 7.1e-10 67.4 92 48.9
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 7.1e-10 67.4 92 48.9
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 7.1e-10 67.4 99 52.5
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 7.1e-10 67.4 52 69.2
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 7.1e-10 67.4 101 47.5
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 7.1e-10 67.4 100 49.0
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 9.3e-10 67.0 95 49.5
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 9.3e-10 67.0 68 58.8
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 1.2e-09 66.6 95 49.5
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 1.2e-09 66.6 93 51.6
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 1.6e-09 66.2 101 50.5
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 2.1e-09 65.9 92 48.9
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 2.1e-09 65.9 92 48.9
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 2.1e-09 65.9 95 48.4
EL10Ac2g04054 Beta vulgaris HOM05D007491 ORTHO05D009489 2.7e-09 65.5 93 45.2
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 4.6e-09 64.7 96 54.2
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 1.3e-08 63.2 94 50.0
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 1.3e-08 63.2 96 45.8
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 1.5e-07 59.7 57 59.6
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 1.9e-07 59.3 94 41.5
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 2.5e-07 58.9 89 49.4
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 3.3e-07 58.5 80 43.8
Os02g0273900 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 4.3e-07 58.2 56 57.1
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 4.3e-07 58.2 78 46.2
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 7.4e-07 57.4 86 44.2
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 1.3e-06 56.6 100 40.0
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 1.6e-06 56.2 99 39.4
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 2.1e-06 55.8 97 42.3
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.1e-06 55.8 105 40.0
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 2.8e-06 55.5 102 41.2
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 2.8e-06 55.5 86 43.0
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 2.8e-06 55.5 85 40.0
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 3.7e-06 55.1 106 41.5
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 3.7e-06 55.1 96 41.7
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 3.7e-06 55.1 47 59.6
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 3.7e-06 55.1 99 39.4
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 4.8e-06 54.7 83 41.0
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 6.2e-06 54.3 59 50.8
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 6.2e-06 54.3 59 50.8


User provided reference genes

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