Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 1.2e-242 842.8 437 100.0
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 2.9e-180 635.6 441 78.9
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 6.2e-151 538.1 406 74.1
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 1.2e-146 523.9 402 73.1
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 6.0e-146 521.5 409 73.3
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 1.4e-134 483.8 412 65.8
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 1.9e-131 473.4 414 64.5
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 2.1e-130 469.9 443 62.5
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 6.7e-129 464.9 409 64.8
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 4.3e-128 462.2 418 62.4
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 9.7e-128 461.1 449 60.6
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 2.8e-127 459.5 445 61.3
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 3.7e-127 459.1 443 61.4
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.1e-126 457.6 418 62.0
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 5.3e-126 455.3 453 60.0
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 3.4e-125 452.6 301 82.1
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 7.7e-125 451.4 418 61.0
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 2.2e-124 449.9 446 60.1
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 2.5e-123 446.4 415 62.7
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 2.5e-123 446.4 451 59.9
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 9.4e-123 444.5 418 60.8
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 6.1e-122 441.8 415 61.4
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 3.9e-121 439.1 423 61.7
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 1.5e-117 427.2 449 57.0
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 1.5e-117 427.2 448 57.6
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 7.7e-117 424.9 434 58.5
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 5.0e-116 422.2 449 58.6
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.9e-115 420.2 357 65.3
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 2.3e-113 413.3 411 57.7
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 4.4e-112 409.1 487 52.6
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 7.4e-112 408.3 452 56.0
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 2.2e-111 406.8 429 57.1
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 4.8e-111 405.6 420 56.9
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 1.1e-107 394.4 419 55.1
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 2.1e-106 390.2 429 56.6
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 1.4e-105 387.5 414 54.3
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 1.4e-105 387.5 420 54.8
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 5.2e-105 385.6 407 57.5
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 2.6e-104 383.3 416 54.6
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 9.7e-104 381.3 353 60.3
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 3.7e-103 379.4 447 53.7
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 9.1e-102 374.8 418 53.8
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 9.1e-102 374.8 408 53.9
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 2.0e-101 373.6 420 53.3
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 2.9e-100 369.8 410 53.4
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 3.8e-100 369.4 446 53.6
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.5e-99 367.5 458 53.1
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 2.5e-99 366.7 443 53.3
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 7.2e-99 365.2 448 50.2
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 2.1e-98 363.6 430 50.0
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 3.6e-98 362.8 409 54.5
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 6.1e-98 362.1 408 54.4
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 1.0e-97 361.3 432 52.3
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 6.8e-97 358.6 312 64.4
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 6.8e-97 358.6 434 52.5
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 8.8e-97 358.2 411 55.5
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 8.3e-95 351.7 375 54.9
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 8.3e-95 351.7 440 51.4
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 1.4e-94 350.9 480 47.7
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 3.1e-94 349.7 409 52.8
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 4.5e-93 345.9 285 65.6
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 4.2e-91 339.3 305 63.9
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 2.3e-89 333.6 458 49.3
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 3.4e-88 329.7 413 49.4
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 9.8e-88 328.2 437 47.4
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 9.8e-88 328.2 412 50.7
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 1.3e-87 327.8 438 49.3
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 1.1e-86 324.7 419 48.7
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 2.4e-86 323.6 300 59.0
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 9.2e-86 321.6 486 47.5
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 8.6e-84 315.1 375 50.7
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 7.3e-83 312.0 403 50.1
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 6.8e-81 305.4 357 52.9
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 1.3e-79 301.2 356 52.0
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 3.2e-78 296.6 310 55.8
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 2.0e-77 293.9 413 47.7
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 1.9e-75 287.3 262 63.0
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 2.5e-75 287.0 291 58.8
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 1.4e-73 281.2 371 48.5
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 2.6e-72 276.9 401 48.6
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 5.8e-72 275.8 405 48.4
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 1.7e-71 274.2 424 46.2
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 2.2e-71 273.9 415 43.4
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 2.4e-70 270.4 374 46.8
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 2.4e-70 270.4 402 46.8
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 4.1e-70 269.6 368 49.5
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 7.8e-69 265.4 318 52.5
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 1.7e-68 264.2 364 48.9
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 5.1e-68 262.7 356 48.9
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 1.5e-67 261.2 312 50.3
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 9.5e-67 258.5 329 49.8
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 1.1e-65 255.0 369 47.2
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 2.2e-63 247.3 364 48.1
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 3.5e-61 240.0 354 47.5
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 6.6e-60 235.7 373 45.8
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 8.1e-58 228.8 345 44.6
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 7.1e-54 215.7 273 53.1
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 8.1e-50 202.2 386 41.2
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 2.4e-49 200.7 371 40.2
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 5.3e-49 199.5 396 39.9
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 2.4e-46 190.7 331 40.8
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 5.4e-46 189.5 327 40.7
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 2.7e-45 187.2 345 40.6
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 4.6e-45 186.4 345 39.7
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 6.0e-45 186.0 346 40.8
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 3.0e-44 183.7 327 40.1
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 3.9e-44 183.3 424 37.5
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 5.1e-44 183.0 421 37.5
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 4.3e-43 179.9 334 40.1
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 7.3e-43 179.1 330 40.6
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 1.5e-40 171.4 420 36.0
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 4.5e-40 169.9 274 43.4
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 7.6e-40 169.1 303 40.6
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 2.4e-38 164.1 193 52.3
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 1.6e-37 161.4 320 39.7
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 7.9e-37 159.1 319 39.2
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 7.9e-37 159.1 319 38.6
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 1.8e-36 157.9 320 39.4
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 3.9e-36 156.8 387 34.6
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 6.7e-36 156.0 339 36.9
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 7.6e-32 142.5 326 36.8
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 3.0e-28 130.6 321 34.6
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 3.4e-24 117.1 283 33.2
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 2.5e-22 110.9 124 51.6
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 7.2e-22 109.4 206 39.8
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 2.1e-21 107.8 237 34.6
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 3.5e-21 107.1 158 45.6
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 5.7e-19 99.8 224 35.7
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 7.4e-19 99.4 340 31.5
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 4.8e-18 96.7 257 34.6
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 1.8e-17 94.7 133 45.1
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 2.6e-16 90.9 167 38.9
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 1.0e-15 89.0 174 36.8
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 6.5e-15 86.3 189 36.0
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 1.4e-14 85.1 99 48.5
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 7.2e-14 82.8 175 36.0
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 1.8e-12 78.2 103 45.6
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 1.1e-06 58.9 103 36.9
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 1.1e-06 58.9 103 36.9
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 2.5e-06 57.8 51 54.9


User provided reference genes

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