Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G064200 Manihot esculenta HOM05D006393 ORTHO05D008088 3.2e-156 555.1 288 100.0
QL02p086364 Quercus lobata HOM05D006393 ORTHO05D008088 2.4e-135 485.7 287 84.3
Haze_25669 Corylus avellana HOM05D006393 ORTHO05D008088 7.0e-135 484.2 288 84.4
Cfa003299 Carpinus fangiana HOM05D006393 ORTHO05D008088 1.7e-133 479.6 288 83.3
TWI34G1546 Tripterygium wilfordii HOM05D006393 ORTHO05D008088 3.9e-133 478.4 288 81.9
GSVIVG01015453001 Vitis vinifera HOM05D006393 ORTHO05D008088 2.8e-131 472.2 288 81.2
Prupe.7G235100 Prunus persica HOM05D006393 ORTHO05D008088 4.7e-131 471.5 288 80.9
Cpa.g.sc23.161 Carica papaya HOM05D006393 ORTHO05D008088 6.2e-131 471.1 288 81.9
Potri.018G073000 Populus trichocarpa HOM05D006393 ORTHO05D008088 1.1e-130 470.3 288 81.9
CiPaw.03G236400 Carya illinoinensis HOM05D006393 ORTHO05D008088 4.0e-130 468.4 288 81.2
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 5.2e-130 468.0 288 81.9
MELO3C025307.2 Cucumis melo HOM05D006393 ORTHO05D008088 1.5e-129 466.5 288 78.8
Sed0023374 Sechium edule HOM05D006393 ORTHO05D008088 5.8e-129 464.5 288 79.5
CsaV3_1G030940 Cucumis sativus L. HOM05D006393 ORTHO05D008088 7.5e-129 464.2 288 79.2
Thecc.09G116800 Theobroma cacao HOM05D006393 ORTHO05D008088 7.5e-129 464.2 288 81.2
Duzib168G1441 Durio zibethinus HOM05D006393 ORTHO05D008088 4.9e-128 461.5 288 80.9
FvH4_1g04221 Fragaria vesca HOM05D006393 ORTHO05D008088 8.3e-128 460.7 288 78.1
Gohir.D06G058100 Gossypium hirsutum HOM05D006393 ORTHO05D008088 1.2e-126 456.8 288 80.2
ClCG06G010490 Citrullus lanatus HOM05D006393 ORTHO05D008088 1.6e-126 456.4 289 77.5
Ciclev10008889m.g Citrus clementina HOM05D006393 ORTHO05D008088 1.6e-126 456.4 288 80.6
Gorai.010G068300 Gossypium raimondii HOM05D006393 ORTHO05D008088 1.6e-126 456.4 288 80.2
Atru.chr7.1280 Acer truncatum HOM05D006393 ORTHO05D008088 2.1e-126 456.1 288 78.5
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 1.3e-125 453.4 288 79.2
RcHm_v2.0_Chr2g0089771 Rosa chinensis HOM05D006393 ORTHO05D008088 1.3e-125 453.4 288 77.4
Gohir.A06G059900 Gossypium hirsutum HOM05D006393 ORTHO05D008088 2.3e-125 452.6 288 79.5
Rhsim01G0090600 Rhododendron simsii HOM05D006393 ORTHO05D008088 1.9e-124 449.5 288 77.4
Aqoxy7G01879 Aquilegia oxysepala HOM05D006393 ORTHO05D008088 2.5e-124 449.1 287 78.4
MD02G1061500 Malus domestica HOM05D006393 ORTHO05D008088 4.3e-124 448.4 288 76.0
Hund09172 Selenicereus undatus HOM05D006393 ORTHO05D008088 4.7e-123 444.9 288 76.4
CSS0031330 Camellia sinensis var. sinensis HOM05D006393 ORTHO05D008088 1.8e-122 443.0 288 75.3
PGR102G0276 Punica granatum HOM05D006393 ORTHO05D008088 3.1e-122 442.2 288 76.7
Sabra18G0063700 Salix brachista HOM05D006393 ORTHO05D008088 4.0e-122 441.8 288 78.5
Hma1.2p1_0018F.1_g013070 Hydrangea macrophylla HOM05D006393 ORTHO05D008088 2.6e-121 439.1 288 77.1
Nn8g39292 Nelumbo nucifera HOM05D006393 ORTHO05D008088 2.6e-121 439.1 288 76.7
vmacro20677 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 2.9e-120 435.6 283 76.3
AUR62033415 Chenopodium quinoa HOM05D006393 ORTHO05D008088 4.9e-120 434.9 288 75.0
Aa31LG9G6050 Aethionema arabicum HOM05D006393 ORTHO05D008088 1.1e-119 433.7 280 75.7
CAN.G1665.6 Capsicum annuum HOM05D006393 ORTHO05D008088 1.1e-119 433.7 288 74.7
Nitab4.5_0002551g0020 Nicotiana tabacum HOM05D006393 ORTHO05D008088 1.1e-119 433.7 288 74.3
PSO782G0281 Papaver somniferum HOM05D006393 ORTHO05D008088 1.1e-119 433.7 282 76.2
AT5G19930 Arabidopsis thaliana HOM05D006393 ORTHO05D008088 3.2e-119 432.2 280 75.4
Thhalv10014278m.g Eutrema salsugineum HOM05D006393 ORTHO05D008088 5.4e-119 431.4 280 75.7
Sp6g24450 Schrenkiella parvula HOM05D006393 ORTHO05D008088 1.6e-118 429.9 280 75.0
DCAR_010438 Daucus carota HOM05D006393 ORTHO05D008088 7.8e-118 427.6 284 74.6
Carub.0006s1830 Capsella rubella HOM05D006393 ORTHO05D008088 1.0e-117 427.2 280 73.9
AL6G31460 Arabidopsis lyrata HOM05D006393 ORTHO05D008088 2.3e-117 426.0 280 73.9
Migut.C00826 Erythranthe guttata HOM05D006393 ORTHO05D008088 3.9e-117 425.2 288 71.5
A10p19800 Brassica napus HOM05D006393 ORTHO05D008088 6.6e-117 424.5 280 74.3
Solyc10g079970.2 Solanum lycopersicum HOM05D006393 ORTHO05D008088 6.6e-117 424.5 288 72.2
MSTRG.1197 Avicennia marina HOM05D006393 ORTHO05D008088 8.6e-117 424.1 284 72.9
PGSC0003DMG401029823 Solanum tuberosum HOM05D006393 ORTHO05D008088 8.6e-117 424.1 288 72.9
Sopen10g030590 Solanum pennellii HOM05D006393 ORTHO05D008088 1.1e-116 423.7 288 72.2
BcaC04g19399 Brassica carinata HOM05D006393 ORTHO05D008088 1.5e-116 423.3 280 73.9
C09p56120 Brassica napus HOM05D006393 ORTHO05D008088 1.5e-116 423.3 280 73.9
BolC9t58479H Brassica oleracea HOM05D006393 ORTHO05D008088 1.5e-116 423.3 280 73.9
BcaB08g36553 Brassica carinata HOM05D006393 ORTHO05D008088 1.9e-116 422.9 280 73.6
BraA10t44056Z Brassica rapa HOM05D006393 ORTHO05D008088 2.5e-116 422.5 280 73.2
FAN23G0113 Fragaria x ananassa HOM05D006393 ORTHO05D008088 4.3e-116 421.8 288 73.6
Lalb_Chr13g0302251 Lupinus albus HOM05D006393 ORTHO05D008088 4.3e-116 421.8 283 73.1
Lj7A639G46 Lonicera japonica HOM05D006393 ORTHO05D008088 1.6e-115 419.9 322 67.4
SGA_v2.0_scaffold92G28235 Striga asiatica HOM05D006393 ORTHO05D008088 1.6e-115 419.9 288 74.3
arahy.Tifrunner.gnm1.ann1.RZM4QH Arachis hypogaea HOM05D006393 ORTHO05D008088 6.2e-115 417.9 282 73.0
EL10Ac8g18557 Beta vulgaris HOM05D006393 ORTHO05D008088 6.2e-115 417.9 288 72.9
MBI01_g13571_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 1.4e-114 416.8 285 74.7
arahy.Tifrunner.gnm1.ann1.3AE437 Arachis hypogaea HOM05D006393 ORTHO05D008088 2.4e-114 416.0 280 73.2
THA.LOC104815111 Tarenaya hassleriana HOM05D006393 ORTHO05D008088 1.5e-113 413.3 284 72.5
HanXRQChr03g0062141 Helianthus annuus HOM05D006393 ORTHO05D008088 2.2e-112 409.5 288 71.2
MBI04_g35350_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 3.2e-111 405.6 249 80.3
Eucgr.C04142 Eucalyptus grandis HOM05D006393 ORTHO05D008088 1.2e-110 403.7 257 74.7
unitig_37.g13035 Utricularia gibba HOM05D006393 ORTHO05D008088 6.0e-110 401.4 288 68.4
Phvul.003G159300 Phaseolus vulgaris HOM05D006393 ORTHO05D008088 1.0e-109 400.6 288 70.5
VMungo1215G0586 Vigna mungo HOM05D006393 ORTHO05D008088 1.0e-109 400.6 282 71.3
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 6.6e-109 397.9 264 75.4
Psat4g042480 Pisum sativum HOM05D006393 ORTHO05D008088 6.6e-109 397.9 283 71.0
Lj4g0026371 Lotus japonicus HOM05D006393 ORTHO05D008088 1.1e-108 397.1 282 71.6
Ca_21724_v3 Cicer arietinum L. HOM05D006393 ORTHO05D008088 4.3e-108 395.2 282 69.9
Ah.14g081310 Amaranthus hybridus HOM05D006393 ORTHO05D008088 1.3e-107 393.7 348 61.8
Glyma.17G120200 Glycine max HOM05D006393 ORTHO05D008088 2.4e-106 389.4 285 70.2
TPR.G26762 Trifolium pratense HOM05D006393 ORTHO05D008088 2.4e-106 389.4 283 68.9
CDE06G0973 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 6.9e-106 387.9 288 66.7
Oeu046267.2 Olea europaea HOM05D006393 ORTHO05D008088 2.6e-105 386.0 426 50.7
Lsat_1_v5_gn_7_42880 Lactuca sativa HOM05D006393 ORTHO05D008088 7.6e-105 384.4 288 68.1
Medtr4g112990 Medicago truncatula HOM05D006393 ORTHO05D008088 7.6e-105 384.4 283 66.8
HPP92_009792 Vanilla planifolia HOM05D006393 ORTHO05D008088 2.2e-104 382.9 288 66.3
Nitab4.5_0010615g0010 Nicotiana tabacum HOM05D006393 ORTHO05D008088 3.5e-102 375.6 249 73.9
HPP92_008697 Vanilla planifolia HOM05D006393 ORTHO05D008088 6.6e-101 371.3 288 65.6
Os01g0507300 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 8.7e-101 370.9 279 65.6
Sc07g0007380 Simmondsia chinensis HOM05D006393 ORTHO05D008088 5.6e-100 368.2 236 76.7
Peaxi162Scf00223g01425 Petunia axillaris HOM05D006393 ORTHO05D008088 6.2e-99 364.8 301 64.1
SEGI_37175 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 8.1e-99 364.4 288 62.2
Zm00001eb122440 Zea mays HOM05D006393 ORTHO05D008088 1.2e-97 360.5 271 66.1
Zm00001eb106640 Zea mays HOM05D006393 ORTHO05D008088 1.5e-97 360.1 279 63.1
ATR0083G026 Amborella trichopoda HOM05D006393 ORTHO05D008088 8.4e-96 354.4 283 63.6
Cc06_g09230 Coffea canephora HOM05D006393 ORTHO05D008088 2.7e-94 349.4 236 74.2
Os01g0178200 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 1.3e-93 347.1 322 56.5
SalBow7G4467 Salvia bowleyana HOM05D006393 ORTHO05D008088 1.3e-88 330.5 288 59.7
ECA240G0151 Erigeron canadensis HOM05D006393 ORTHO05D008088 2.2e-88 329.7 222 73.0
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 4.9e-88 328.6 284 57.7
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 7.9e-86 321.2 196 77.0
Pp3c12_24880 Physcomitrium patens HOM05D006393 ORTHO05D008088 6.7e-85 318.2 282 55.7
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 5.7e-84 315.1 284 55.6
CARHR192920 Cardamine hirsuta HOM05D006393 ORTHO05D008088 1.3e-83 313.9 200 75.0
Oeu027539.2 Olea europaea HOM05D006393 ORTHO05D008088 1.3e-75 287.3 292 54.1
Peaxi162Scf00223g01424 Petunia axillaris HOM05D006393 ORTHO05D008088 1.1e-74 284.3 244 60.2
TAR636G2166 Trochodendron aralioides HOM05D006393 ORTHO05D008088 4.2e-63 245.7 145 84.1
PRCOL_00002470 Prasinoderma coloniale HOM05D006393 ORTHO05D008088 3.5e-57 226.1 281 47.3
Cre17.g726350 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 6.1e-54 215.3 319 42.0
CDE07G1479 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 6.7e-53 211.8 165 58.8
SEGI_23420 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 5.9e-49 198.7 181 53.0
Eucgr.L03082 Eucalyptus grandis HOM05D006393 ORTHO05D008088 5.9e-41 172.2 130 65.4
Cre02.g118200 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 5.0e-40 169.1 332 37.0
SEGI_36873 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 9.5e-39 164.9 181 49.7
Psat6g218400 Pisum sativum HOM05D006393 ORTHO05D008088 2.1e-38 163.7 116 73.3
MCO12G460 Micromonas commoda HOM05D006393 ORTHO05D008088 1.4e-37 161.0 160 55.6
Glyma.05G012000 Glycine max HOM05D006393 ORTHO05D008088 3.4e-36 156.4 119 69.7
Psat5g214680 Pisum sativum HOM05D006393 ORTHO05D008088 2.3e-29 133.7 95 70.5
SEGI_10855 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 4.4e-28 129.4 189 41.8
Eucgr.E03680 Eucalyptus grandis HOM05D006393 ORTHO05D008088 2.9e-27 126.7 90 68.9
Zm00001eb342450 Zea mays HOM05D006393 ORTHO05D008088 5.4e-26 122.5 161 44.1
vmacro16552 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 8.3e-11 72.0 144 39.6
TAR636G3545 Trochodendron aralioides HOM05D006393 ORTHO05D008088 1.9e-10 70.9 50 66.0
SEGI_30446 Sequoiadendron giganteum HOM05D006393 ORTHO05D000979 6.0e-09 65.9 58 53.4
SEGI_14370 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.3e-08 64.7 58 53.4
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 1.9e-07 60.8 253 26.9
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 1.6e-06 57.8 253 27.7
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 2.1e-06 57.4 254 26.8
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 4.7e-06 56.2 253 25.7
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 4.7e-06 56.2 253 26.9
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 6.2e-06 55.8 253 26.5
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 6.2e-06 55.8 256 25.8
Zm00001eb117320 Zea mays HOM05D006393 ORTHO05D444415 8.1e-06 55.5 55 60.0


User provided reference genes

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